Wall clock time and date at job start Tue Mar 31 2020 21:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09012 * 109.47027 * 2 1 4 4 N 1.46496 * 109.47608 * 239.99773 * 2 1 3 5 5 C 1.34780 * 120.00177 * 84.99720 * 4 2 1 6 6 O 1.21695 * 119.99447 * 0.02562 * 5 4 2 7 7 C 1.46652 * 120.00168 * 180.02562 * 5 4 2 8 8 C 1.36545 * 125.99141 * 180.02562 * 7 5 4 9 9 C 1.40358 * 106.70799 * 179.97438 * 8 7 5 10 10 C 1.35124 * 107.12228 * 359.97438 * 9 8 7 11 11 O 1.33939 * 108.76253 * 359.75584 * 10 9 8 12 12 C 1.50706 * 109.47100 * 119.99495 * 2 1 3 13 13 O 1.21276 * 119.99675 * 119.99834 * 12 2 1 14 14 N 1.34773 * 119.99731 * 300.00204 * 12 2 1 15 15 C 1.46504 * 119.99495 * 179.97438 * 14 12 2 16 16 H 1.08998 * 110.91783 * 31.10020 * 15 14 12 17 17 C 1.54905 * 111.00304 * 267.19446 * 15 14 12 18 18 N 1.47432 * 104.83185 * 204.91698 * 17 15 14 19 19 C 1.36934 * 125.64817 * 204.16933 * 18 17 15 20 20 H 1.07992 * 120.00404 * 354.83672 * 19 18 17 21 21 C 1.38818 * 119.99636 * 174.83833 * 19 18 17 22 22 N 1.31614 * 120.00266 * 7.06152 * 21 19 18 23 23 Si 1.86805 * 119.99798 * 187.06024 * 21 19 18 24 24 H 1.48492 * 109.46875 * 94.98455 * 23 21 19 25 25 H 1.48497 * 109.47216 * 214.98887 * 23 21 19 26 26 H 1.48505 * 109.46807 * 334.98902 * 23 21 19 27 27 C 1.47027 * 108.70027 * 24.13115 * 18 17 15 28 28 C 1.54323 * 107.27404 * 358.94186 * 27 18 17 29 29 H 1.08992 * 110.72130 * 219.26702 * 28 27 18 30 30 O 1.42895 * 110.72128 * 96.16752 * 28 27 18 31 31 H 1.09000 * 109.46784 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47087 * 300.00356 * 1 2 3 33 33 H 1.08998 * 109.46894 * 60.00176 * 1 2 3 34 34 H 0.96999 * 119.99748 * 265.00862 * 4 2 1 35 35 H 1.07998 * 126.64037 * 359.95428 * 8 7 5 36 36 H 1.08005 * 126.44028 * 180.02562 * 9 8 7 37 37 H 1.07994 * 125.62325 * 180.02562 * 10 9 8 38 38 H 0.97003 * 120.00752 * 0.02562 * 14 12 2 39 39 H 1.09004 * 110.36727 * 86.08637 * 17 15 14 40 40 H 1.08999 * 110.37035 * 323.75793 * 17 15 14 41 41 H 0.97001 * 120.00208 * 179.97438 * 22 21 19 42 42 H 1.09002 * 109.87948 * 239.52055 * 27 18 17 43 43 H 1.09002 * 109.87697 * 118.35557 * 27 18 17 44 44 H 0.96701 * 113.99843 * 61.45132 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 8 1.8581 1.1625 -2.4117 7 6 2.6356 -0.7098 -3.5546 8 6 2.8127 -0.1510 -4.7878 9 6 3.2923 -1.1687 -5.6269 10 6 3.3864 -2.2899 -4.8787 11 8 2.9952 -2.0081 -3.6291 12 6 2.0324 -0.7103 1.2306 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2497 2.4546 15 6 2.1946 -0.9406 3.6508 16 1 3.1646 -1.4020 3.4653 17 6 1.1665 -1.9887 4.1448 18 7 1.4478 -2.1444 5.5836 19 6 1.1472 -3.2448 6.3411 20 1 0.5880 -4.0614 5.9091 21 6 1.5612 -3.3106 7.6645 22 7 2.1192 -2.2625 8.2323 23 14 1.3261 -4.8866 8.6394 24 1 2.5700 -5.6954 8.5802 25 1 1.0194 -4.5528 10.0535 26 1 0.2018 -5.6644 8.0593 27 6 2.1056 -0.9228 6.0702 28 6 2.2611 0.0258 4.8629 29 1 3.2216 0.5398 4.8975 30 8 1.1873 0.9675 4.8182 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6318 -1.1525 35 1 2.6206 0.8753 -5.0639 36 1 3.5405 -1.0734 -6.6738 37 1 3.7256 -3.2534 -5.2292 38 1 1.1487 0.5387 2.5436 39 1 1.3111 -2.9361 3.6254 40 1 0.1505 -1.6238 3.9942 41 1 2.4082 -2.3084 9.1572 42 1 3.0862 -1.1673 6.4784 43 1 1.4902 -0.4504 6.8359 44 1 1.1379 1.5449 5.5924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221022911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:28 Heat of formation + Delta-G solvation = -68.664914 kcal Electronic energy + Delta-G solvation = -28953.931753 eV Core-core repulsion = 24681.355912 eV Total energy + Delta-G solvation = -4272.575841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.00260 -40.44795 -39.29106 -37.99248 -35.27806 -34.86449 -34.16436 -33.41198 -32.00481 -31.25194 -29.71803 -28.45712 -27.12626 -25.17390 -24.44980 -23.10400 -22.09122 -20.81006 -20.57266 -20.40643 -19.97285 -19.11748 -17.50196 -17.08188 -16.94780 -16.66984 -16.39306 -16.04599 -15.39453 -15.11769 -14.88830 -14.60845 -14.41861 -14.07190 -13.76248 -13.54400 -13.33759 -13.24133 -13.05675 -12.91961 -12.77241 -12.57199 -12.52287 -12.25318 -11.82108 -11.35435 -11.00542 -10.89548 -10.64247 -10.57349 -10.50010 -10.41951 -10.16528 -9.90052 -9.86007 -9.49552 -9.36063 -9.02298 -8.79774 -8.67303 -6.92203 -5.80339 -3.12319 0.72772 2.00282 2.29665 2.58704 2.74306 2.88919 3.32926 3.38058 3.43503 3.44943 4.31165 4.39861 4.48923 4.54255 4.63722 4.74513 4.83529 4.93220 5.24431 5.26162 5.31715 5.38697 5.41062 5.47162 5.51903 5.57852 5.65809 5.82131 5.92420 5.94990 5.98144 6.03803 6.16397 6.46234 6.49289 6.58974 6.84607 7.18028 7.27473 7.39195 7.60323 7.70195 7.78540 8.01790 8.15053 8.26430 9.13146 9.73539 10.37934 11.32305 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.002239 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.829677 B =12500.935526 C =13393.945476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.117 0.883 4 N -0.700 5.700 5 C 0.607 3.393 6 O -0.522 6.522 7 C -0.078 4.078 8 C -0.119 4.119 9 C -0.228 4.228 10 C -0.003 4.003 11 O -0.161 6.161 12 C 0.507 3.493 13 O -0.539 6.539 14 N -0.699 5.699 15 C 0.138 3.862 16 H 0.106 0.894 17 C 0.132 3.868 18 N -0.600 5.600 19 C -0.226 4.226 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.924 5.924 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.153 3.847 28 C 0.068 3.932 29 H 0.062 0.938 30 O -0.569 6.569 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.416 0.584 35 H 0.161 0.839 36 H 0.157 0.843 37 H 0.211 0.789 38 H 0.410 0.590 39 H 0.044 0.956 40 H 0.026 0.974 41 H 0.253 0.747 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 6.360 -23.044 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 H 0.135 0.865 4 N -0.352 5.352 5 C 0.394 3.606 6 O -0.400 6.400 7 C -0.130 4.130 8 C -0.140 4.140 9 C -0.247 4.247 10 C -0.073 4.073 11 O -0.056 6.056 12 C 0.292 3.708 13 O -0.416 6.416 14 N -0.350 5.350 15 C 0.032 3.968 16 H 0.124 0.876 17 C 0.004 3.996 18 N -0.327 5.327 19 C -0.354 4.354 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.572 5.572 23 Si 0.744 3.256 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.027 3.973 28 C 0.008 3.992 29 H 0.080 0.920 30 O -0.376 6.376 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.254 0.746 35 H 0.179 0.821 36 H 0.175 0.825 37 H 0.228 0.772 38 H 0.246 0.754 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.984 5.925 -23.185 23.950 hybrid contribution -0.015 -0.605 1.016 1.183 sum 0.969 5.319 -22.169 22.819 Atomic orbital electron populations 1.22152 0.92299 1.03586 1.03873 1.20838 0.96059 0.98070 0.83302 0.86494 1.45652 1.66175 1.15232 1.08187 1.16486 0.77540 0.85610 0.80985 1.90885 1.50966 1.14117 1.84072 1.21991 1.11076 0.82805 0.97107 1.21982 0.99649 1.01250 0.91123 1.21875 1.08086 0.92833 1.01883 1.24472 1.00702 1.00975 0.81196 1.84114 1.63598 1.26536 1.31318 1.20450 0.80614 0.84866 0.84896 1.90719 1.38196 1.26212 1.86483 1.45684 1.52766 1.31897 1.04626 1.22416 0.99602 0.93079 0.81681 0.87587 1.21833 0.95291 0.95935 0.86497 1.44283 1.70282 1.15293 1.02884 1.19082 1.29320 0.94370 0.92654 0.90234 1.24819 1.00753 0.97897 0.96927 1.69919 1.46789 1.27769 1.12699 0.86070 0.77733 0.82588 0.79236 1.21528 1.21753 1.20575 1.21899 0.98693 0.85712 0.90982 1.23511 0.88811 0.89942 0.96952 0.92047 1.86213 1.53019 1.51022 1.47297 0.91437 0.90305 0.90763 0.74599 0.82146 0.82524 0.77249 0.75425 0.93725 0.95585 0.93667 0.92445 0.93030 0.77064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.38 37.16 0.35 -1.24 16 2 C 0.13 1.45 2.98 -69.08 -0.21 1.25 16 3 H 0.12 1.30 7.58 -51.92 -0.39 0.91 16 4 N -0.70 -8.30 4.95 -56.25 -0.28 -8.58 16 5 C 0.61 7.51 7.75 -12.86 -0.10 7.41 16 6 O -0.52 -7.49 16.53 5.19 0.09 -7.40 16 7 C -0.08 -0.85 7.13 -36.80 -0.26 -1.11 16 8 C -0.12 -1.11 10.62 -39.40 -0.42 -1.53 16 9 C -0.23 -1.60 10.87 -39.89 -0.43 -2.03 16 10 C 0.00 -0.02 12.08 29.62 0.36 0.34 16 11 O -0.16 -1.59 10.40 4.96 0.05 -1.54 16 12 C 0.51 7.29 7.22 -10.98 -0.08 7.21 16 13 O -0.54 -9.54 15.48 5.56 0.09 -9.45 16 14 N -0.70 -10.02 5.06 -51.72 -0.26 -10.28 16 15 C 0.14 2.45 3.31 -65.78 -0.22 2.24 16 16 H 0.11 2.03 7.54 -51.93 -0.39 1.64 16 17 C 0.13 2.79 6.92 -2.53 -0.02 2.77 16 18 N -0.60 -15.11 3.39 -170.06 -0.58 -15.69 16 19 C -0.23 -6.27 10.27 -15.06 -0.15 -6.42 16 20 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 21 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 22 N -0.92 -26.40 10.36 55.49 0.57 -25.82 16 23 Si 0.91 21.94 29.56 -169.99 -5.02 16.91 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 27 C 0.15 3.48 5.14 -3.06 -0.02 3.47 16 28 C 0.07 1.18 4.20 -24.89 -0.10 1.07 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 O -0.57 -8.61 12.15 -35.23 -0.43 -9.03 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.69 7.56 -51.93 -0.39 0.30 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.42 4.97 7.55 -40.82 -0.31 4.67 16 35 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.16 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.21 0.56 8.06 -52.49 -0.42 0.13 16 38 H 0.41 5.15 7.01 -40.82 -0.29 4.87 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.06 1.45 7.30 -51.93 -0.38 1.07 16 43 H 0.05 1.28 7.52 -51.93 -0.39 0.89 16 44 H 0.38 4.53 9.09 45.56 0.41 4.94 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -34.08 374.72 -6.58 -40.66 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -5.06 Total: 11.48 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: -1.40 Total: 13.10 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.54 Total: -60.37 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.20 Total: -27.43 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.08 -6.58 -40.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221022911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.008 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds