Wall clock time and date at job start Tue Mar 31 2020 21:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47083 * 2 1 4 4 N 1.46497 * 109.47048 * 120.00221 * 2 1 3 5 5 C 1.34776 * 119.99926 * 274.99685 * 4 2 1 6 6 O 1.21606 * 120.00241 * 0.02562 * 5 4 2 7 7 C 1.47384 * 119.99930 * 180.02562 * 5 4 2 8 8 C 1.47013 * 127.19260 * 180.02562 * 7 5 4 9 9 C 1.34177 * 105.95600 * 179.97438 * 8 7 5 10 10 O 1.34222 * 109.12416 * 359.97438 * 9 8 7 11 11 C 1.33647 * 110.90499 * 359.76246 * 10 9 8 12 12 C 1.50697 * 109.46897 * 240.00424 * 2 1 3 13 13 O 1.21291 * 119.99881 * 239.99884 * 12 2 1 14 14 N 1.34778 * 120.00333 * 59.99888 * 12 2 1 15 15 C 1.46494 * 120.00110 * 180.02562 * 14 12 2 16 16 H 1.09004 * 110.64679 * 36.68334 * 15 14 12 17 17 C 1.54331 * 110.72091 * 273.54786 * 15 14 12 18 18 N 1.47027 * 107.26870 * 263.83223 * 17 15 14 19 19 C 1.36931 * 125.64779 * 181.02448 * 18 17 15 20 20 H 1.08001 * 119.99865 * 10.73967 * 19 18 17 21 21 C 1.38811 * 120.00089 * 190.75026 * 19 18 17 22 22 N 1.31621 * 119.99858 * 9.06041 * 21 19 18 23 23 Si 1.86794 * 120.00102 * 188.79444 * 21 19 18 24 24 H 1.48501 * 109.47020 * 265.28171 * 23 21 19 25 25 H 1.48500 * 109.47256 * 25.28337 * 23 21 19 26 26 H 1.48499 * 109.47251 * 145.28729 * 23 21 19 27 27 C 1.47430 * 108.70230 * 1.28087 * 18 17 15 28 28 C 1.55125 * 104.72361 * 335.55882 * 27 18 17 29 29 H 1.09003 * 111.22543 * 279.17472 * 28 27 18 30 30 O 1.42893 * 110.90796 * 155.27289 * 28 27 18 31 31 H 1.08998 * 109.47207 * 59.99658 * 1 2 3 32 32 H 1.09002 * 109.47083 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46754 * 299.99586 * 1 2 3 34 34 H 0.97007 * 120.00089 * 95.00047 * 4 2 1 35 35 H 1.08003 * 127.02631 * 359.93767 * 8 7 5 36 36 H 1.08004 * 125.44101 * 180.02562 * 9 8 7 37 37 H 1.07998 * 125.80180 * 180.26776 * 11 10 9 38 38 H 0.96998 * 119.99785 * 359.97438 * 14 12 2 39 39 H 1.08995 * 109.88435 * 144.41291 * 17 15 14 40 40 H 1.09004 * 110.00812 * 23.31548 * 17 15 14 41 41 H 0.96996 * 119.99990 * 179.73013 * 22 21 19 42 42 H 1.09006 * 110.36387 * 94.48345 * 27 18 17 43 43 H 1.08994 * 110.36753 * 216.80453 * 27 18 17 44 44 H 0.96709 * 113.99768 * 67.97648 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8575 1.1615 2.4119 7 6 2.6389 -0.7130 3.5603 8 6 2.8386 -0.1387 4.8988 9 6 3.2956 -1.1405 5.6656 10 8 3.3892 -2.2549 4.9233 11 6 2.9977 -2.0249 3.6664 12 6 2.0323 -0.7103 -1.2305 13 8 2.7297 -1.6965 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1945 -0.9407 -3.6508 16 1 2.2103 -2.0190 -3.4922 17 6 3.5951 -0.4265 -4.0453 18 7 3.4072 0.6028 -5.0783 19 6 4.4079 1.2935 -5.7080 20 1 5.4357 0.9841 -5.5884 21 6 4.1013 2.3916 -6.4999 22 7 2.8783 2.8781 -6.5054 23 14 5.4262 3.1835 -7.5519 24 1 6.0290 4.3227 -6.8142 25 1 6.4779 2.1815 -7.8606 26 1 4.8250 3.6760 -8.8173 27 6 1.9627 0.7722 -5.3195 28 6 1.3297 -0.5762 -4.8863 29 1 1.4297 -1.3284 -5.6688 30 8 -0.0402 -0.4019 -4.5192 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 2.2491 -1.6319 1.1525 35 1 2.6554 0.8813 5.2028 36 1 3.5471 -1.0629 6.7131 37 1 2.9722 -2.7532 2.8693 38 1 1.1488 0.5386 -2.5436 39 1 4.1926 -1.2465 -4.4435 40 1 4.0918 0.0064 -3.1769 41 1 2.6651 3.6479 -7.0557 42 1 1.5704 1.5898 -4.7144 43 1 1.7737 0.9573 -6.3769 44 1 -0.6196 -0.1730 -5.2589 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219683910.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:44 Heat of formation + Delta-G solvation = -99.378138 kcal Electronic energy + Delta-G solvation = -29168.139225 eV Core-core repulsion = 24894.231558 eV Total energy + Delta-G solvation = -4273.907667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.48777 -41.56519 -40.40905 -39.28496 -36.63022 -36.12888 -35.43262 -34.04976 -33.59709 -32.05842 -30.50276 -29.95332 -28.81529 -26.53923 -25.89794 -24.33708 -22.43089 -22.34914 -21.88904 -21.25054 -21.18813 -19.78846 -18.97708 -18.34349 -18.01391 -17.60050 -17.23234 -17.10025 -16.72972 -16.59774 -16.11281 -15.90056 -15.76223 -15.59862 -15.02944 -14.77618 -14.53693 -14.52057 -14.18414 -13.88023 -13.85123 -13.64681 -13.43023 -13.28440 -13.17559 -12.97511 -12.79835 -12.68904 -12.63059 -12.08038 -11.91971 -11.75160 -11.30938 -11.02460 -10.87622 -10.82129 -10.72087 -10.35527 -10.11395 -9.75432 -8.91500 -7.92546 -5.27799 0.31381 1.12099 1.44662 1.45732 1.46486 1.55957 1.64677 2.05586 2.24666 2.32703 2.46151 3.07731 3.27589 3.48791 3.61777 3.65364 3.77053 3.80575 3.95429 3.98660 4.06370 4.12527 4.31663 4.51781 4.53032 4.61903 4.63923 4.73716 4.77503 4.86025 4.90002 4.99635 5.13477 5.19292 5.32770 5.34402 5.45432 5.47400 5.65647 5.97512 6.14334 6.38300 6.43944 6.87230 7.02687 7.05737 7.08796 7.69205 8.33631 9.18407 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016236 B = 0.002470 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.137894 B =11331.290607 C =12020.679234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.131 3.869 3 H 0.102 0.898 4 N -0.700 5.700 5 C 0.589 3.411 6 O -0.579 6.579 7 C -0.271 4.271 8 C -0.197 4.197 9 C -0.022 4.022 10 O -0.176 6.176 11 C 0.046 3.954 12 C 0.516 3.484 13 O -0.568 6.568 14 N -0.688 5.688 15 C 0.155 3.845 16 H 0.108 0.892 17 C 0.124 3.876 18 N -0.617 5.617 19 C -0.247 4.247 20 H 0.075 0.925 21 C -0.057 4.057 22 N -0.942 5.942 23 Si 0.975 3.025 24 H -0.290 1.290 25 H -0.270 1.270 26 H -0.289 1.289 27 C 0.156 3.844 28 C 0.089 3.911 29 H 0.090 0.910 30 O -0.558 6.558 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.416 0.584 35 H 0.156 0.844 36 H 0.249 0.751 37 H 0.243 0.757 38 H 0.411 0.589 39 H 0.043 0.957 40 H 0.013 0.987 41 H 0.250 0.750 42 H 0.010 0.990 43 H 0.044 0.956 44 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.218 -12.118 18.476 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 H 0.120 0.880 4 N -0.353 5.353 5 C 0.379 3.621 6 O -0.460 6.460 7 C -0.276 4.276 8 C -0.216 4.216 9 C -0.087 4.087 10 O -0.070 6.070 11 C -0.025 4.025 12 C 0.302 3.698 13 O -0.447 6.447 14 N -0.338 5.338 15 C 0.049 3.951 16 H 0.126 0.874 17 C -0.002 4.002 18 N -0.345 5.345 19 C -0.376 4.376 20 H 0.093 0.907 21 C -0.251 4.251 22 N -0.590 5.590 23 Si 0.803 3.197 24 H -0.217 1.217 25 H -0.195 1.195 26 H -0.215 1.215 27 C 0.031 3.969 28 C 0.028 3.972 29 H 0.108 0.892 30 O -0.366 6.366 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.254 0.746 35 H 0.174 0.826 36 H 0.265 0.735 37 H 0.259 0.741 38 H 0.248 0.752 39 H 0.061 0.939 40 H 0.031 0.969 41 H 0.059 0.941 42 H 0.028 0.972 43 H 0.063 0.937 44 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -5.589 -12.247 19.130 23.392 hybrid contribution 0.422 1.442 -1.525 2.141 sum -5.167 -10.805 17.605 21.293 Atomic orbital electron populations 1.22063 0.90624 1.03921 1.04072 1.20707 0.97234 0.97205 0.82644 0.88024 1.45499 1.67148 1.14859 1.07815 1.17594 0.76306 0.85640 0.82537 1.90765 1.52439 1.17168 1.85608 1.21482 1.14601 0.95995 0.95475 1.22959 1.05715 1.01771 0.91162 1.24651 1.03144 0.82058 0.98846 1.83851 1.65909 1.37228 1.20011 1.25027 0.95365 0.96171 0.85918 1.20680 0.79670 0.84319 0.85091 1.90646 1.39335 1.27786 1.86966 1.45582 1.52110 1.31832 1.04294 1.21859 0.92042 0.97357 0.83834 0.87419 1.21856 0.95549 0.91783 0.91016 1.44563 1.02700 1.43845 1.43407 1.19337 0.88352 1.07255 1.22634 0.90681 1.25592 0.99040 0.97929 1.02510 1.70092 1.19709 1.25708 1.43522 0.85122 0.78418 0.78177 0.77938 1.21742 1.19491 1.21544 1.21909 0.83101 0.92903 0.99036 1.23303 0.81797 0.97180 0.94917 0.89230 1.86313 1.17130 1.93031 1.40076 0.89575 0.90631 0.91227 0.74613 0.82633 0.73465 0.74142 0.75230 0.93929 0.96913 0.94076 0.97207 0.93734 0.75146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.38 71.98 0.68 -2.42 16 2 C 0.13 3.36 2.98 44.25 0.13 3.50 16 3 H 0.10 2.97 7.58 -2.39 -0.02 2.95 16 4 N -0.70 -16.64 4.94 -449.42 -2.22 -18.86 16 5 C 0.59 15.97 7.78 86.65 0.67 16.64 16 6 O -0.58 -20.12 16.65 -4.05 -0.07 -20.19 16 7 C -0.27 -5.82 6.31 -18.99 -0.12 -5.94 16 8 C -0.20 -3.69 11.01 23.65 0.26 -3.43 16 9 C -0.02 -0.26 12.03 66.89 0.80 0.54 16 10 O -0.18 -2.49 10.52 4.45 0.05 -2.44 16 11 C 0.05 0.67 11.61 67.40 0.78 1.46 16 12 C 0.52 15.31 7.22 87.66 0.63 15.94 16 13 O -0.57 -18.95 15.56 -3.07 -0.05 -19.00 16 14 N -0.69 -21.13 4.67 -436.90 -2.04 -23.17 16 15 C 0.15 5.17 3.14 46.18 0.14 5.32 16 16 H 0.11 3.36 7.69 -2.38 -0.02 3.34 16 17 C 0.12 5.16 6.98 86.73 0.61 5.77 16 18 N -0.62 -30.53 3.39 -691.52 -2.35 -32.88 16 19 C -0.25 -13.61 10.24 84.03 0.86 -12.75 16 20 H 0.08 4.06 7.84 -2.91 -0.02 4.03 16 21 C -0.06 -3.13 5.40 84.86 0.46 -2.68 16 22 N -0.94 -54.11 10.68 21.65 0.23 -53.88 16 23 Si 0.98 44.86 29.56 68.60 2.03 46.89 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 27 C 0.16 6.93 5.13 86.93 0.45 7.38 16 28 C 0.09 2.87 4.23 32.06 0.14 3.01 16 29 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 30 O -0.56 -14.76 12.63 -148.98 -1.88 -16.65 16 31 H 0.09 1.66 7.56 -2.39 -0.02 1.64 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.42 8.25 6.76 -92.70 -0.63 7.62 16 35 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 36 H 0.25 0.70 8.06 -2.91 -0.02 0.67 16 37 H 0.24 1.79 7.47 -2.91 -0.02 1.77 16 38 H 0.41 12.30 7.61 -92.71 -0.71 11.59 16 39 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 40 H 0.01 0.58 8.05 -2.38 -0.02 0.56 16 41 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 42 H 0.01 0.49 8.07 -2.38 -0.02 0.47 16 43 H 0.04 2.21 6.95 -2.39 -0.02 2.20 16 44 H 0.40 7.58 9.12 -74.05 -0.68 6.90 16 Total: -1.00 -76.35 375.09 -0.75 -77.10 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: -0.94 Total: 30.74 kcal Atomic # 6 Polarization: 25.85 SS G_CDS: 6.49 Total: 32.34 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -6.38 Total: -128.78 kcal Atomic # 8 Polarization: -56.33 SS G_CDS: -1.95 Total: -58.28 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -76.35 -0.75 -77.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219683910.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.281 kcal (2) G-P(sol) polarization free energy of solvation -76.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds