Wall clock time and date at job start Tue Mar 31 2020 21:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 N 1.46499 * 109.47145 * 240.00647 * 2 1 3 5 5 C 1.34777 * 120.00195 * 84.99285 * 4 2 1 6 6 O 1.21613 * 119.99966 * 0.02562 * 5 4 2 7 7 C 1.47380 * 119.99852 * 180.27819 * 5 4 2 8 8 C 1.47024 * 127.19034 * 179.72765 * 7 5 4 9 9 C 1.34177 * 105.95498 * 179.97438 * 8 7 5 10 10 O 1.34218 * 109.12322 * 0.02562 * 9 8 7 11 11 C 1.33657 * 110.90829 * 359.72524 * 10 9 8 12 12 C 1.50700 * 109.47661 * 120.00442 * 2 1 3 13 13 O 1.21273 * 120.00138 * 119.99940 * 12 2 1 14 14 N 1.34773 * 119.99661 * 300.00308 * 12 2 1 15 15 C 1.46500 * 120.00215 * 180.02562 * 14 12 2 16 16 H 1.09005 * 110.64108 * 36.68270 * 15 14 12 17 17 C 1.54323 * 110.71972 * 273.54304 * 15 14 12 18 18 N 1.47021 * 107.27321 * 219.44136 * 17 15 14 19 19 C 1.36937 * 125.64516 * 178.98027 * 18 17 15 20 20 H 1.07996 * 120.00273 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99575 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00272 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00075 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47075 * 59.99473 * 23 21 19 25 25 H 1.48506 * 109.47316 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47055 * 299.99760 * 23 21 19 27 27 C 1.47418 * 108.70157 * 358.93896 * 18 17 15 28 28 C 1.54910 * 104.83547 * 24.13100 * 27 18 17 29 29 H 1.08998 * 111.00909 * 204.91805 * 28 27 18 30 30 O 1.42900 * 111.00572 * 81.06009 * 28 27 18 31 31 H 1.09007 * 109.46732 * 299.99449 * 1 2 3 32 32 H 1.08995 * 109.47315 * 59.99836 * 1 2 3 33 33 H 1.08999 * 109.47045 * 179.97438 * 1 2 3 34 34 H 0.97000 * 120.00069 * 265.00013 * 4 2 1 35 35 H 1.07998 * 127.02504 * 0.02562 * 8 7 5 36 36 H 1.07997 * 125.44312 * 180.02562 * 9 8 7 37 37 H 1.08002 * 125.80220 * 180.28975 * 11 10 9 38 38 H 0.97001 * 120.00091 * 359.97438 * 14 12 2 39 39 H 1.08997 * 109.88195 * 338.86381 * 17 15 14 40 40 H 1.09001 * 109.88343 * 100.02156 * 17 15 14 41 41 H 0.96993 * 120.00185 * 179.97438 * 22 21 19 42 42 H 1.09001 * 110.36963 * 142.96983 * 27 18 17 43 43 H 1.09003 * 110.37072 * 265.18198 * 27 18 17 44 44 H 0.96699 * 113.99624 * 67.80962 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3572 6 8 1.8580 1.1620 -2.4116 7 6 2.6324 -0.7142 -3.5621 8 6 2.8262 -0.1412 -4.9021 9 6 3.2797 -1.1438 -5.6699 10 8 3.3765 -2.2574 -4.9269 11 6 3.0011 -2.0235 -3.6657 12 6 2.0324 -0.7105 1.2304 13 8 2.7297 -1.6965 1.1190 14 7 1.7068 -0.2501 2.4545 15 6 2.1957 -0.9404 3.6506 16 1 3.2071 -1.3146 3.4919 17 6 1.2441 -2.0894 4.0452 18 7 1.1498 -2.0938 5.5123 19 6 0.3869 -2.9503 6.2604 20 1 -0.2141 -3.7039 5.7733 21 6 0.3852 -2.8492 7.6448 22 7 1.1173 -1.9305 8.2385 23 14 -0.6560 -4.0170 8.6654 24 1 -0.2276 -5.4155 8.4082 25 1 -0.4828 -3.7038 10.1067 26 1 -2.0849 -3.8606 8.2926 27 6 2.0132 -1.0241 6.0447 28 6 2.1404 -0.0036 4.8863 29 1 3.0577 0.5781 4.9769 30 8 0.9972 0.8520 4.8296 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2490 -1.6316 -1.1528 35 1 2.6420 0.8786 -5.2062 36 1 3.5274 -1.0671 -6.7183 37 1 2.9894 -2.7484 -2.8652 38 1 1.1494 0.5387 2.5435 39 1 0.2588 -1.9204 3.6108 40 1 1.6468 -3.0405 3.6967 41 1 1.1158 -1.8596 9.2059 42 1 1.5473 -0.5570 6.9124 43 1 2.9922 -1.4235 6.3098 44 1 0.9202 1.4557 5.5810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219683916.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:48 Heat of formation + Delta-G solvation = -96.168265 kcal Electronic energy + Delta-G solvation = -28956.549001 eV Core-core repulsion = 24682.780525 eV Total energy + Delta-G solvation = -4273.768476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.48413 -41.55226 -40.37598 -39.34682 -36.36309 -36.12717 -35.56657 -34.03565 -33.60926 -32.08007 -30.52306 -30.06568 -28.69793 -26.58490 -25.85619 -24.25021 -22.47078 -22.38371 -21.81754 -21.20806 -21.16554 -19.77945 -19.14141 -18.34061 -17.99848 -17.53542 -17.11421 -16.95325 -16.84869 -16.42816 -16.29571 -15.92525 -15.81714 -15.56995 -15.10001 -14.68207 -14.62623 -14.52874 -14.28952 -13.84429 -13.80092 -13.52482 -13.39661 -13.27746 -13.20363 -12.91902 -12.73803 -12.70138 -12.25334 -12.15555 -11.88752 -11.85268 -11.29192 -11.06189 -10.88032 -10.84987 -10.70982 -10.33486 -10.15974 -9.75180 -8.89538 -7.80205 -5.23295 0.31628 1.12927 1.41712 1.47172 1.49368 1.55598 1.64220 2.05663 2.23106 2.32078 2.49626 3.17313 3.30795 3.46090 3.60834 3.72610 3.77587 3.85584 3.93425 3.97226 4.05083 4.12791 4.31106 4.49178 4.52862 4.62316 4.72525 4.73613 4.77150 4.87341 4.94335 4.99989 5.14078 5.20225 5.33678 5.34268 5.42603 5.47807 5.72619 5.98289 6.26505 6.37869 6.45777 6.89672 7.05451 7.09142 7.10335 7.74197 8.36347 9.21520 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.023794 B = 0.002174 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.492480 B =12878.583711 C =13428.613695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.135 3.865 3 H 0.119 0.881 4 N -0.703 5.703 5 C 0.592 3.408 6 O -0.574 6.574 7 C -0.270 4.270 8 C -0.194 4.194 9 C -0.024 4.024 10 O -0.178 6.178 11 C 0.042 3.958 12 C 0.513 3.487 13 O -0.569 6.569 14 N -0.689 5.689 15 C 0.155 3.845 16 H 0.099 0.901 17 C 0.133 3.867 18 N -0.617 5.617 19 C -0.240 4.240 20 H 0.074 0.926 21 C -0.061 4.061 22 N -0.945 5.945 23 Si 0.980 3.020 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.278 1.278 27 C 0.125 3.875 28 C 0.090 3.910 29 H 0.094 0.906 30 O -0.562 6.562 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.414 0.586 35 H 0.159 0.841 36 H 0.249 0.751 37 H 0.239 0.761 38 H 0.420 0.580 39 H 0.025 0.975 40 H 0.013 0.987 41 H 0.249 0.751 42 H 0.090 0.910 43 H 0.001 0.999 44 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.503 5.515 -23.566 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.027 3.973 3 H 0.137 0.863 4 N -0.356 5.356 5 C 0.382 3.618 6 O -0.455 6.455 7 C -0.274 4.274 8 C -0.213 4.213 9 C -0.089 4.089 10 O -0.072 6.072 11 C -0.028 4.028 12 C 0.299 3.701 13 O -0.448 6.448 14 N -0.341 5.341 15 C 0.049 3.951 16 H 0.117 0.883 17 C 0.006 3.994 18 N -0.343 5.343 19 C -0.369 4.369 20 H 0.092 0.908 21 C -0.254 4.254 22 N -0.595 5.595 23 Si 0.808 3.192 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.204 1.204 27 C 0.000 4.000 28 C 0.029 3.971 29 H 0.112 0.888 30 O -0.371 6.371 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.252 0.748 35 H 0.177 0.823 36 H 0.264 0.736 37 H 0.255 0.745 38 H 0.258 0.742 39 H 0.043 0.957 40 H 0.031 0.969 41 H 0.059 0.941 42 H 0.108 0.892 43 H 0.018 0.982 44 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.734 5.023 -24.120 24.919 hybrid contribution -0.541 -0.327 1.660 1.776 sum 3.193 4.696 -22.460 23.167 Atomic orbital electron populations 1.22110 0.91291 1.03530 1.04340 1.20718 0.96656 0.97758 0.82209 0.86302 1.45561 1.67134 1.14894 1.08053 1.17508 0.76272 0.85661 0.82354 1.90757 1.52295 1.16895 1.85567 1.21505 1.14408 0.95935 0.95598 1.22960 1.05529 1.01774 0.91043 1.24668 1.03275 0.82070 0.98898 1.83854 1.66360 1.37266 1.19728 1.25010 0.95694 0.96335 0.85804 1.20869 0.79669 0.84294 0.85312 1.90679 1.39587 1.27606 1.86960 1.45600 1.52826 1.31905 1.03812 1.21861 0.97704 0.92098 0.83470 0.88280 1.21635 0.96798 0.95969 0.84974 1.44544 1.51785 1.37481 1.00482 1.19341 1.19029 1.09489 0.89041 0.90803 1.25547 1.01538 1.01081 0.97242 1.69932 1.44523 1.36634 1.08386 0.85140 0.78480 0.78259 0.77349 1.20793 1.21599 1.20424 1.22506 0.92601 0.88549 0.96347 1.23271 0.89250 0.90797 0.93764 0.88799 1.86196 1.46986 1.53690 1.50188 0.89350 0.90821 0.91692 0.74833 0.82345 0.73553 0.74503 0.74179 0.95703 0.96886 0.94102 0.89201 0.98155 0.75323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.38 71.98 0.68 -2.31 16 2 C 0.13 2.97 2.98 44.24 0.13 3.10 16 3 H 0.12 2.59 7.58 -2.39 -0.02 2.58 16 4 N -0.70 -15.03 4.94 -449.42 -2.22 -17.25 16 5 C 0.59 14.27 7.78 86.65 0.67 14.95 16 6 O -0.57 -17.54 16.65 -4.07 -0.07 -17.60 16 7 C -0.27 -5.28 6.31 -18.99 -0.12 -5.40 16 8 C -0.19 -3.24 11.01 23.65 0.26 -2.98 16 9 C -0.02 -0.26 12.03 66.89 0.80 0.54 16 10 O -0.18 -2.41 10.52 4.39 0.05 -2.37 16 11 C 0.04 0.59 11.61 67.39 0.78 1.37 16 12 C 0.51 13.80 7.22 87.66 0.63 14.43 16 13 O -0.57 -18.63 15.56 -3.01 -0.05 -18.67 16 14 N -0.69 -18.76 4.98 -436.92 -2.17 -20.93 16 15 C 0.15 5.27 3.12 46.18 0.14 5.42 16 16 H 0.10 3.46 7.69 -2.38 -0.02 3.44 16 17 C 0.13 5.71 6.99 86.73 0.61 6.31 16 18 N -0.62 -31.43 3.39 -692.01 -2.35 -33.78 16 19 C -0.24 -13.46 10.27 84.03 0.86 -12.59 16 20 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 22 N -0.95 -53.98 10.09 21.65 0.22 -53.76 16 23 Si 0.98 45.07 29.55 68.60 2.03 47.10 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 C 0.13 5.76 5.62 86.86 0.49 6.24 16 28 C 0.09 2.98 4.28 31.99 0.14 3.12 16 29 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 30 O -0.56 -16.94 12.23 -148.98 -1.82 -18.76 16 31 H 0.09 1.51 7.56 -2.38 -0.02 1.49 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.41 7.82 6.76 -92.71 -0.63 7.19 16 35 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.25 0.43 8.06 -2.91 -0.02 0.40 16 37 H 0.24 1.78 7.47 -2.91 -0.02 1.76 16 38 H 0.42 9.96 6.99 -92.71 -0.65 9.31 16 39 H 0.02 1.09 8.03 -2.39 -0.02 1.07 16 40 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 42 H 0.09 4.61 5.87 -2.39 -0.01 4.59 16 43 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 44 H 0.40 9.38 9.12 -74.06 -0.68 8.71 16 Total: -1.00 -76.29 373.38 -0.72 -77.01 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: -0.88 Total: 29.75 kcal Atomic # 6 Polarization: 22.71 SS G_CDS: 6.55 Total: 29.26 kcal Atomic # 7 Polarization: -119.19 SS G_CDS: -6.53 Total: -125.72 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -1.89 Total: -57.40 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -76.29 -0.72 -77.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219683916.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.156 kcal (2) G-P(sol) polarization free energy of solvation -76.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds