Wall clock time and date at job start Tue Mar 31 2020 20:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 110.26921 * 2 1 4 4 C 1.53989 * 110.31138 * 237.91417 * 2 1 3 5 5 N 1.47900 * 107.05923 * 242.30488 * 4 2 1 6 6 C 1.46896 * 111.00040 * 214.15602 * 5 4 2 7 7 C 1.50700 * 109.46942 * 169.99708 * 6 5 4 8 8 O 1.21293 * 120.00282 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00075 * 179.97438 * 7 6 5 10 10 C 1.37104 * 120.00173 * 180.02562 * 9 7 6 11 11 H 1.08002 * 119.99666 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00001 * 180.27893 * 10 9 7 13 13 N 1.31407 * 120.00135 * 179.72366 * 12 10 9 14 14 Si 1.86800 * 120.00194 * 359.72088 * 12 10 9 15 15 H 1.48500 * 109.47210 * 89.99937 * 14 12 10 16 16 H 1.48496 * 109.47530 * 210.00374 * 14 12 10 17 17 H 1.48501 * 109.47312 * 330.00618 * 14 12 10 18 18 C 1.48541 * 105.81760 * 334.66922 * 5 4 2 19 19 C 1.54594 * 110.31157 * 122.19251 * 2 1 3 20 20 H 1.08995 * 110.72602 * 22.51707 * 19 2 1 21 21 N 1.46506 * 110.72430 * 259.41379 * 19 2 1 22 22 C 1.34770 * 119.99737 * 154.99891 * 21 19 2 23 23 O 1.21285 * 120.00464 * 0.02562 * 22 21 19 24 24 C 1.50707 * 119.99840 * 179.97438 * 22 21 19 25 25 C 1.52995 * 109.47132 * 180.02562 * 24 22 21 26 26 F 1.39905 * 109.47139 * 60.00264 * 25 24 22 27 27 F 1.39898 * 109.47122 * 179.97438 * 25 24 22 28 28 F 1.39898 * 109.47382 * 299.99910 * 25 24 22 29 29 H 1.09007 * 109.46675 * 180.63252 * 1 2 3 30 30 H 1.08997 * 109.47333 * 300.63348 * 1 2 3 31 31 H 1.09002 * 109.47517 * 60.63895 * 1 2 3 32 32 H 1.09001 * 109.91878 * 122.95214 * 4 2 1 33 33 H 1.08999 * 110.08039 * 1.74757 * 4 2 1 34 34 H 1.08994 * 109.47346 * 50.00014 * 6 5 4 35 35 H 1.08998 * 109.47279 * 289.99686 * 6 5 4 36 36 H 0.97000 * 120.00140 * 0.02562 * 9 7 6 37 37 H 0.97004 * 120.00486 * 179.97438 * 13 12 10 38 38 H 1.08995 * 110.66700 * 157.64545 * 18 5 4 39 39 H 1.08998 * 110.66599 * 280.77270 * 18 5 4 40 40 H 0.97003 * 119.99755 * 334.99758 * 21 19 2 41 41 H 1.09001 * 109.46876 * 300.00209 * 24 22 21 42 42 H 1.08997 * 109.47141 * 59.99986 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0226 0.0000 4 6 2.0645 -0.7671 -1.2235 5 7 2.8314 -1.9228 -0.7100 6 6 3.9752 -2.2245 -1.5809 7 6 4.8666 -3.2357 -0.9072 8 8 4.5777 -3.6627 0.1907 9 7 5.9848 -3.6657 -1.5246 10 6 6.7955 -4.5861 -0.9119 11 1 6.5382 -4.9663 0.0657 12 6 7.9513 -5.0250 -1.5459 13 7 8.7312 -5.9031 -0.9563 14 14 8.3967 -4.3669 -3.2364 15 1 9.2368 -3.1513 -3.0889 16 1 9.1514 -5.4020 -3.9876 17 1 7.1560 -4.0241 -3.9769 18 6 3.2856 -1.5352 0.6501 19 6 2.0666 -0.7724 1.2269 20 1 1.3174 -1.4697 1.6017 21 7 2.4827 0.1550 2.2820 22 6 2.4982 -0.2499 3.5674 23 8 2.1683 -1.3821 3.8506 24 6 2.9268 0.7039 4.6527 25 6 2.8548 -0.0010 6.0087 26 9 3.7046 -1.1123 6.0023 27 9 3.2531 0.8842 7.0161 28 9 1.5415 -0.4196 6.2476 29 1 -0.3633 -1.0277 0.0113 30 1 -0.3634 0.5236 0.8842 31 1 -0.3634 0.5039 -0.8956 32 1 2.7162 -0.1207 -1.8115 33 1 1.2348 -1.1158 -1.8384 34 1 4.5395 -1.3112 -1.7691 35 1 3.6151 -2.6303 -2.5262 36 1 6.2161 -3.3240 -2.4024 37 1 9.5379 -6.2098 -1.3990 38 1 3.5049 -2.4191 1.2489 39 1 4.1564 -0.8821 0.5933 40 1 2.7470 1.0604 2.0554 41 1 3.9502 1.0296 4.4668 42 1 2.2650 1.5699 4.6574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206403865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:13 Heat of formation + Delta-G solvation = -241.039002 kcal Electronic energy + Delta-G solvation = -29865.751850 eV Core-core repulsion = 25043.844567 eV Total energy + Delta-G solvation = -4821.907283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -51.09680 -48.61900 -48.57454 -41.40678 -40.50381 -39.23372 -36.16718 -35.56750 -33.88695 -33.71256 -32.73956 -30.14503 -28.63971 -26.76061 -25.74903 -24.67198 -22.66372 -21.81484 -21.34454 -21.19621 -20.20923 -19.73394 -19.56573 -18.63907 -17.97692 -17.57128 -17.41389 -16.77150 -16.58962 -16.35886 -15.88257 -15.65828 -15.46407 -15.35037 -15.07009 -14.98064 -14.78581 -14.74796 -14.70845 -14.66404 -14.50471 -14.37503 -14.00872 -13.76815 -13.46108 -13.19558 -13.03733 -12.98862 -12.83933 -12.49434 -12.42775 -12.17990 -11.99812 -11.83666 -11.66924 -11.49017 -11.21085 -10.36897 -10.28021 -10.07232 -9.31344 -8.42539 -6.04170 1.29073 1.34583 1.39765 1.44242 1.52080 1.93237 2.02237 2.22213 2.68893 2.71430 3.04606 3.05156 3.13391 3.32254 3.53983 3.66150 3.77865 3.96701 4.13803 4.16000 4.21220 4.24012 4.36297 4.40518 4.52672 4.60288 4.72536 4.87436 4.98942 5.09759 5.10131 5.23018 5.34850 5.47862 5.51711 5.85667 5.92792 6.10013 6.36963 6.57918 6.87324 7.10862 7.37320 7.96267 8.75410 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.002979 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.608010 B = 9395.562195 C =11259.609915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.115 0.885 4 C 0.037 3.963 5 N -0.519 5.519 6 C 0.047 3.953 7 C 0.444 3.556 8 O -0.608 6.608 9 N -0.589 5.589 10 C -0.330 4.330 11 H 0.050 0.950 12 C -0.017 4.017 13 N -0.936 5.936 14 Si 0.968 3.032 15 H -0.255 1.255 16 H -0.276 1.276 17 H -0.229 1.229 18 C 0.034 3.966 19 C 0.148 3.852 20 H 0.075 0.925 21 N -0.696 5.696 22 C 0.507 3.493 23 O -0.573 6.573 24 C -0.179 4.179 25 C 0.461 3.539 26 F -0.196 7.196 27 F -0.177 7.177 28 F -0.189 7.189 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.424 0.576 41 H 0.172 0.828 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.602 26.128 -0.089 29.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.112 4.112 3 H 0.133 0.867 4 C -0.090 4.090 5 N -0.245 5.245 6 C -0.084 4.084 7 C 0.232 3.768 8 O -0.492 6.492 9 N -0.231 5.231 10 C -0.459 4.459 11 H 0.068 0.932 12 C -0.215 4.215 13 N -0.576 5.576 14 Si 0.788 3.212 15 H -0.179 1.179 16 H -0.201 1.201 17 H -0.152 1.152 18 C -0.096 4.096 19 C 0.042 3.958 20 H 0.093 0.907 21 N -0.349 5.349 22 C 0.293 3.707 23 O -0.451 6.451 24 C -0.219 4.219 25 C 0.407 3.593 26 F -0.178 7.178 27 F -0.159 7.159 28 F -0.171 7.171 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.140 0.860 36 H 0.226 0.774 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.263 0.737 41 H 0.190 0.810 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -15.181 24.430 0.877 28.776 hybrid contribution 1.544 0.036 -0.211 1.558 sum -13.637 24.466 0.666 28.018 Atomic orbital electron populations 1.21806 0.92721 1.01891 1.03073 1.22242 0.97677 0.99871 0.91371 0.86685 1.23192 0.98580 0.90221 0.97054 1.64464 1.20489 1.37800 1.01700 1.22115 0.91370 0.97550 0.97367 1.21005 0.82697 0.86154 0.86968 1.90550 1.73960 1.61459 1.23270 1.42001 1.22159 1.39870 1.19046 1.18975 1.03957 1.19740 1.03204 0.93170 1.26171 0.94895 0.96358 1.04067 1.69817 1.14706 1.31986 1.41130 0.85325 0.80291 0.79023 0.76601 1.17912 1.20073 1.15233 1.23530 0.96116 0.98720 0.91191 1.21874 0.95144 0.91268 0.87546 0.90712 1.45599 1.67755 1.16746 1.04776 1.20537 0.77426 0.87887 0.84837 1.90877 1.48930 1.22159 1.83154 1.23047 1.11895 1.00475 0.86456 1.20292 0.73366 0.77262 0.88421 1.93217 1.71470 1.56178 1.96941 1.93204 1.90678 1.68018 1.63981 1.93188 1.37344 1.91031 1.95495 0.93762 0.91969 0.90013 0.90951 0.88720 0.89554 0.85950 0.77399 0.91118 0.92391 0.94127 0.73703 0.81006 0.79583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.89 71.98 0.64 -1.06 16 2 C -0.09 -1.31 3.32 -9.92 -0.03 -1.35 16 3 H 0.12 0.86 7.76 -2.38 -0.02 0.84 16 4 C 0.04 0.65 6.35 86.44 0.55 1.19 16 5 N -0.52 -15.44 5.26 -887.60 -4.67 -20.11 16 6 C 0.05 1.42 5.52 85.56 0.47 1.90 16 7 C 0.44 20.37 7.49 87.66 0.66 21.03 16 8 O -0.61 -34.77 13.09 -3.07 -0.04 -34.81 16 9 N -0.59 -28.03 5.09 -306.98 -1.56 -29.59 16 10 C -0.33 -19.68 10.16 84.04 0.85 -18.82 16 11 H 0.05 3.61 7.39 -2.91 -0.02 3.59 16 12 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 13 N -0.94 -57.34 13.96 21.66 0.30 -57.04 16 14 Si 0.97 38.69 27.73 68.60 1.90 40.59 16 15 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 16 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 17 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 18 C 0.03 1.11 4.99 86.65 0.43 1.54 16 19 C 0.15 3.48 2.97 46.19 0.14 3.62 16 20 H 0.07 2.30 7.26 -2.39 -0.02 2.28 16 21 N -0.70 -11.71 5.18 -436.84 -2.26 -13.97 16 22 C 0.51 11.36 7.60 87.66 0.67 12.03 16 23 O -0.57 -20.50 14.48 -3.05 -0.04 -20.55 16 24 C -0.18 -2.13 5.75 29.85 0.17 -1.96 16 25 C 0.46 9.75 2.89 71.98 0.21 9.96 16 26 F -0.20 -5.85 16.40 44.97 0.74 -5.11 16 27 F -0.18 -3.24 17.32 44.97 0.78 -2.46 16 28 F -0.19 -4.85 16.40 44.97 0.74 -4.11 16 29 H 0.04 0.74 8.13 -2.38 -0.02 0.72 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.94 7.57 -2.39 -0.02 0.92 16 33 H 0.09 1.49 7.69 -2.39 -0.02 1.47 16 34 H 0.09 2.02 7.81 -2.39 -0.02 2.00 16 35 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.39 15.12 5.77 -92.71 -0.53 14.59 16 37 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 38 H 0.06 2.73 5.97 -2.39 -0.01 2.71 16 39 H 0.04 1.27 8.02 -2.39 -0.02 1.26 16 40 H 0.42 2.89 8.39 -92.71 -0.78 2.11 16 41 H 0.17 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.19 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -93.47 357.86 0.82 -92.65 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -0.28 Total: 26.88 kcal Atomic # 6 Polarization: 22.40 SS G_CDS: 5.22 Total: 27.62 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -8.19 Total: -120.71 kcal Atomic # 8 Polarization: -55.27 SS G_CDS: -0.08 Total: -55.36 kcal Atomic # 9 Polarization: -13.93 SS G_CDS: 2.25 Total: -11.68 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 1.90 Total: 40.59 kcal Total: -93.47 0.82 -92.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206403865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.386 kcal (2) G-P(sol) polarization free energy of solvation -93.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds