Wall clock time and date at job start Tue Mar 31 2020 20:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.88737 * 2 1 4 4 C 1.54914 * 111.00205 * 236.12212 * 2 1 3 5 5 N 1.47426 * 104.82992 * 204.91932 * 4 2 1 6 6 C 1.34777 * 125.64500 * 204.16642 * 5 4 2 7 7 O 1.21275 * 120.00167 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99872 * 179.97438 * 6 5 4 9 9 C 1.50702 * 109.47143 * 179.97438 * 8 6 5 10 10 O 1.21277 * 120.00153 * 359.97438 * 9 8 6 11 11 N 1.34782 * 119.99992 * 180.02562 * 9 8 6 12 12 C 1.46491 * 119.99924 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47345 * 179.97438 * 12 11 9 14 14 F 1.39903 * 109.46512 * 60.00083 * 13 12 11 15 15 F 1.39894 * 109.47542 * 179.97438 * 13 12 11 16 16 F 1.39900 * 109.47087 * 300.00247 * 13 12 11 17 17 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 18 18 C 1.54325 * 107.40412 * 358.86539 * 17 5 4 19 19 H 1.09000 * 110.72188 * 96.24097 * 18 17 5 20 20 N 1.46495 * 110.72250 * 219.52320 * 18 17 5 21 21 C 1.36934 * 119.99717 * 273.54393 * 20 18 17 22 22 H 1.08002 * 120.00471 * 359.97438 * 21 20 18 23 23 C 1.38816 * 119.99836 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99854 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00106 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46848 * 90.00384 * 25 23 21 27 27 H 1.48497 * 109.47156 * 210.00032 * 25 23 21 28 28 H 1.48497 * 109.47207 * 330.00610 * 25 23 21 29 29 H 1.08997 * 109.47294 * 182.42358 * 1 2 3 30 30 H 1.08997 * 109.47279 * 302.43037 * 1 2 3 31 31 H 1.09006 * 109.47100 * 62.42832 * 1 2 3 32 32 H 1.08999 * 110.37121 * 86.07667 * 4 2 1 33 33 H 1.09001 * 110.45739 * 323.80279 * 4 2 1 34 34 H 1.08997 * 109.47569 * 299.99781 * 8 6 5 35 35 H 1.09007 * 109.47441 * 59.99852 * 8 6 5 36 36 H 0.96998 * 119.99964 * 359.97438 * 11 9 8 37 37 H 1.08997 * 109.47598 * 299.99638 * 12 11 9 38 38 H 1.09002 * 109.47617 * 60.00211 * 12 11 9 39 39 H 1.09002 * 109.88241 * 118.36067 * 17 5 4 40 40 H 1.09000 * 109.88049 * 239.37196 * 17 5 4 41 41 H 0.96997 * 120.00433 * 93.54551 * 20 18 17 42 42 H 0.96999 * 119.99699 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4271 -1.2428 -0.7739 6 6 4.4480 -1.5597 -1.5947 7 8 4.3014 -1.4970 -2.7969 8 6 5.7717 -1.9920 -1.0186 9 6 6.7350 -2.2871 -2.1394 10 8 6.3813 -2.1595 -3.2924 11 7 7.9893 -2.6938 -1.8604 12 6 8.9258 -2.9802 -2.9498 13 6 10.2698 -3.4192 -2.3649 14 9 10.0879 -4.5707 -1.5916 15 9 11.1640 -3.6932 -3.4053 16 9 10.7861 -2.3956 -1.5631 17 6 3.4674 -1.2745 0.6954 18 6 2.0879 -0.8070 1.2052 19 1 1.4482 -1.6616 1.4256 20 7 2.2342 0.0505 2.3840 21 6 2.3116 -0.5083 3.6317 22 1 2.2644 -1.5811 3.7469 23 6 2.4498 0.3042 4.7487 24 7 2.5247 -0.2329 5.9480 25 14 2.5307 2.1598 4.5497 26 1 1.1590 2.7250 4.6158 27 1 3.3576 2.7389 5.6387 28 1 3.1395 2.4907 3.2363 29 1 -0.3634 -1.0267 0.0435 30 1 -0.3634 0.5511 0.8674 31 1 -0.3633 0.4757 -0.9110 32 1 2.1559 -0.1712 -2.0838 33 1 1.4524 -1.6698 -1.4050 34 1 6.1739 -1.1945 -0.3939 35 1 5.6301 -2.8892 -0.4160 36 1 8.2721 -2.7963 -0.9382 37 1 8.5235 -3.7774 -3.5748 38 1 9.0679 -2.0829 -3.5521 39 1 3.6650 -2.2899 1.0391 40 1 4.2444 -0.6023 1.0595 41 1 2.2762 1.0140 2.2807 42 1 2.6208 0.3349 6.7286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001216125006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:10 Heat of formation + Delta-G solvation = -204.443672 kcal Electronic energy + Delta-G solvation = -29183.077090 eV Core-core repulsion = 24362.756700 eV Total energy + Delta-G solvation = -4820.320390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.63869 -48.15287 -48.11201 -40.52617 -39.35513 -37.51638 -35.33019 -34.22871 -32.77778 -31.41785 -31.04159 -29.13617 -27.94992 -26.15150 -23.99797 -23.70746 -21.74256 -21.15256 -20.24718 -19.38921 -19.10756 -18.89846 -18.29681 -17.66579 -17.36395 -16.50868 -16.15731 -15.93849 -15.69503 -15.17570 -14.99795 -14.78358 -14.68503 -14.53806 -14.29080 -14.26403 -14.24594 -13.83556 -13.65927 -13.37296 -13.25398 -13.22222 -12.69117 -12.58110 -12.43398 -12.26794 -11.99651 -11.74869 -11.51273 -11.19042 -10.88252 -10.70408 -10.43727 -10.34511 -10.07384 -9.72970 -9.72243 -9.49790 -9.09539 -8.41809 -7.47677 -5.91708 -3.29992 1.98053 2.31970 2.39202 2.75644 3.16129 3.18374 3.27110 3.30416 3.36920 3.49159 3.73349 4.25659 4.45530 4.49218 4.63513 4.80864 4.90909 4.93997 4.99442 5.05646 5.11691 5.39004 5.45340 5.62727 5.65414 5.68121 5.72123 5.81557 6.02637 6.06305 6.21916 6.29311 6.40310 6.44898 6.68432 6.87989 7.66448 7.82242 7.83152 8.26988 8.31830 9.03429 9.75773 9.93824 11.25815 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.012714 B = 0.002542 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.687267 B =11013.153878 C =12615.520304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 H 0.081 0.919 4 C 0.117 3.883 5 N -0.617 5.617 6 C 0.528 3.472 7 O -0.511 6.511 8 C -0.160 4.160 9 C 0.523 3.477 10 O -0.484 6.484 11 N -0.738 5.738 12 C 0.081 3.919 13 C 0.448 3.552 14 F -0.178 7.178 15 F -0.174 7.174 16 F -0.177 7.177 17 C 0.071 3.929 18 C 0.183 3.817 19 H 0.075 0.925 20 N -0.736 5.736 21 C -0.254 4.254 22 H 0.092 0.908 23 C 0.011 3.989 24 N -0.928 5.928 25 Si 0.883 3.117 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.277 1.277 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.408 0.592 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.364 0.636 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.125 -5.365 -15.790 20.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.137 4.137 3 H 0.099 0.901 4 C -0.006 4.006 5 N -0.352 5.352 6 C 0.314 3.686 7 O -0.385 6.385 8 C -0.202 4.202 9 C 0.308 3.692 10 O -0.355 6.355 11 N -0.396 5.396 12 C -0.045 4.045 13 C 0.394 3.606 14 F -0.159 7.159 15 F -0.155 7.155 16 F -0.159 7.159 17 C -0.055 4.055 18 C 0.071 3.929 19 H 0.093 0.907 20 N -0.378 5.378 21 C -0.383 4.383 22 H 0.110 0.890 23 C -0.186 4.186 24 N -0.575 5.575 25 Si 0.713 3.287 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.203 1.203 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.244 0.756 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.198 0.802 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.860 -5.417 -17.119 20.985 hybrid contribution 0.726 1.161 0.855 1.614 sum 11.586 -4.256 -16.264 20.418 Atomic orbital electron populations 1.21621 0.93649 1.02214 1.01761 1.22709 0.96526 0.99660 0.94849 0.90066 1.22216 0.82639 0.98171 0.97545 1.48506 1.12031 1.66762 1.07898 1.19440 0.84247 0.78570 0.86342 1.90831 1.82144 1.51788 1.13750 1.21537 0.94087 1.06044 0.98551 1.20107 0.81279 0.76973 0.90803 1.90886 1.75579 1.48105 1.20899 1.45720 1.12447 1.72084 1.09331 1.22397 0.84761 1.05685 0.91656 1.20561 0.88004 0.75447 0.76606 1.93239 1.95337 1.51055 1.76274 1.93227 1.70550 1.93818 1.57948 1.93240 1.88711 1.59206 1.74726 1.23277 1.03043 1.01614 0.77589 1.21251 0.91885 0.93790 0.85960 0.90669 1.42707 1.88627 1.04100 1.02342 1.19049 1.43615 0.93995 0.81648 0.88972 1.24680 1.01414 0.97394 0.95114 1.69696 1.56073 1.34356 0.97374 0.86591 0.77902 0.87151 0.77073 1.20935 1.21653 1.20284 0.92399 0.91589 0.92995 0.90851 0.91441 0.85599 0.85619 0.75639 0.86753 0.86782 0.91741 0.90861 0.80235 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.30 37.16 0.35 -1.32 16 2 C -0.12 -1.62 3.26 -88.33 -0.29 -1.91 16 3 H 0.08 1.16 8.01 -51.93 -0.42 0.75 16 4 C 0.12 1.58 6.38 -2.53 -0.02 1.57 16 5 N -0.62 -8.74 3.33 -170.52 -0.57 -9.31 16 6 C 0.53 7.80 7.84 -10.99 -0.09 7.72 16 7 O -0.51 -9.59 14.43 -18.95 -0.27 -9.87 16 8 C -0.16 -1.65 5.38 -29.04 -0.16 -1.80 16 9 C 0.52 5.95 7.82 -10.98 -0.09 5.87 16 10 O -0.48 -7.78 14.18 -18.96 -0.27 -8.05 16 11 N -0.74 -5.71 5.42 -60.30 -0.33 -6.04 16 12 C 0.08 0.55 5.64 -4.04 -0.02 0.52 16 13 C 0.45 3.03 3.11 37.16 0.12 3.15 16 14 F -0.18 -1.34 17.18 2.25 0.04 -1.30 16 15 F -0.17 -1.29 17.32 2.25 0.04 -1.25 16 16 F -0.18 -1.36 17.18 2.25 0.04 -1.32 16 17 C 0.07 1.03 6.23 -3.07 -0.02 1.01 16 18 C 0.18 3.00 3.08 -65.96 -0.20 2.79 16 19 H 0.08 1.27 8.00 -51.93 -0.42 0.85 16 20 N -0.74 -15.23 4.98 -51.52 -0.26 -15.49 16 21 C -0.25 -6.41 10.46 -15.06 -0.16 -6.57 16 22 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 23 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 24 N -0.93 -27.33 13.97 55.49 0.78 -26.56 16 25 Si 0.88 20.54 27.74 -169.99 -4.71 15.83 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.02 6.52 56.52 0.37 -5.65 16 29 H 0.06 0.68 8.11 -51.93 -0.42 0.25 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.01 8.04 -51.93 -0.42 0.60 16 33 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 34 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.41 2.27 8.36 -40.82 -0.34 1.93 16 37 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.12 8.03 -51.93 -0.42 0.70 16 41 H 0.36 7.54 5.58 -40.82 -0.23 7.31 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 365.97 15.07 5.52 5.52 Total: -1.00 -33.91 365.97 -6.29 -40.20 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.62 Total: 6.42 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -0.67 Total: 11.21 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.38 Total: -57.39 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.54 Total: -17.92 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.12 Total: -3.87 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.71 Total: 15.83 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.91 -6.29 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216125006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.242 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds