Wall clock time and date at job start Tue Mar 31 2020 21:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.46967 * 2 1 4 4 N 1.46497 * 109.47524 * 120.00419 * 2 1 3 5 5 C 1.34775 * 119.99851 * 275.00471 * 4 2 1 6 6 O 1.21614 * 120.00138 * 359.97438 * 5 4 2 7 7 C 1.47380 * 120.00082 * 179.97438 * 5 4 2 8 8 C 1.47021 * 127.19197 * 179.70237 * 7 5 4 9 9 C 1.34179 * 105.95012 * 179.89015 * 8 7 5 10 10 O 1.34214 * 109.12957 * 0.37815 * 9 8 7 11 11 C 1.33654 * 110.90264 * 359.74725 * 10 9 8 12 12 C 1.50700 * 109.47103 * 240.00532 * 2 1 3 13 13 O 1.21286 * 120.00041 * 240.00237 * 12 2 1 14 14 N 1.34782 * 120.00148 * 59.99570 * 12 2 1 15 15 C 1.46499 * 119.99760 * 180.02562 * 14 12 2 16 16 H 1.08999 * 110.64381 * 31.86171 * 15 14 12 17 17 C 1.54327 * 110.85132 * 268.69494 * 15 14 12 18 18 N 1.47029 * 107.26766 * 219.67783 * 17 15 14 19 19 C 1.36939 * 125.65021 * 178.84914 * 18 17 15 20 20 H 1.07997 * 119.99773 * 347.79313 * 19 18 17 21 21 C 1.38811 * 119.99509 * 167.78740 * 19 18 17 22 22 N 1.31613 * 120.00608 * 325.97825 * 21 19 18 23 23 Si 1.86806 * 119.99274 * 145.97884 * 21 19 18 24 24 H 1.48495 * 109.47291 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47063 * 239.99759 * 23 21 19 26 26 H 1.48501 * 109.46672 * 120.00021 * 23 21 19 27 27 C 1.47428 * 108.69861 * 358.58470 * 18 17 15 28 28 C 1.54903 * 104.83505 * 24.35538 * 27 18 17 29 29 H 1.09001 * 111.00122 * 81.06209 * 28 27 18 30 30 O 1.42894 * 111.00994 * 204.91546 * 28 27 18 31 31 H 1.09002 * 109.47174 * 299.99942 * 1 2 3 32 32 H 1.09001 * 109.47713 * 59.99562 * 1 2 3 33 33 H 1.09002 * 109.47613 * 179.97438 * 1 2 3 34 34 H 0.97000 * 119.99945 * 94.99177 * 4 2 1 35 35 H 1.07994 * 127.02348 * 0.02562 * 8 7 5 36 36 H 1.08007 * 125.43426 * 180.12431 * 9 8 7 37 37 H 1.08007 * 125.79769 * 179.97438 * 11 10 9 38 38 H 0.96992 * 119.99857 * 0.02562 * 14 12 2 39 39 H 1.09003 * 109.99553 * 100.20287 * 17 15 14 40 40 H 1.09003 * 109.78069 * 339.02836 * 17 15 14 41 41 H 0.96997 * 119.99747 * 354.25193 * 22 21 19 42 42 H 1.08994 * 110.36433 * 143.19827 * 27 18 17 43 43 H 1.09003 * 110.36298 * 265.51907 * 27 18 17 44 44 H 0.96704 * 114.00068 * 298.55417 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8581 1.1617 2.4117 7 6 2.6378 -0.7133 3.5605 8 6 2.8434 -0.1375 4.8975 9 6 3.2951 -1.1407 5.6656 10 8 3.3886 -2.2550 4.9234 11 6 3.0020 -2.0238 3.6651 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6965 -1.1194 14 7 1.7066 -0.2498 -2.4547 15 6 2.1945 -0.9407 -3.6508 16 1 2.2910 -2.0102 -3.4643 17 6 3.5395 -0.3458 -4.1186 18 7 3.5072 -0.2958 -5.5876 19 6 4.5039 0.1892 -6.3918 20 1 5.3175 0.7545 -5.9619 21 6 4.4684 -0.0459 -7.7594 22 7 3.9739 -1.1751 -8.2205 23 14 5.1225 1.2406 -8.9454 24 1 5.6196 2.4121 -8.1802 25 1 4.0333 1.6720 -9.8578 26 1 6.2341 0.6605 -9.7411 27 6 2.2268 -0.8601 -6.0518 28 6 1.2566 -0.6764 -4.8583 29 1 0.8598 0.3384 -4.8300 30 8 0.1992 -1.6364 -4.9052 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2490 -1.6318 1.1524 35 1 2.6650 0.8837 5.2002 36 1 3.5474 -1.0628 6.7129 37 1 2.9817 -2.7509 2.8667 38 1 1.1492 0.5390 -2.5436 39 1 4.3625 -0.9791 -3.7872 40 1 3.6578 0.6602 -3.7160 41 1 3.7114 -1.8769 -7.6045 42 1 1.8648 -0.3136 -6.9226 43 1 2.3419 -1.9181 -6.2877 44 1 -0.3556 -1.5723 -5.6947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193165940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:36 Heat of formation + Delta-G solvation = -104.279086 kcal Electronic energy + Delta-G solvation = -28831.731182 eV Core-core repulsion = 24557.610995 eV Total energy + Delta-G solvation = -4274.120188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.50759 -41.64082 -40.46910 -39.51244 -36.87210 -36.18264 -35.84331 -34.10098 -33.75108 -32.11256 -30.49470 -29.97875 -28.93380 -26.46365 -25.83544 -24.30780 -22.57690 -22.43925 -22.07417 -21.50092 -21.23219 -19.84868 -19.60503 -18.53845 -18.13830 -17.70783 -17.22687 -17.09449 -16.85399 -16.36112 -16.08060 -16.03992 -15.72532 -15.59630 -15.37059 -15.21461 -14.71846 -14.55926 -14.29336 -14.04675 -13.86502 -13.80691 -13.45935 -13.33598 -13.32187 -13.24743 -12.73694 -12.66496 -12.52756 -11.88261 -11.85872 -11.74851 -11.32758 -11.28903 -11.01155 -10.88910 -10.57666 -10.38753 -10.27089 -9.77408 -9.15306 -8.45260 -5.36666 0.29034 1.10659 1.35243 1.54102 1.58955 1.64582 1.83318 2.02526 2.19878 2.25683 2.58312 2.88778 3.09489 3.34295 3.43748 3.58087 3.69255 3.74889 3.90321 3.93032 3.94826 4.02782 4.10313 4.24133 4.39087 4.50948 4.60670 4.71098 4.72015 4.75284 4.79173 4.87545 4.97503 5.02767 5.13352 5.17127 5.27769 5.31996 5.59380 5.95998 6.21299 6.30134 6.35058 6.72510 6.78023 6.98042 7.02845 7.61110 8.15185 8.87961 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.002194 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.161660 B =12760.824937 C =13256.136490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.134 3.866 3 H 0.117 0.883 4 N -0.705 5.705 5 C 0.593 3.407 6 O -0.574 6.574 7 C -0.271 4.271 8 C -0.194 4.194 9 C -0.024 4.024 10 O -0.178 6.178 11 C 0.042 3.958 12 C 0.516 3.484 13 O -0.569 6.569 14 N -0.693 5.693 15 C 0.159 3.841 16 H 0.084 0.916 17 C 0.129 3.871 18 N -0.617 5.617 19 C -0.357 4.357 20 H 0.061 0.939 21 C -0.070 4.070 22 N -0.931 5.931 23 Si 1.117 2.883 24 H -0.274 1.274 25 H -0.282 1.282 26 H -0.293 1.293 27 C 0.122 3.878 28 C 0.104 3.896 29 H 0.099 0.901 30 O -0.563 6.563 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.414 0.586 35 H 0.159 0.841 36 H 0.249 0.751 37 H 0.239 0.761 38 H 0.419 0.581 39 H 0.009 0.991 40 H 0.044 0.956 41 H 0.254 0.746 42 H 0.042 0.958 43 H 0.009 0.991 44 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.707 0.885 24.182 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.025 3.975 3 H 0.135 0.865 4 N -0.358 5.358 5 C 0.382 3.618 6 O -0.455 6.455 7 C -0.275 4.275 8 C -0.213 4.213 9 C -0.089 4.089 10 O -0.072 6.072 11 C -0.029 4.029 12 C 0.302 3.698 13 O -0.448 6.448 14 N -0.345 5.345 15 C 0.052 3.948 16 H 0.102 0.898 17 C 0.002 3.998 18 N -0.346 5.346 19 C -0.485 4.485 20 H 0.079 0.921 21 C -0.267 4.267 22 N -0.573 5.573 23 Si 0.940 3.060 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.220 1.220 27 C -0.005 4.005 28 C 0.044 3.956 29 H 0.117 0.883 30 O -0.371 6.371 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.252 0.748 35 H 0.177 0.823 36 H 0.265 0.735 37 H 0.255 0.745 38 H 0.257 0.743 39 H 0.027 0.973 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.026 0.974 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -8.821 0.993 23.342 24.973 hybrid contribution -0.088 -0.387 0.568 0.693 sum -8.909 0.607 23.909 25.523 Atomic orbital electron populations 1.22113 0.90463 1.03825 1.04631 1.20773 0.97248 0.97556 0.81900 0.86490 1.45566 1.67260 1.14904 1.08055 1.17502 0.76266 0.85640 0.82372 1.90759 1.52312 1.16839 1.85559 1.21509 1.14424 0.95863 0.95708 1.22963 1.05573 1.01730 0.91073 1.24673 1.03273 0.82038 0.98898 1.83853 1.66061 1.37330 1.19942 1.25007 0.95576 0.96382 0.85897 1.20927 0.79378 0.84190 0.85296 1.90698 1.39204 1.27947 1.86948 1.45608 1.52896 1.32063 1.03964 1.21520 0.92101 0.97205 0.83935 0.89808 1.21734 0.95125 0.98154 0.84777 1.44668 1.15310 1.73582 1.00992 1.19972 1.05994 1.31026 0.91488 0.92101 1.27118 1.01188 1.00781 0.97648 1.70873 1.45095 1.03500 1.37801 0.82875 0.75757 0.73522 0.73802 1.19874 1.20765 1.22009 1.22108 0.86280 0.95944 0.96152 1.23010 0.86698 0.93022 0.92890 0.88333 1.86415 1.44195 1.57903 1.48538 0.90923 0.88657 0.91298 0.74844 0.82344 0.73535 0.74500 0.74258 0.97341 0.93839 0.93624 0.93996 0.97358 0.74971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.38 71.98 0.68 -1.71 16 2 C 0.13 2.76 2.98 44.24 0.13 2.89 16 3 H 0.12 2.49 7.58 -2.38 -0.02 2.48 16 4 N -0.70 -14.72 4.94 -449.43 -2.22 -16.94 16 5 C 0.59 14.20 7.78 86.65 0.67 14.87 16 6 O -0.57 -17.45 16.65 -4.08 -0.07 -17.52 16 7 C -0.27 -5.31 6.31 -18.99 -0.12 -5.43 16 8 C -0.19 -3.28 11.01 23.65 0.26 -3.02 16 9 C -0.02 -0.26 12.03 66.89 0.80 0.54 16 10 O -0.18 -2.43 10.52 4.47 0.05 -2.38 16 11 C 0.04 0.59 11.61 67.39 0.78 1.37 16 12 C 0.52 13.50 7.22 87.66 0.63 14.13 16 13 O -0.57 -19.00 15.48 -3.05 -0.05 -19.05 16 14 N -0.69 -17.43 5.00 -436.89 -2.18 -19.61 16 15 C 0.16 5.40 3.04 46.18 0.14 5.54 16 16 H 0.08 3.26 7.55 -2.39 -0.02 3.25 16 17 C 0.13 5.46 7.00 86.73 0.61 6.06 16 18 N -0.62 -31.02 3.33 -691.97 -2.30 -33.33 16 19 C -0.36 -20.17 9.97 84.03 0.84 -19.33 16 20 H 0.06 3.47 8.02 -2.91 -0.02 3.45 16 21 C -0.07 -3.98 4.95 84.86 0.42 -3.56 16 22 N -0.93 -56.17 12.87 21.65 0.28 -55.89 16 23 Si 1.12 50.18 30.03 68.60 2.06 52.24 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 27 C 0.12 5.40 5.07 86.85 0.44 5.84 16 28 C 0.10 3.33 4.06 31.99 0.13 3.46 16 29 H 0.10 2.63 8.01 -2.39 -0.02 2.61 16 30 O -0.56 -15.75 13.47 -148.98 -2.01 -17.76 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.11 7.57 -2.39 -0.02 1.09 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.41 7.64 6.76 -92.71 -0.63 7.01 16 35 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.25 0.47 8.06 -2.91 -0.02 0.45 16 37 H 0.24 1.76 7.47 -2.91 -0.02 1.74 16 38 H 0.42 7.66 7.98 -92.71 -0.74 6.92 16 39 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.04 1.76 8.03 -2.39 -0.02 1.74 16 41 H 0.25 15.72 6.45 -92.71 -0.60 15.12 16 42 H 0.04 1.98 7.82 -2.39 -0.02 1.96 16 43 H 0.01 0.43 7.03 -2.39 -0.02 0.41 16 44 H 0.40 7.87 9.11 -74.05 -0.67 7.20 16 Total: -1.00 -81.72 375.95 -0.82 -82.54 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -0.80 Total: 26.05 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 6.42 Total: 21.66 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -6.43 Total: -125.77 kcal Atomic # 8 Polarization: -54.63 SS G_CDS: -2.08 Total: -56.71 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.06 Total: 52.24 kcal Total: -81.72 -0.82 -82.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193165940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.740 kcal (2) G-P(sol) polarization free energy of solvation -81.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds