Wall clock time and date at job start Tue Mar 31 2020 21:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 N 1.46499 * 109.47145 * 240.00647 * 2 1 3 5 5 C 1.34777 * 120.00195 * 84.99285 * 4 2 1 6 6 O 1.21613 * 119.99966 * 0.02562 * 5 4 2 7 7 C 1.47380 * 119.99852 * 180.27819 * 5 4 2 8 8 C 1.47024 * 127.19034 * 179.72765 * 7 5 4 9 9 C 1.34177 * 105.95498 * 179.97438 * 8 7 5 10 10 O 1.34218 * 109.12322 * 0.02562 * 9 8 7 11 11 C 1.33657 * 110.90829 * 359.72524 * 10 9 8 12 12 C 1.50700 * 109.47661 * 120.00442 * 2 1 3 13 13 O 1.21273 * 120.00138 * 119.99940 * 12 2 1 14 14 N 1.34773 * 119.99661 * 300.00308 * 12 2 1 15 15 C 1.46500 * 120.00215 * 180.02562 * 14 12 2 16 16 H 1.09005 * 110.64108 * 36.68270 * 15 14 12 17 17 C 1.54323 * 110.71972 * 273.54304 * 15 14 12 18 18 N 1.47021 * 107.27321 * 219.44136 * 17 15 14 19 19 C 1.36937 * 125.64516 * 178.98027 * 18 17 15 20 20 H 1.07996 * 120.00273 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99575 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00272 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00075 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47075 * 59.99473 * 23 21 19 25 25 H 1.48506 * 109.47316 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47055 * 299.99760 * 23 21 19 27 27 C 1.47418 * 108.70157 * 358.93896 * 18 17 15 28 28 C 1.54910 * 104.83547 * 24.13100 * 27 18 17 29 29 H 1.08998 * 111.00909 * 204.91805 * 28 27 18 30 30 O 1.42900 * 111.00572 * 81.06009 * 28 27 18 31 31 H 1.09007 * 109.46732 * 299.99449 * 1 2 3 32 32 H 1.08995 * 109.47315 * 59.99836 * 1 2 3 33 33 H 1.08999 * 109.47045 * 179.97438 * 1 2 3 34 34 H 0.97000 * 120.00069 * 265.00013 * 4 2 1 35 35 H 1.07998 * 127.02504 * 0.02562 * 8 7 5 36 36 H 1.07997 * 125.44312 * 180.02562 * 9 8 7 37 37 H 1.08002 * 125.80220 * 180.28975 * 11 10 9 38 38 H 0.97001 * 120.00091 * 359.97438 * 14 12 2 39 39 H 1.08997 * 109.88195 * 338.86381 * 17 15 14 40 40 H 1.09001 * 109.88343 * 100.02156 * 17 15 14 41 41 H 0.96993 * 120.00185 * 179.97438 * 22 21 19 42 42 H 1.09001 * 110.36963 * 142.96983 * 27 18 17 43 43 H 1.09003 * 110.37072 * 265.18198 * 27 18 17 44 44 H 0.96699 * 113.99624 * 67.80962 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8580 1.1620 -2.4116 7 6 2.6324 -0.7142 -3.5621 8 6 2.8262 -0.1412 -4.9021 9 6 3.2797 -1.1438 -5.6699 10 8 3.3765 -2.2574 -4.9269 11 6 3.0011 -2.0235 -3.6657 12 6 2.0324 -0.7105 1.2304 13 8 2.7297 -1.6965 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.1957 -0.9404 3.6506 16 1 3.2071 -1.3146 3.4919 17 6 1.2441 -2.0894 4.0452 18 7 1.1498 -2.0938 5.5123 19 6 0.3869 -2.9503 6.2604 20 1 -0.2141 -3.7039 5.7733 21 6 0.3852 -2.8492 7.6448 22 7 1.1173 -1.9305 8.2385 23 14 -0.6560 -4.0170 8.6654 24 1 -0.2276 -5.4155 8.4082 25 1 -0.4828 -3.7038 10.1067 26 1 -2.0849 -3.8606 8.2926 27 6 2.0132 -1.0241 6.0447 28 6 2.1404 -0.0036 4.8863 29 1 3.0577 0.5781 4.9769 30 8 0.9972 0.8520 4.8296 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2490 -1.6316 -1.1528 35 1 2.6420 0.8786 -5.2062 36 1 3.5274 -1.0671 -6.7183 37 1 2.9894 -2.7484 -2.8652 38 1 1.1494 0.5387 2.5435 39 1 0.2588 -1.9204 3.6108 40 1 1.6468 -3.0405 3.6967 41 1 1.1158 -1.8596 9.2059 42 1 1.5473 -0.5570 6.9124 43 1 2.9922 -1.4235 6.3098 44 1 0.9202 1.4557 5.5810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219683916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:49 Heat of formation + Delta-G solvation = -67.479201 kcal Electronic energy + Delta-G solvation = -28955.304950 eV Core-core repulsion = 24682.780525 eV Total energy + Delta-G solvation = -4272.524425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.87375 -40.42611 -39.22699 -37.91978 -35.12812 -34.76548 -34.17206 -33.28034 -31.92766 -31.08595 -29.68070 -28.49808 -27.07044 -25.19208 -24.50726 -23.25920 -21.81872 -20.85018 -20.49502 -20.31644 -19.78278 -18.96521 -17.48407 -17.03377 -16.91559 -16.49698 -16.32826 -15.92971 -15.39471 -15.23005 -15.00844 -14.73580 -14.63864 -14.14930 -13.89904 -13.67447 -13.25190 -13.19380 -13.00270 -12.80156 -12.72596 -12.53074 -12.46801 -11.87807 -11.74483 -11.38793 -11.12177 -10.88317 -10.66845 -10.42643 -10.30940 -10.16757 -10.11624 -9.87700 -9.85478 -9.40724 -9.27073 -9.15307 -8.83282 -8.71763 -6.89181 -5.72827 -3.12911 1.01166 1.73340 2.52851 2.58983 2.70247 3.09780 3.36053 3.38441 3.42141 3.43741 4.24342 4.32403 4.40662 4.49379 4.67327 4.78224 4.88315 4.96827 5.15416 5.26962 5.30677 5.31713 5.43856 5.46062 5.53932 5.62002 5.66993 5.86371 5.91850 5.95245 5.99420 6.11073 6.21603 6.43256 6.58077 6.63822 6.85769 7.20980 7.25316 7.51485 7.61538 7.70180 7.96342 8.05685 8.26236 8.27560 9.14494 9.75511 10.38405 11.32255 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.023794 B = 0.002174 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.492480 B =12878.583711 C =13428.613695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 H 0.115 0.885 4 N -0.708 5.708 5 C 0.592 3.408 6 O -0.537 6.537 7 C -0.236 4.236 8 C -0.164 4.164 9 C -0.042 4.042 10 O -0.174 6.174 11 C 0.027 3.973 12 C 0.508 3.492 13 O -0.543 6.543 14 N -0.699 5.699 15 C 0.142 3.858 16 H 0.100 0.900 17 C 0.133 3.867 18 N -0.596 5.596 19 C -0.218 4.218 20 H 0.078 0.922 21 C -0.012 4.012 22 N -0.927 5.927 23 Si 0.917 3.083 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.127 3.873 28 C 0.068 3.932 29 H 0.059 0.941 30 O -0.561 6.561 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.408 0.592 35 H 0.160 0.840 36 H 0.209 0.791 37 H 0.214 0.786 38 H 0.410 0.590 39 H 0.030 0.970 40 H 0.028 0.972 41 H 0.253 0.747 42 H 0.116 0.884 43 H 0.023 0.977 44 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.505 5.457 -22.143 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 H 0.133 0.867 4 N -0.362 5.362 5 C 0.379 3.621 6 O -0.415 6.415 7 C -0.241 4.241 8 C -0.184 4.184 9 C -0.108 4.108 10 O -0.069 6.069 11 C -0.044 4.044 12 C 0.293 3.707 13 O -0.421 6.421 14 N -0.350 5.350 15 C 0.037 3.963 16 H 0.118 0.882 17 C 0.006 3.994 18 N -0.323 5.323 19 C -0.346 4.346 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.576 5.576 23 Si 0.748 3.252 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.001 3.999 28 C 0.007 3.993 29 H 0.077 0.923 30 O -0.367 6.367 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.245 0.755 35 H 0.178 0.822 36 H 0.226 0.774 37 H 0.230 0.770 38 H 0.247 0.753 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.064 0.936 42 H 0.133 0.867 43 H 0.041 0.959 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 3.744 4.951 -22.676 23.510 hybrid contribution -0.554 -0.267 1.262 1.404 sum 3.190 4.685 -21.414 22.151 Atomic orbital electron populations 1.22144 0.92471 1.03461 1.03794 1.20765 0.95920 0.98045 0.83331 0.86709 1.45581 1.67479 1.14689 1.08404 1.17219 0.77017 0.86048 0.81780 1.90787 1.50416 1.15351 1.84969 1.21474 1.12205 0.94668 0.95720 1.22783 1.03692 1.00943 0.90967 1.23971 1.05641 0.83379 0.97808 1.83814 1.66636 1.36760 1.19663 1.24579 0.97662 0.96802 0.85326 1.20496 0.80494 0.84801 0.84949 1.90686 1.38451 1.26350 1.86594 1.45770 1.52710 1.31908 1.04608 1.22199 0.98812 0.93177 0.82100 0.88171 1.21577 0.96186 0.94891 0.86789 1.44274 1.51888 1.37168 0.98941 1.19041 1.18501 1.08798 0.88238 0.90463 1.24764 1.00231 0.99419 0.96302 1.69701 1.43673 1.35646 1.08605 0.86106 0.79817 0.80133 0.79177 1.21191 1.21560 1.21143 1.22607 0.94511 0.87932 0.94859 1.23571 0.87429 0.91614 0.96680 0.92277 1.86227 1.47393 1.53785 1.49315 0.90428 0.90836 0.91551 0.75525 0.82242 0.77433 0.76991 0.75339 0.95239 0.95425 0.93636 0.86660 0.95942 0.77178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.38 37.16 0.35 -1.31 16 2 C 0.13 1.48 2.98 -69.08 -0.21 1.28 16 3 H 0.12 1.33 7.58 -51.93 -0.39 0.93 16 4 N -0.71 -7.88 4.94 -56.03 -0.28 -8.16 16 5 C 0.59 7.24 7.78 -12.54 -0.10 7.14 16 6 O -0.54 -8.17 16.65 5.27 0.09 -8.09 16 7 C -0.24 -2.40 6.31 -103.27 -0.65 -3.05 16 8 C -0.16 -1.45 11.01 -37.45 -0.41 -1.86 16 9 C -0.04 -0.28 12.03 29.30 0.35 0.07 16 10 O -0.17 -1.38 10.52 7.63 0.08 -1.30 16 11 C 0.03 0.21 11.61 30.07 0.35 0.56 16 12 C 0.51 7.18 7.22 -10.99 -0.08 7.10 16 13 O -0.54 -9.16 15.56 5.56 0.09 -9.07 16 14 N -0.70 -10.10 4.98 -52.03 -0.26 -10.35 16 15 C 0.14 2.50 3.12 -66.09 -0.21 2.30 16 16 H 0.10 1.80 7.69 -51.93 -0.40 1.40 16 17 C 0.13 2.84 6.99 -3.06 -0.02 2.82 16 18 N -0.60 -15.00 3.39 -170.08 -0.58 -15.58 16 19 C -0.22 -6.01 10.27 -15.06 -0.15 -6.16 16 20 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 22 N -0.93 -26.10 10.09 55.49 0.56 -25.54 16 23 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C 0.13 2.88 5.62 -2.53 -0.01 2.87 16 28 C 0.07 1.18 4.28 -24.58 -0.11 1.07 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 O -0.56 -9.05 12.23 -35.23 -0.43 -9.48 16 31 H 0.08 0.74 7.56 -51.93 -0.39 0.35 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.41 4.08 6.76 -40.82 -0.28 3.81 16 35 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.21 0.55 8.06 -52.49 -0.42 0.12 16 37 H 0.21 1.03 7.47 -52.49 -0.39 0.63 16 38 H 0.41 5.34 6.99 -40.82 -0.29 5.06 16 39 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.12 2.91 5.87 -51.93 -0.30 2.60 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.38 4.92 9.12 45.56 0.42 5.34 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -34.82 373.38 -6.07 -40.89 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -4.95 Total: 11.87 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: -0.99 Total: 12.38 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.55 Total: -59.63 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.18 Total: -27.94 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.82 -6.07 -40.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219683916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.590 kcal (2) G-P(sol) polarization free energy of solvation -34.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds