Wall clock time and date at job start Tue Mar 31 2020 21:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.46967 * 2 1 4 4 N 1.46497 * 109.47524 * 120.00419 * 2 1 3 5 5 C 1.34775 * 119.99851 * 275.00471 * 4 2 1 6 6 O 1.21614 * 120.00138 * 359.97438 * 5 4 2 7 7 C 1.47380 * 120.00082 * 179.97438 * 5 4 2 8 8 C 1.47021 * 127.19197 * 179.70237 * 7 5 4 9 9 C 1.34179 * 105.95012 * 179.89015 * 8 7 5 10 10 O 1.34214 * 109.12957 * 0.37815 * 9 8 7 11 11 C 1.33654 * 110.90264 * 359.74725 * 10 9 8 12 12 C 1.50700 * 109.47103 * 240.00532 * 2 1 3 13 13 O 1.21286 * 120.00041 * 240.00237 * 12 2 1 14 14 N 1.34782 * 120.00148 * 59.99570 * 12 2 1 15 15 C 1.46499 * 119.99760 * 180.02562 * 14 12 2 16 16 H 1.08999 * 110.64381 * 31.86171 * 15 14 12 17 17 C 1.54327 * 110.85132 * 268.69494 * 15 14 12 18 18 N 1.47029 * 107.26766 * 219.67783 * 17 15 14 19 19 C 1.36939 * 125.65021 * 178.84914 * 18 17 15 20 20 H 1.07997 * 119.99773 * 347.79313 * 19 18 17 21 21 C 1.38811 * 119.99509 * 167.78740 * 19 18 17 22 22 N 1.31613 * 120.00608 * 325.97825 * 21 19 18 23 23 Si 1.86806 * 119.99274 * 145.97884 * 21 19 18 24 24 H 1.48495 * 109.47291 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47063 * 239.99759 * 23 21 19 26 26 H 1.48501 * 109.46672 * 120.00021 * 23 21 19 27 27 C 1.47428 * 108.69861 * 358.58470 * 18 17 15 28 28 C 1.54903 * 104.83505 * 24.35538 * 27 18 17 29 29 H 1.09001 * 111.00122 * 81.06209 * 28 27 18 30 30 O 1.42894 * 111.00994 * 204.91546 * 28 27 18 31 31 H 1.09002 * 109.47174 * 299.99942 * 1 2 3 32 32 H 1.09001 * 109.47713 * 59.99562 * 1 2 3 33 33 H 1.09002 * 109.47613 * 179.97438 * 1 2 3 34 34 H 0.97000 * 119.99945 * 94.99177 * 4 2 1 35 35 H 1.07994 * 127.02348 * 0.02562 * 8 7 5 36 36 H 1.08007 * 125.43426 * 180.12431 * 9 8 7 37 37 H 1.08007 * 125.79769 * 179.97438 * 11 10 9 38 38 H 0.96992 * 119.99857 * 0.02562 * 14 12 2 39 39 H 1.09003 * 109.99553 * 100.20287 * 17 15 14 40 40 H 1.09003 * 109.78069 * 339.02836 * 17 15 14 41 41 H 0.96997 * 119.99747 * 354.25193 * 22 21 19 42 42 H 1.08994 * 110.36433 * 143.19827 * 27 18 17 43 43 H 1.09003 * 110.36298 * 265.51907 * 27 18 17 44 44 H 0.96704 * 114.00068 * 298.55417 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8581 1.1617 2.4117 7 6 2.6378 -0.7133 3.5605 8 6 2.8434 -0.1375 4.8975 9 6 3.2951 -1.1407 5.6656 10 8 3.3886 -2.2550 4.9234 11 6 3.0020 -2.0238 3.6651 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6965 -1.1194 14 7 1.7066 -0.2498 -2.4547 15 6 2.1945 -0.9407 -3.6508 16 1 2.2910 -2.0102 -3.4643 17 6 3.5395 -0.3458 -4.1186 18 7 3.5072 -0.2958 -5.5876 19 6 4.5039 0.1892 -6.3918 20 1 5.3175 0.7545 -5.9619 21 6 4.4684 -0.0459 -7.7594 22 7 3.9739 -1.1751 -8.2205 23 14 5.1225 1.2406 -8.9454 24 1 5.6196 2.4121 -8.1802 25 1 4.0333 1.6720 -9.8578 26 1 6.2341 0.6605 -9.7411 27 6 2.2268 -0.8601 -6.0518 28 6 1.2566 -0.6764 -4.8583 29 1 0.8598 0.3384 -4.8300 30 8 0.1992 -1.6364 -4.9052 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2490 -1.6318 1.1524 35 1 2.6650 0.8837 5.2002 36 1 3.5474 -1.0628 6.7129 37 1 2.9817 -2.7509 2.8667 38 1 1.1492 0.5390 -2.5436 39 1 4.3625 -0.9791 -3.7872 40 1 3.6578 0.6602 -3.7160 41 1 3.7114 -1.8769 -7.6045 42 1 1.8648 -0.3136 -6.9226 43 1 2.3419 -1.9181 -6.2877 44 1 -0.3556 -1.5723 -5.6947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193165940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:41 Heat of formation + Delta-G solvation = -73.378976 kcal Electronic energy + Delta-G solvation = -28830.391253 eV Core-core repulsion = 24557.610995 eV Total energy + Delta-G solvation = -4272.780258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.89835 -40.52860 -39.32502 -38.11334 -35.39502 -35.16482 -34.42086 -33.31905 -32.09629 -31.16599 -29.72340 -28.35817 -27.33871 -25.26308 -24.34497 -23.31684 -21.84366 -20.92048 -20.74698 -20.37731 -20.19516 -19.02731 -17.72838 -17.24369 -17.11489 -16.66842 -16.49258 -16.05710 -15.72945 -15.26884 -15.11494 -14.76265 -14.38342 -14.17870 -13.85935 -13.75066 -13.60573 -13.28216 -13.27309 -12.92581 -12.78342 -12.65698 -12.59702 -12.26135 -11.93361 -11.77195 -11.60071 -10.80984 -10.59152 -10.36441 -10.22454 -10.19273 -10.12287 -10.09484 -9.87550 -9.61582 -9.44513 -9.18478 -9.02629 -8.42785 -7.10549 -6.24880 -3.19952 0.98203 1.71167 2.47188 2.49662 2.62899 3.06173 3.23145 3.48563 3.49622 3.64968 4.20927 4.22852 4.29374 4.43356 4.55650 4.68839 4.77226 4.86855 4.97221 5.11515 5.16848 5.28143 5.31694 5.33737 5.45680 5.47853 5.48978 5.54936 5.81729 5.83576 5.86877 5.89694 6.03254 6.23169 6.49230 6.55777 6.62582 6.71685 6.79792 7.19415 7.40704 7.65192 7.82367 7.91115 8.08358 8.38012 8.88372 9.70236 10.21461 11.09229 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.002194 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.161660 B =12760.824937 C =13256.136490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.127 3.873 3 H 0.117 0.883 4 N -0.709 5.709 5 C 0.592 3.408 6 O -0.536 6.536 7 C -0.236 4.236 8 C -0.164 4.164 9 C -0.042 4.042 10 O -0.174 6.174 11 C 0.027 3.973 12 C 0.513 3.487 13 O -0.537 6.537 14 N -0.706 5.706 15 C 0.143 3.857 16 H 0.105 0.895 17 C 0.129 3.871 18 N -0.597 5.597 19 C -0.345 4.345 20 H 0.071 0.929 21 C -0.021 4.021 22 N -0.907 5.907 23 Si 1.063 2.937 24 H -0.291 1.291 25 H -0.289 1.289 26 H -0.294 1.294 27 C 0.119 3.881 28 C 0.077 3.923 29 H 0.068 0.932 30 O -0.563 6.563 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.408 0.592 35 H 0.160 0.840 36 H 0.209 0.791 37 H 0.213 0.787 38 H 0.401 0.599 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.269 0.731 42 H 0.059 0.941 43 H 0.037 0.963 44 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.625 0.220 22.944 24.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.019 3.981 3 H 0.135 0.865 4 N -0.362 5.362 5 C 0.380 3.620 6 O -0.414 6.414 7 C -0.241 4.241 8 C -0.184 4.184 9 C -0.107 4.107 10 O -0.068 6.068 11 C -0.044 4.044 12 C 0.298 3.702 13 O -0.413 6.413 14 N -0.357 5.357 15 C 0.038 3.962 16 H 0.123 0.877 17 C 0.002 3.998 18 N -0.326 5.326 19 C -0.472 4.472 20 H 0.088 0.912 21 C -0.224 4.224 22 N -0.547 5.547 23 Si 0.892 3.108 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.221 1.221 27 C -0.007 4.007 28 C 0.017 3.983 29 H 0.086 0.914 30 O -0.368 6.368 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.245 0.755 35 H 0.178 0.822 36 H 0.226 0.774 37 H 0.230 0.770 38 H 0.236 0.764 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.698 0.328 22.081 23.387 hybrid contribution -0.471 -0.095 0.875 0.999 sum -8.169 0.233 22.957 24.368 Atomic orbital electron populations 1.22134 0.92526 1.03356 1.03719 1.20771 0.95826 0.98219 0.83318 0.86507 1.45564 1.67627 1.14691 1.08350 1.17220 0.76973 0.86029 0.81762 1.90791 1.50384 1.15295 1.84934 1.21458 1.12261 0.94590 0.95783 1.22784 1.03716 1.00916 0.90948 1.23979 1.05617 0.83330 0.97817 1.83813 1.66325 1.36833 1.19865 1.24568 0.97531 0.96821 0.85438 1.20468 0.80282 0.84728 0.84756 1.90705 1.37795 1.26343 1.86483 1.45848 1.52928 1.31710 1.05197 1.22029 0.93581 0.98343 0.82270 0.87744 1.21668 0.93570 0.98017 0.86514 1.44431 1.14820 1.73731 0.99584 1.19748 1.05337 1.31475 0.90668 0.91160 1.25720 1.00968 0.99931 0.95748 1.70745 1.42808 1.02858 1.38255 0.83596 0.76124 0.75506 0.75570 1.21722 1.21591 1.22140 1.22138 0.85963 0.98236 0.94386 1.23354 0.87386 0.91229 0.96328 0.91404 1.86443 1.44824 1.58251 1.47243 0.90713 0.90687 0.91574 0.75519 0.82214 0.77397 0.77026 0.76386 0.94755 0.94815 0.92001 0.92246 0.94544 0.77330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.38 37.15 0.35 -1.07 16 2 C 0.13 1.40 2.98 -69.09 -0.21 1.19 16 3 H 0.12 1.32 7.58 -51.93 -0.39 0.92 16 4 N -0.71 -7.67 4.94 -56.03 -0.28 -7.95 16 5 C 0.59 7.15 7.78 -12.54 -0.10 7.06 16 6 O -0.54 -8.09 16.65 5.27 0.09 -8.00 16 7 C -0.24 -2.38 6.31 -103.28 -0.65 -3.04 16 8 C -0.16 -1.44 11.01 -37.45 -0.41 -1.85 16 9 C -0.04 -0.28 12.03 29.30 0.35 0.08 16 10 O -0.17 -1.37 10.52 7.65 0.08 -1.29 16 11 C 0.03 0.21 11.61 30.07 0.35 0.56 16 12 C 0.51 7.04 7.22 -10.98 -0.08 6.96 16 13 O -0.54 -9.08 15.48 5.55 0.09 -8.99 16 14 N -0.71 -9.55 5.00 -52.03 -0.26 -9.81 16 15 C 0.14 2.48 3.04 -66.09 -0.20 2.28 16 16 H 0.10 2.03 7.55 -51.93 -0.39 1.64 16 17 C 0.13 2.71 7.00 -3.06 -0.02 2.69 16 18 N -0.60 -14.76 3.33 -170.07 -0.57 -15.32 16 19 C -0.35 -9.60 9.97 -15.06 -0.15 -9.75 16 20 H 0.07 1.97 8.02 -52.49 -0.42 1.55 16 21 C -0.02 -0.60 4.95 -17.43 -0.09 -0.68 16 22 N -0.91 -26.75 12.87 55.49 0.71 -26.03 16 23 Si 1.06 24.86 30.03 -169.99 -5.10 19.75 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.12 2.62 5.07 -2.53 -0.01 2.60 16 28 C 0.08 1.30 4.06 -24.58 -0.10 1.20 16 29 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 30 O -0.56 -8.53 13.47 -35.23 -0.47 -9.00 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.56 7.57 -51.93 -0.39 0.17 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.41 3.95 6.76 -40.82 -0.28 3.67 16 35 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.21 0.54 8.06 -52.48 -0.42 0.12 16 37 H 0.21 0.99 7.47 -52.48 -0.39 0.60 16 38 H 0.40 4.30 7.98 -40.82 -0.33 3.97 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.69 8.03 -51.93 -0.42 0.28 16 41 H 0.27 8.01 6.45 -40.82 -0.26 7.75 16 42 H 0.06 1.39 7.82 -51.93 -0.41 0.98 16 43 H 0.04 0.88 7.03 -51.93 -0.36 0.51 16 44 H 0.38 4.23 9.11 45.56 0.42 4.65 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -36.53 375.95 -5.97 -42.50 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -4.95 Total: 10.26 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -0.97 Total: 8.23 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.39 Total: -59.12 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.22 Total: -27.28 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.10 Total: 19.75 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.53 -5.97 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193165940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.881 kcal (2) G-P(sol) polarization free energy of solvation -36.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds