Wall clock time and date at job start Tue Mar 31 2020 20:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.88737 * 2 1 4 4 C 1.54914 * 111.00205 * 236.12212 * 2 1 3 5 5 N 1.47426 * 104.82992 * 204.91932 * 4 2 1 6 6 C 1.34777 * 125.64500 * 204.16642 * 5 4 2 7 7 O 1.21275 * 120.00167 * 359.97438 * 6 5 4 8 8 C 1.50694 * 119.99872 * 179.97438 * 6 5 4 9 9 C 1.50702 * 109.47143 * 179.97438 * 8 6 5 10 10 O 1.21277 * 120.00153 * 359.97438 * 9 8 6 11 11 N 1.34782 * 119.99992 * 180.02562 * 9 8 6 12 12 C 1.46491 * 119.99924 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47345 * 179.97438 * 12 11 9 14 14 F 1.39903 * 109.46512 * 60.00083 * 13 12 11 15 15 F 1.39894 * 109.47542 * 179.97438 * 13 12 11 16 16 F 1.39900 * 109.47087 * 300.00247 * 13 12 11 17 17 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 18 18 C 1.54325 * 107.40412 * 358.86539 * 17 5 4 19 19 H 1.09000 * 110.72188 * 96.24097 * 18 17 5 20 20 N 1.46495 * 110.72250 * 219.52320 * 18 17 5 21 21 C 1.36934 * 119.99717 * 273.54393 * 20 18 17 22 22 H 1.08002 * 120.00471 * 359.97438 * 21 20 18 23 23 C 1.38816 * 119.99836 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99854 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 120.00106 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46848 * 90.00384 * 25 23 21 27 27 H 1.48497 * 109.47156 * 210.00032 * 25 23 21 28 28 H 1.48497 * 109.47207 * 330.00610 * 25 23 21 29 29 H 1.08997 * 109.47294 * 182.42358 * 1 2 3 30 30 H 1.08997 * 109.47279 * 302.43037 * 1 2 3 31 31 H 1.09006 * 109.47100 * 62.42832 * 1 2 3 32 32 H 1.08999 * 110.37121 * 86.07667 * 4 2 1 33 33 H 1.09001 * 110.45739 * 323.80279 * 4 2 1 34 34 H 1.08997 * 109.47569 * 299.99781 * 8 6 5 35 35 H 1.09007 * 109.47441 * 59.99852 * 8 6 5 36 36 H 0.96998 * 119.99964 * 359.97438 * 11 9 8 37 37 H 1.08997 * 109.47598 * 299.99638 * 12 11 9 38 38 H 1.09002 * 109.47617 * 60.00211 * 12 11 9 39 39 H 1.09002 * 109.88241 * 118.36067 * 17 5 4 40 40 H 1.09000 * 109.88049 * 239.37196 * 17 5 4 41 41 H 0.96997 * 120.00433 * 93.54551 * 20 18 17 42 42 H 0.96999 * 119.99699 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4271 -1.2428 -0.7739 6 6 4.4480 -1.5597 -1.5947 7 8 4.3014 -1.4970 -2.7969 8 6 5.7717 -1.9920 -1.0186 9 6 6.7350 -2.2871 -2.1394 10 8 6.3813 -2.1595 -3.2924 11 7 7.9893 -2.6938 -1.8604 12 6 8.9258 -2.9802 -2.9498 13 6 10.2698 -3.4192 -2.3649 14 9 10.0879 -4.5707 -1.5916 15 9 11.1640 -3.6932 -3.4053 16 9 10.7861 -2.3956 -1.5631 17 6 3.4674 -1.2745 0.6954 18 6 2.0879 -0.8070 1.2052 19 1 1.4482 -1.6616 1.4256 20 7 2.2342 0.0505 2.3840 21 6 2.3116 -0.5083 3.6317 22 1 2.2644 -1.5811 3.7469 23 6 2.4498 0.3042 4.7487 24 7 2.5247 -0.2329 5.9480 25 14 2.5307 2.1598 4.5497 26 1 1.1590 2.7250 4.6158 27 1 3.3576 2.7389 5.6387 28 1 3.1395 2.4907 3.2363 29 1 -0.3634 -1.0267 0.0435 30 1 -0.3634 0.5511 0.8674 31 1 -0.3633 0.4757 -0.9110 32 1 2.1559 -0.1712 -2.0838 33 1 1.4524 -1.6698 -1.4050 34 1 6.1739 -1.1945 -0.3939 35 1 5.6301 -2.8892 -0.4160 36 1 8.2721 -2.7963 -0.9382 37 1 8.5235 -3.7774 -3.5748 38 1 9.0679 -2.0829 -3.5521 39 1 3.6650 -2.2899 1.0391 40 1 4.2444 -0.6023 1.0595 41 1 2.2762 1.0140 2.2807 42 1 2.6208 0.3349 6.7286 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216125006.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:05 Heat of formation + Delta-G solvation = -227.825794 kcal Electronic energy + Delta-G solvation = -29184.091015 eV Core-core repulsion = 24362.756700 eV Total energy + Delta-G solvation = -4821.334315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -51.22126 -48.73708 -48.69881 -41.54723 -40.40776 -38.74046 -36.16463 -35.85153 -34.05793 -32.95831 -32.12379 -29.87325 -29.37510 -27.16760 -25.58296 -24.44423 -22.97271 -22.12580 -21.55904 -20.39011 -19.68394 -19.52192 -19.45723 -19.06239 -18.37988 -17.58140 -17.05262 -16.91552 -16.67473 -16.28903 -16.01839 -15.79523 -15.51606 -15.48910 -15.12505 -14.91325 -14.85081 -14.84236 -14.77488 -14.62012 -14.49155 -14.26213 -14.22476 -13.69094 -13.51105 -13.14669 -12.99481 -12.96572 -12.89448 -12.84790 -12.23251 -12.09716 -11.89481 -11.75602 -11.39901 -11.33432 -10.95936 -10.61254 -10.45681 -9.59932 -9.31782 -7.97351 -5.31884 1.31753 1.43696 1.45488 1.47026 1.52615 1.65013 1.70465 2.17676 2.52820 2.61748 2.93224 3.13745 3.27600 3.33505 3.52711 3.66636 3.86179 3.88624 4.08769 4.15184 4.27404 4.28063 4.36040 4.40005 4.47558 4.63375 4.72020 4.91554 4.96422 4.99710 5.12064 5.14643 5.28260 5.32312 5.50300 5.83525 6.20249 6.26307 6.53335 7.01574 7.11511 7.22396 7.86355 8.04384 9.23428 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.012714 B = 0.002542 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.687267 B =11013.153878 C =12615.520304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 H 0.080 0.920 4 C 0.117 3.883 5 N -0.615 5.615 6 C 0.522 3.478 7 O -0.554 6.554 8 C -0.155 4.155 9 C 0.526 3.474 10 O -0.537 6.537 11 N -0.722 5.722 12 C 0.080 3.920 13 C 0.458 3.542 14 F -0.180 7.180 15 F -0.177 7.177 16 F -0.181 7.181 17 C 0.082 3.918 18 C 0.173 3.827 19 H 0.071 0.929 20 N -0.738 5.738 21 C -0.224 4.224 22 H 0.066 0.934 23 C -0.058 4.058 24 N -0.981 5.981 25 Si 0.946 3.054 26 H -0.283 1.283 27 H -0.302 1.302 28 H -0.250 1.250 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.421 0.579 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.367 0.633 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.719 -4.952 -16.780 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.126 4.126 3 H 0.098 0.902 4 C -0.006 4.006 5 N -0.349 5.349 6 C 0.310 3.690 7 O -0.432 6.432 8 C -0.197 4.197 9 C 0.312 3.688 10 O -0.412 6.412 11 N -0.380 5.380 12 C -0.045 4.045 13 C 0.404 3.596 14 F -0.162 7.162 15 F -0.158 7.158 16 F -0.163 7.163 17 C -0.044 4.044 18 C 0.063 3.937 19 H 0.089 0.911 20 N -0.380 5.380 21 C -0.355 4.355 22 H 0.084 0.916 23 C -0.250 4.250 24 N -0.632 5.632 25 Si 0.774 3.226 26 H -0.210 1.210 27 H -0.229 1.229 28 H -0.174 1.174 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.169 0.831 35 H 0.174 0.826 36 H 0.259 0.741 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.201 0.799 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.481 -5.020 -18.137 22.044 hybrid contribution 0.534 0.921 1.099 1.530 sum 12.015 -4.100 -17.037 21.247 Atomic orbital electron populations 1.21611 0.92453 1.02677 1.02253 1.22622 0.97474 0.99115 0.93341 0.90167 1.22251 0.82661 0.98489 0.97187 1.48545 1.12325 1.66468 1.07591 1.20131 0.85389 0.77612 0.85820 1.90821 1.83009 1.53658 1.15666 1.21605 0.91514 1.08112 0.98422 1.20255 0.82067 0.76291 0.90205 1.90876 1.76711 1.50732 1.22843 1.45535 1.11521 1.70542 1.10366 1.22466 0.84450 1.06187 0.91424 1.20431 0.87760 0.75144 0.76300 1.93236 1.95335 1.51265 1.76362 1.93225 1.70643 1.93823 1.58103 1.93236 1.88790 1.59382 1.74844 1.22994 1.01408 1.02236 0.77733 1.21442 0.93153 0.93618 0.85483 0.91149 1.42651 1.88725 1.04634 1.01988 1.19010 1.40300 0.92863 0.83350 0.91564 1.25390 1.02791 1.01909 0.94860 1.69865 1.59161 1.35858 0.98286 0.85552 0.77635 0.81672 0.77719 1.20987 1.22923 1.17436 0.91846 0.92849 0.90906 0.91039 0.90488 0.83052 0.82639 0.74111 0.86204 0.86331 0.90495 0.90924 0.79944 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.30 71.98 0.67 -2.29 16 2 C -0.11 -2.68 3.26 -9.31 -0.03 -2.71 16 3 H 0.08 2.09 8.01 -2.39 -0.02 2.07 16 4 C 0.12 2.91 6.38 86.86 0.55 3.47 16 5 N -0.61 -16.05 3.33 -811.80 -2.70 -18.75 16 6 C 0.52 14.51 7.84 87.66 0.69 15.20 16 7 O -0.55 -20.49 14.43 20.43 0.29 -20.20 16 8 C -0.15 -2.78 5.38 29.10 0.16 -2.62 16 9 C 0.53 11.06 7.82 87.66 0.69 11.75 16 10 O -0.54 -17.01 14.18 20.42 0.29 -16.72 16 11 N -0.72 -9.64 5.42 -463.06 -2.51 -12.15 16 12 C 0.08 0.96 5.64 86.38 0.49 1.45 16 13 C 0.46 5.43 3.11 71.98 0.22 5.65 16 14 F -0.18 -2.39 17.18 44.97 0.77 -1.62 16 15 F -0.18 -2.37 17.32 44.97 0.78 -1.59 16 16 F -0.18 -2.45 17.18 44.97 0.77 -1.67 16 17 C 0.08 2.17 6.23 86.73 0.54 2.71 16 18 C 0.17 5.32 3.08 46.27 0.14 5.47 16 19 H 0.07 2.27 8.00 -2.39 -0.02 2.25 16 20 N -0.74 -29.19 4.98 -316.92 -1.58 -30.77 16 21 C -0.22 -11.23 10.46 84.03 0.88 -10.35 16 22 H 0.07 3.62 8.06 -2.91 -0.02 3.60 16 23 C -0.06 -3.11 5.50 84.86 0.47 -2.65 16 24 N -0.98 -58.86 13.97 21.65 0.30 -58.55 16 25 Si 0.95 41.96 27.74 68.60 1.90 43.86 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.25 -9.82 6.52 99.48 0.65 -9.17 16 29 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.07 1.85 8.04 -2.39 -0.02 1.83 16 33 H 0.08 1.79 8.04 -2.39 -0.02 1.77 16 34 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.16 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.42 3.51 8.36 -92.71 -0.78 2.73 16 37 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.07 1.99 8.03 -2.39 -0.02 1.97 16 41 H 0.37 14.24 5.58 -92.71 -0.52 13.72 16 42 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -74.44 365.97 3.51 -70.92 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.28 Total: 22.16 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: 5.46 Total: 25.08 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -6.48 Total: -120.22 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: 0.58 Total: -36.91 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 2.32 Total: -4.89 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.90 Total: 43.86 kcal Total: -74.44 3.51 -70.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216125006.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.901 kcal (2) G-P(sol) polarization free energy of solvation -74.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds