Wall clock time and date at job start Tue Mar 31 2020 20:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.26921 * 2 1 4 4 C 1.53989 * 110.31138 * 237.91417 * 2 1 3 5 5 N 1.47900 * 107.05923 * 242.30488 * 4 2 1 6 6 C 1.46896 * 111.00040 * 214.15602 * 5 4 2 7 7 C 1.50700 * 109.46942 * 169.99708 * 6 5 4 8 8 O 1.21293 * 120.00282 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00075 * 179.97438 * 7 6 5 10 10 C 1.37104 * 120.00173 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99666 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00001 * 180.27893 * 10 9 7 13 13 N 1.31407 * 120.00135 * 179.72366 * 12 10 9 14 14 Si 1.86800 * 120.00194 * 359.72088 * 12 10 9 15 15 H 1.48500 * 109.47210 * 89.99937 * 14 12 10 16 16 H 1.48496 * 109.47530 * 210.00374 * 14 12 10 17 17 H 1.48501 * 109.47312 * 330.00618 * 14 12 10 18 18 C 1.48541 * 105.81760 * 334.66922 * 5 4 2 19 19 C 1.54594 * 110.31157 * 122.19251 * 2 1 3 20 20 H 1.08995 * 110.72602 * 22.51707 * 19 2 1 21 21 N 1.46506 * 110.72430 * 259.41379 * 19 2 1 22 22 C 1.34770 * 119.99737 * 154.99891 * 21 19 2 23 23 O 1.21285 * 120.00464 * 0.02562 * 22 21 19 24 24 C 1.50707 * 119.99840 * 179.97438 * 22 21 19 25 25 C 1.52995 * 109.47132 * 180.02562 * 24 22 21 26 26 F 1.39905 * 109.47139 * 60.00264 * 25 24 22 27 27 F 1.39898 * 109.47122 * 179.97438 * 25 24 22 28 28 F 1.39898 * 109.47382 * 299.99910 * 25 24 22 29 29 H 1.09007 * 109.46675 * 180.63252 * 1 2 3 30 30 H 1.08997 * 109.47333 * 300.63348 * 1 2 3 31 31 H 1.09002 * 109.47517 * 60.63895 * 1 2 3 32 32 H 1.09001 * 109.91878 * 122.95214 * 4 2 1 33 33 H 1.08999 * 110.08039 * 1.74757 * 4 2 1 34 34 H 1.08994 * 109.47346 * 50.00014 * 6 5 4 35 35 H 1.08998 * 109.47279 * 289.99686 * 6 5 4 36 36 H 0.97000 * 120.00140 * 0.02562 * 9 7 6 37 37 H 0.97004 * 120.00486 * 179.97438 * 13 12 10 38 38 H 1.08995 * 110.66700 * 157.64545 * 18 5 4 39 39 H 1.08998 * 110.66599 * 280.77270 * 18 5 4 40 40 H 0.97003 * 119.99755 * 334.99758 * 21 19 2 41 41 H 1.09001 * 109.46876 * 300.00209 * 24 22 21 42 42 H 1.08997 * 109.47141 * 59.99986 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0226 0.0000 4 6 2.0645 -0.7671 -1.2235 5 7 2.8314 -1.9228 -0.7100 6 6 3.9752 -2.2245 -1.5809 7 6 4.8666 -3.2357 -0.9072 8 8 4.5777 -3.6627 0.1907 9 7 5.9848 -3.6657 -1.5246 10 6 6.7955 -4.5861 -0.9119 11 1 6.5382 -4.9663 0.0657 12 6 7.9513 -5.0250 -1.5459 13 7 8.7312 -5.9031 -0.9563 14 14 8.3967 -4.3669 -3.2364 15 1 9.2368 -3.1513 -3.0889 16 1 9.1514 -5.4020 -3.9876 17 1 7.1560 -4.0241 -3.9769 18 6 3.2856 -1.5352 0.6501 19 6 2.0666 -0.7724 1.2269 20 1 1.3174 -1.4697 1.6017 21 7 2.4827 0.1550 2.2820 22 6 2.4982 -0.2499 3.5674 23 8 2.1683 -1.3821 3.8506 24 6 2.9268 0.7039 4.6527 25 6 2.8548 -0.0010 6.0087 26 9 3.7046 -1.1123 6.0023 27 9 3.2531 0.8842 7.0161 28 9 1.5415 -0.4196 6.2476 29 1 -0.3633 -1.0277 0.0113 30 1 -0.3634 0.5236 0.8842 31 1 -0.3634 0.5039 -0.8956 32 1 2.7162 -0.1207 -1.8115 33 1 1.2348 -1.1158 -1.8384 34 1 4.5395 -1.3112 -1.7691 35 1 3.6151 -2.6303 -2.5262 36 1 6.2161 -3.3240 -2.4024 37 1 9.5379 -6.2098 -1.3990 38 1 3.5049 -2.4191 1.2489 39 1 4.1564 -0.8821 0.5933 40 1 2.7470 1.0604 2.0554 41 1 3.9502 1.0296 4.4668 42 1 2.2650 1.5699 4.6574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206403865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:16 Heat of formation + Delta-G solvation = -209.787602 kcal Electronic energy + Delta-G solvation = -29864.396688 eV Core-core repulsion = 25043.844567 eV Total energy + Delta-G solvation = -4820.552120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 4.02 seconds Orbital eigenvalues (eV) -50.21288 -47.76710 -47.60679 -40.38022 -39.12756 -37.81949 -34.71632 -33.97924 -32.85506 -32.00723 -31.69830 -28.98046 -27.42226 -25.47806 -24.50581 -23.53630 -21.52942 -20.86803 -20.39969 -19.42047 -18.88627 -18.67877 -18.29865 -17.77718 -16.94443 -16.43907 -16.05102 -15.66455 -15.13865 -14.90751 -14.70142 -14.57974 -14.37011 -14.31440 -14.05996 -13.83408 -13.79516 -13.77530 -13.70257 -13.45443 -13.29997 -12.95591 -12.80093 -12.50072 -12.27726 -12.19281 -11.96729 -11.81496 -11.45104 -11.40069 -11.20052 -10.95168 -10.72966 -10.60099 -10.24050 -9.98419 -9.58193 -9.24086 -8.52202 -8.21926 -8.05990 -6.32029 -3.83707 2.25742 2.30246 2.82888 3.00919 3.04453 3.13435 3.48772 3.70112 3.81473 3.84248 4.04293 4.09302 4.34191 4.54567 4.58251 4.63137 4.70062 4.74081 4.79612 5.18779 5.22005 5.28053 5.36376 5.42060 5.52979 5.70350 5.72235 5.77912 5.82353 5.88909 5.99491 6.03949 6.25918 6.61227 7.03368 7.12218 7.16048 7.56343 7.87862 8.13823 8.58087 8.94136 9.40598 9.80805 10.80969 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.002979 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.608010 B = 9395.562195 C =11259.609915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 H 0.077 0.923 4 C 0.037 3.963 5 N -0.492 5.492 6 C 0.035 3.965 7 C 0.448 3.552 8 O -0.558 6.558 9 N -0.588 5.588 10 C -0.305 4.305 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.880 5.880 14 Si 0.879 3.121 15 H -0.272 1.272 16 H -0.276 1.276 17 H -0.269 1.269 18 C 0.029 3.971 19 C 0.140 3.860 20 H 0.109 0.891 21 N -0.715 5.715 22 C 0.516 3.484 23 O -0.507 6.507 24 C -0.196 4.196 25 C 0.472 3.528 26 F -0.169 7.169 27 F -0.185 7.185 28 F -0.174 7.174 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.370 0.630 37 H 0.274 0.726 38 H 0.126 0.874 39 H 0.039 0.961 40 H 0.400 0.600 41 H 0.139 0.861 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.819 21.211 3.532 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 H 0.096 0.904 4 C -0.091 4.091 5 N -0.217 5.217 6 C -0.097 4.097 7 C 0.234 3.766 8 O -0.440 6.440 9 N -0.228 5.228 10 C -0.434 4.434 11 H 0.138 0.862 12 C -0.161 4.161 13 N -0.520 5.520 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.195 1.195 18 C -0.099 4.099 19 C 0.035 3.965 20 H 0.126 0.874 21 N -0.367 5.367 22 C 0.300 3.700 23 O -0.381 6.381 24 C -0.237 4.237 25 C 0.417 3.583 26 F -0.150 7.150 27 F -0.166 7.166 28 F -0.155 7.155 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.143 0.857 39 H 0.057 0.943 40 H 0.234 0.766 41 H 0.157 0.843 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.376 19.434 4.519 24.593 hybrid contribution 1.361 1.635 -1.513 2.610 sum -13.015 21.069 3.006 24.947 Atomic orbital electron populations 1.21825 0.93715 1.02725 1.01545 1.22246 0.97014 0.98933 0.94510 0.90430 1.23035 0.98522 0.91406 0.96140 1.64561 1.20566 1.34495 1.02048 1.22149 0.91864 0.98321 0.97360 1.19622 0.82973 0.86371 0.87650 1.90518 1.72937 1.59842 1.20733 1.42190 1.22083 1.40242 1.18240 1.19442 1.01820 1.17393 1.04708 0.86208 1.25039 0.96069 0.96733 0.98281 1.69621 1.13887 1.30182 1.38277 0.86679 0.79046 0.79549 0.84157 1.19711 1.20131 1.19457 1.23876 0.94151 1.01023 0.90872 1.22192 0.97730 0.90767 0.85766 0.87351 1.45794 1.68811 1.16154 1.05893 1.19744 0.78660 0.88097 0.83546 1.90891 1.46014 1.19106 1.82100 1.22972 1.08835 1.01091 0.90844 1.19690 0.74447 0.77672 0.86492 1.93271 1.70651 1.54347 1.96722 1.93195 1.90834 1.68664 1.63928 1.93222 1.36314 1.90748 1.95245 0.91670 0.92686 0.92380 0.93703 0.89844 0.93246 0.88881 0.79729 0.91587 0.85666 0.94276 0.76582 0.84306 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.89 37.16 0.33 -0.77 16 2 C -0.11 -0.97 3.32 -89.27 -0.30 -1.26 16 3 H 0.08 0.54 7.76 -51.92 -0.40 0.13 16 4 C 0.04 0.41 6.35 -2.76 -0.02 0.39 16 5 N -0.49 -7.64 5.26 -231.90 -1.22 -8.86 16 6 C 0.03 0.57 5.52 -4.98 -0.03 0.54 16 7 C 0.45 10.09 7.49 -10.98 -0.08 10.01 16 8 O -0.56 -14.81 13.09 5.55 0.07 -14.73 16 9 N -0.59 -13.92 5.09 -10.96 -0.06 -13.98 16 10 C -0.30 -8.62 10.16 -14.93 -0.15 -8.78 16 11 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 12 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 13 N -0.88 -25.76 13.96 55.50 0.77 -24.99 16 14 Si 0.88 19.23 27.73 -169.99 -4.71 14.52 16 15 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 18 C 0.03 0.47 4.99 -1.90 -0.01 0.46 16 19 C 0.14 1.69 2.97 -66.07 -0.20 1.50 16 20 H 0.11 1.56 7.26 -51.93 -0.38 1.19 16 21 N -0.71 -6.65 5.18 -52.00 -0.27 -6.91 16 22 C 0.52 5.86 7.60 -10.98 -0.08 5.78 16 23 O -0.51 -8.47 14.48 5.55 0.08 -8.38 16 24 C -0.20 -1.40 5.75 -27.88 -0.16 -1.56 16 25 C 0.47 5.04 2.89 37.16 0.11 5.15 16 26 F -0.17 -2.37 16.40 2.25 0.04 -2.33 16 27 F -0.18 -1.79 17.32 2.25 0.04 -1.75 16 28 F -0.17 -2.17 16.40 2.25 0.04 -2.13 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.04 0.43 7.57 -51.93 -0.39 0.04 16 33 H 0.08 0.84 7.69 -51.93 -0.40 0.44 16 34 H 0.05 0.70 7.81 -51.93 -0.41 0.29 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.37 7.65 5.77 -40.82 -0.24 7.42 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 38 H 0.13 2.67 5.97 -51.93 -0.31 2.36 16 39 H 0.04 0.62 8.02 -51.93 -0.42 0.20 16 40 H 0.40 2.18 8.39 -40.82 -0.34 1.84 16 41 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -36.07 357.86 -5.88 -41.96 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.37 Total: 9.70 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -0.68 Total: 12.50 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.77 Total: -54.75 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.15 Total: -23.12 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 0.11 Total: -6.21 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.52 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.07 -5.88 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206403865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.831 kcal (2) G-P(sol) polarization free energy of solvation -36.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.03 seconds