Wall clock time and date at job start Tue Mar 31 2020 21:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47083 * 2 1 4 4 N 1.46497 * 109.47048 * 120.00221 * 2 1 3 5 5 C 1.34776 * 119.99926 * 274.99685 * 4 2 1 6 6 O 1.21606 * 120.00241 * 0.02562 * 5 4 2 7 7 C 1.47384 * 119.99930 * 180.02562 * 5 4 2 8 8 C 1.47013 * 127.19260 * 180.02562 * 7 5 4 9 9 C 1.34177 * 105.95600 * 179.97438 * 8 7 5 10 10 O 1.34222 * 109.12416 * 359.97438 * 9 8 7 11 11 C 1.33647 * 110.90499 * 359.76246 * 10 9 8 12 12 C 1.50697 * 109.46897 * 240.00424 * 2 1 3 13 13 O 1.21291 * 119.99881 * 239.99884 * 12 2 1 14 14 N 1.34778 * 120.00333 * 59.99888 * 12 2 1 15 15 C 1.46494 * 120.00110 * 180.02562 * 14 12 2 16 16 H 1.09004 * 110.64679 * 36.68334 * 15 14 12 17 17 C 1.54331 * 110.72091 * 273.54786 * 15 14 12 18 18 N 1.47027 * 107.26870 * 263.83223 * 17 15 14 19 19 C 1.36931 * 125.64779 * 181.02448 * 18 17 15 20 20 H 1.08001 * 119.99865 * 10.73967 * 19 18 17 21 21 C 1.38811 * 120.00089 * 190.75026 * 19 18 17 22 22 N 1.31621 * 119.99858 * 9.06041 * 21 19 18 23 23 Si 1.86794 * 120.00102 * 188.79444 * 21 19 18 24 24 H 1.48501 * 109.47020 * 265.28171 * 23 21 19 25 25 H 1.48500 * 109.47256 * 25.28337 * 23 21 19 26 26 H 1.48499 * 109.47251 * 145.28729 * 23 21 19 27 27 C 1.47430 * 108.70230 * 1.28087 * 18 17 15 28 28 C 1.55125 * 104.72361 * 335.55882 * 27 18 17 29 29 H 1.09003 * 111.22543 * 279.17472 * 28 27 18 30 30 O 1.42893 * 110.90796 * 155.27289 * 28 27 18 31 31 H 1.08998 * 109.47207 * 59.99658 * 1 2 3 32 32 H 1.09002 * 109.47083 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46754 * 299.99586 * 1 2 3 34 34 H 0.97007 * 120.00089 * 95.00047 * 4 2 1 35 35 H 1.08003 * 127.02631 * 359.93767 * 8 7 5 36 36 H 1.08004 * 125.44101 * 180.02562 * 9 8 7 37 37 H 1.07998 * 125.80180 * 180.26776 * 11 10 9 38 38 H 0.96998 * 119.99785 * 359.97438 * 14 12 2 39 39 H 1.08995 * 109.88435 * 144.41291 * 17 15 14 40 40 H 1.09004 * 110.00812 * 23.31548 * 17 15 14 41 41 H 0.96996 * 119.99990 * 179.73013 * 22 21 19 42 42 H 1.09006 * 110.36387 * 94.48345 * 27 18 17 43 43 H 1.08994 * 110.36753 * 216.80453 * 27 18 17 44 44 H 0.96709 * 113.99768 * 67.97648 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8575 1.1615 2.4119 7 6 2.6389 -0.7130 3.5603 8 6 2.8386 -0.1387 4.8988 9 6 3.2956 -1.1405 5.6656 10 8 3.3892 -2.2549 4.9233 11 6 2.9977 -2.0249 3.6664 12 6 2.0323 -0.7103 -1.2305 13 8 2.7297 -1.6965 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1945 -0.9407 -3.6508 16 1 2.2103 -2.0190 -3.4922 17 6 3.5951 -0.4265 -4.0453 18 7 3.4072 0.6028 -5.0783 19 6 4.4079 1.2935 -5.7080 20 1 5.4357 0.9841 -5.5884 21 6 4.1013 2.3916 -6.4999 22 7 2.8783 2.8781 -6.5054 23 14 5.4262 3.1835 -7.5519 24 1 6.0290 4.3227 -6.8142 25 1 6.4779 2.1815 -7.8606 26 1 4.8250 3.6760 -8.8173 27 6 1.9627 0.7722 -5.3195 28 6 1.3297 -0.5762 -4.8863 29 1 1.4297 -1.3284 -5.6688 30 8 -0.0402 -0.4019 -4.5192 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 2.2491 -1.6319 1.1525 35 1 2.6554 0.8813 5.2028 36 1 3.5471 -1.0629 6.7131 37 1 2.9722 -2.7532 2.8693 38 1 1.1488 0.5386 -2.5436 39 1 4.1926 -1.2465 -4.4435 40 1 4.0918 0.0064 -3.1769 41 1 2.6651 3.6479 -7.0557 42 1 1.5704 1.5898 -4.7144 43 1 1.7737 0.9573 -6.3769 44 1 -0.6196 -0.1730 -5.2589 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219683910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:45 Heat of formation + Delta-G solvation = -70.800151 kcal Electronic energy + Delta-G solvation = -29166.899990 eV Core-core repulsion = 24894.231558 eV Total energy + Delta-G solvation = -4272.668432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.81970 -40.35420 -39.19327 -37.86975 -35.20716 -34.97551 -33.94846 -33.21754 -31.93281 -31.00152 -29.61526 -28.39332 -27.18560 -25.14727 -24.46488 -23.30580 -21.76368 -20.74697 -20.54843 -20.24239 -19.82061 -18.94423 -17.29783 -17.06360 -16.74833 -16.50450 -16.39092 -15.94454 -15.51925 -15.16582 -14.96129 -14.74269 -14.52846 -14.01577 -13.86106 -13.62294 -13.19613 -13.13665 -12.88526 -12.76107 -12.67659 -12.41979 -12.40621 -12.29626 -11.70734 -11.39690 -11.26461 -10.95722 -10.88093 -10.29694 -10.20882 -10.18988 -10.10543 -9.93285 -9.74596 -9.33744 -9.29680 -9.09775 -8.77860 -8.67175 -6.93083 -5.85399 -3.19008 1.07180 1.79360 2.59183 2.70004 2.77273 3.18893 3.34481 3.40696 3.42431 3.46580 4.29520 4.32543 4.38828 4.49488 4.70344 4.83260 4.96645 5.08258 5.17748 5.22003 5.31451 5.36707 5.46321 5.53488 5.59162 5.60887 5.70459 5.73698 5.97768 6.01939 6.04644 6.11717 6.19223 6.38210 6.58860 6.63208 6.87320 7.19192 7.33822 7.37453 7.64882 7.70497 7.95296 8.05539 8.12926 8.33573 9.07617 9.68944 10.33863 11.27637 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016236 B = 0.002470 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.137894 B =11331.290607 C =12020.679234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.126 3.874 3 H 0.117 0.883 4 N -0.707 5.707 5 C 0.590 3.410 6 O -0.535 6.535 7 C -0.234 4.234 8 C -0.164 4.164 9 C -0.043 4.043 10 O -0.175 6.175 11 C 0.025 3.975 12 C 0.513 3.487 13 O -0.550 6.550 14 N -0.689 5.689 15 C 0.146 3.854 16 H 0.092 0.908 17 C 0.125 3.875 18 N -0.599 5.599 19 C -0.230 4.230 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.280 1.280 26 H -0.289 1.289 27 C 0.149 3.851 28 C 0.062 3.938 29 H 0.072 0.928 30 O -0.565 6.565 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.407 0.593 35 H 0.160 0.840 36 H 0.209 0.791 37 H 0.213 0.787 38 H 0.409 0.591 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.254 0.746 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.052 -10.155 17.611 21.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.018 3.982 3 H 0.134 0.866 4 N -0.361 5.361 5 C 0.378 3.622 6 O -0.413 6.413 7 C -0.238 4.238 8 C -0.183 4.183 9 C -0.109 4.109 10 O -0.069 6.069 11 C -0.046 4.046 12 C 0.297 3.703 13 O -0.428 6.428 14 N -0.339 5.339 15 C 0.041 3.959 16 H 0.110 0.890 17 C -0.002 4.002 18 N -0.326 5.326 19 C -0.358 4.358 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.205 1.205 26 H -0.216 1.216 27 C 0.023 3.977 28 C 0.002 3.998 29 H 0.090 0.910 30 O -0.369 6.369 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.243 0.757 35 H 0.178 0.822 36 H 0.226 0.774 37 H 0.230 0.770 38 H 0.244 0.756 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.091 0.909 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -5.407 -10.243 18.259 21.623 hybrid contribution 0.345 0.855 -1.317 1.608 sum -5.062 -9.388 16.943 20.020 Atomic orbital electron populations 1.22122 0.92536 1.03112 1.03835 1.20773 0.95838 0.98291 0.83280 0.86564 1.45555 1.67551 1.14577 1.08396 1.17223 0.77126 0.86067 0.81804 1.90798 1.50276 1.15299 1.84899 1.21490 1.12042 0.94536 0.95771 1.22795 1.03621 1.00961 0.90964 1.23963 1.05692 0.83431 0.97776 1.83803 1.66283 1.36859 1.19995 1.24547 0.97795 0.96801 0.85421 1.20393 0.80347 0.84679 0.84844 1.90660 1.38610 1.26859 1.86684 1.45605 1.52109 1.31753 1.04426 1.22016 0.94038 0.96714 0.83169 0.88982 1.21763 0.93147 0.92660 0.92595 1.44319 1.02117 1.43576 1.42633 1.19035 0.87574 1.06842 1.22379 0.90417 1.24837 0.97014 0.97197 1.01221 1.69919 1.18245 1.25509 1.42957 0.86089 0.80603 0.79221 0.79782 1.21532 1.20516 1.21567 1.22075 0.83786 0.90609 1.01241 1.23720 0.80872 1.00194 0.95029 0.91006 1.86336 1.18450 1.93209 1.38950 0.90360 0.91799 0.90930 0.75667 0.82226 0.77443 0.77041 0.75556 0.94545 0.94949 0.93605 0.94554 0.90877 0.77351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.38 37.16 0.35 -1.38 16 2 C 0.13 1.65 2.98 -69.08 -0.21 1.44 16 3 H 0.12 1.65 7.58 -51.93 -0.39 1.25 16 4 N -0.71 -8.58 4.94 -56.02 -0.28 -8.86 16 5 C 0.59 7.90 7.78 -12.54 -0.10 7.80 16 6 O -0.54 -8.95 16.65 5.27 0.09 -8.86 16 7 C -0.23 -2.57 6.31 -103.27 -0.65 -3.22 16 8 C -0.16 -1.58 11.01 -37.46 -0.41 -1.99 16 9 C -0.04 -0.31 12.03 29.30 0.35 0.04 16 10 O -0.17 -1.47 10.52 7.65 0.08 -1.39 16 11 C 0.02 0.21 11.61 30.08 0.35 0.56 16 12 C 0.51 7.84 7.22 -10.99 -0.08 7.76 16 13 O -0.55 -9.54 15.56 5.55 0.09 -9.45 16 14 N -0.69 -10.90 4.67 -52.03 -0.24 -11.15 16 15 C 0.15 2.54 3.14 -66.10 -0.21 2.33 16 16 H 0.09 1.56 7.69 -51.93 -0.40 1.16 16 17 C 0.13 2.61 6.98 -3.06 -0.02 2.59 16 18 N -0.60 -14.63 3.39 -169.92 -0.58 -15.21 16 19 C -0.23 -6.26 10.24 -15.06 -0.15 -6.41 16 20 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 21 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 22 N -0.92 -25.88 10.68 55.49 0.59 -25.29 16 23 Si 0.91 21.63 29.56 -169.99 -5.03 16.60 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.15 3.27 5.13 -2.41 -0.01 3.26 16 28 C 0.06 1.06 4.23 -24.47 -0.10 0.95 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 O -0.56 -8.15 12.63 -35.23 -0.44 -8.60 16 31 H 0.08 0.80 7.56 -51.93 -0.39 0.41 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.41 4.30 6.76 -40.82 -0.28 4.02 16 35 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.21 0.66 8.06 -52.48 -0.42 0.24 16 37 H 0.21 1.09 7.47 -52.49 -0.39 0.69 16 38 H 0.41 6.25 7.61 -40.82 -0.31 5.94 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.03 0.73 8.05 -51.93 -0.42 0.31 16 41 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 43 H 0.07 1.79 6.95 -51.93 -0.36 1.43 16 44 H 0.38 4.10 9.12 45.56 0.42 4.52 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -34.60 375.09 -6.09 -40.69 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Atomic # 6 Polarization: 14.47 SS G_CDS: -0.99 Total: 13.48 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.50 Total: -60.50 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.19 Total: -28.30 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.60 -6.09 -40.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219683910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.109 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds