Wall clock time and date at job start Tue Mar 31 2020 21:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09012 * 109.47027 * 2 1 4 4 N 1.46496 * 109.47608 * 239.99773 * 2 1 3 5 5 C 1.34780 * 120.00177 * 84.99720 * 4 2 1 6 6 O 1.21695 * 119.99447 * 0.02562 * 5 4 2 7 7 C 1.46652 * 120.00168 * 180.02562 * 5 4 2 8 8 C 1.36545 * 125.99141 * 180.02562 * 7 5 4 9 9 C 1.40358 * 106.70799 * 179.97438 * 8 7 5 10 10 C 1.35124 * 107.12228 * 359.97438 * 9 8 7 11 11 O 1.33939 * 108.76253 * 359.75584 * 10 9 8 12 12 C 1.50706 * 109.47100 * 119.99495 * 2 1 3 13 13 O 1.21276 * 119.99675 * 119.99834 * 12 2 1 14 14 N 1.34773 * 119.99731 * 300.00204 * 12 2 1 15 15 C 1.46504 * 119.99495 * 179.97438 * 14 12 2 16 16 H 1.08998 * 110.91783 * 31.10020 * 15 14 12 17 17 C 1.54905 * 111.00304 * 267.19446 * 15 14 12 18 18 N 1.47432 * 104.83185 * 204.91698 * 17 15 14 19 19 C 1.36934 * 125.64817 * 204.16933 * 18 17 15 20 20 H 1.07992 * 120.00404 * 354.83672 * 19 18 17 21 21 C 1.38818 * 119.99636 * 174.83833 * 19 18 17 22 22 N 1.31614 * 120.00266 * 7.06152 * 21 19 18 23 23 Si 1.86805 * 119.99798 * 187.06024 * 21 19 18 24 24 H 1.48492 * 109.46875 * 94.98455 * 23 21 19 25 25 H 1.48497 * 109.47216 * 214.98887 * 23 21 19 26 26 H 1.48505 * 109.46807 * 334.98902 * 23 21 19 27 27 C 1.47027 * 108.70027 * 24.13115 * 18 17 15 28 28 C 1.54323 * 107.27404 * 358.94186 * 27 18 17 29 29 H 1.08992 * 110.72130 * 219.26702 * 28 27 18 30 30 O 1.42895 * 110.72128 * 96.16752 * 28 27 18 31 31 H 1.09000 * 109.46784 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47087 * 300.00356 * 1 2 3 33 33 H 1.08998 * 109.46894 * 60.00176 * 1 2 3 34 34 H 0.96999 * 119.99748 * 265.00862 * 4 2 1 35 35 H 1.07998 * 126.64037 * 359.95428 * 8 7 5 36 36 H 1.08005 * 126.44028 * 180.02562 * 9 8 7 37 37 H 1.07994 * 125.62325 * 180.02562 * 10 9 8 38 38 H 0.97003 * 120.00752 * 0.02562 * 14 12 2 39 39 H 1.09004 * 110.36727 * 86.08637 * 17 15 14 40 40 H 1.08999 * 110.37035 * 323.75793 * 17 15 14 41 41 H 0.97001 * 120.00208 * 179.97438 * 22 21 19 42 42 H 1.09002 * 109.87948 * 239.52055 * 27 18 17 43 43 H 1.09002 * 109.87697 * 118.35557 * 27 18 17 44 44 H 0.96701 * 113.99843 * 61.45132 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0185 -0.6906 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 8 1.8581 1.1625 -2.4117 7 6 2.6356 -0.7098 -3.5546 8 6 2.8127 -0.1510 -4.7878 9 6 3.2923 -1.1687 -5.6269 10 6 3.3864 -2.2899 -4.8787 11 8 2.9952 -2.0081 -3.6291 12 6 2.0324 -0.7103 1.2306 13 8 2.7296 -1.6964 1.1193 14 7 1.7067 -0.2497 2.4546 15 6 2.1946 -0.9406 3.6508 16 1 3.1646 -1.4020 3.4653 17 6 1.1665 -1.9887 4.1448 18 7 1.4478 -2.1444 5.5836 19 6 1.1472 -3.2448 6.3411 20 1 0.5880 -4.0614 5.9091 21 6 1.5612 -3.3106 7.6645 22 7 2.1192 -2.2625 8.2323 23 14 1.3261 -4.8866 8.6394 24 1 2.5700 -5.6954 8.5802 25 1 1.0194 -4.5528 10.0535 26 1 0.2018 -5.6644 8.0593 27 6 2.1056 -0.9228 6.0702 28 6 2.2611 0.0258 4.8629 29 1 3.2216 0.5398 4.8975 30 8 1.1873 0.9675 4.8182 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6318 -1.1525 35 1 2.6206 0.8753 -5.0639 36 1 3.5405 -1.0734 -6.6738 37 1 3.7256 -3.2534 -5.2292 38 1 1.1487 0.5387 2.5436 39 1 1.3111 -2.9361 3.6254 40 1 0.1505 -1.6238 3.9942 41 1 2.4082 -2.3084 9.1572 42 1 3.0862 -1.1673 6.4784 43 1 1.4902 -0.4504 6.8359 44 1 1.1379 1.5449 5.5924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221022911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:27 Heat of formation + Delta-G solvation = -96.831641 kcal Electronic energy + Delta-G solvation = -28955.153154 eV Core-core repulsion = 24681.355912 eV Total energy + Delta-G solvation = -4273.797242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.65241 -41.57428 -40.44292 -39.42622 -36.44836 -36.25759 -35.57394 -34.06632 -33.69885 -32.36155 -30.57839 -30.05466 -28.76101 -26.58551 -25.80612 -24.06149 -22.72825 -22.38685 -21.85111 -21.42422 -21.29803 -19.99874 -19.16903 -18.37192 -18.01368 -17.59714 -17.35226 -17.01761 -16.86527 -16.52199 -16.21240 -15.82237 -15.72490 -15.44533 -14.89111 -14.73790 -14.56949 -14.43827 -14.16438 -13.98262 -13.94396 -13.70376 -13.55158 -13.36414 -13.18985 -12.83373 -12.77462 -12.73147 -12.28171 -12.10376 -11.97254 -11.89123 -11.57593 -11.08311 -11.04481 -10.86755 -10.75505 -10.45817 -10.15299 -9.67741 -8.95200 -7.90766 -5.25010 -0.00620 1.39344 1.41018 1.45519 1.47193 1.50084 1.55788 1.88918 2.04591 2.26948 2.48288 3.14578 3.29348 3.43057 3.64686 3.71799 3.85084 3.91686 3.96006 3.96372 4.04559 4.11578 4.26144 4.48234 4.57549 4.63105 4.66106 4.72902 4.83257 4.90319 4.95056 4.99083 5.11049 5.14944 5.34241 5.39686 5.40861 5.47187 5.64340 5.81843 6.13770 6.28462 6.44495 6.84537 6.85817 7.05689 7.10151 7.70253 8.33837 9.19662 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.002239 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.829677 B =12500.935526 C =13393.945476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.133 3.867 3 H 0.127 0.873 4 N -0.700 5.700 5 C 0.608 3.392 6 O -0.550 6.550 7 C -0.115 4.115 8 C -0.118 4.118 9 C -0.233 4.233 10 C 0.008 3.992 11 O -0.176 6.176 12 C 0.511 3.489 13 O -0.572 6.572 14 N -0.686 5.686 15 C 0.151 3.849 16 H 0.094 0.906 17 C 0.132 3.868 18 N -0.622 5.622 19 C -0.245 4.245 20 H 0.078 0.922 21 C -0.060 4.060 22 N -0.946 5.946 23 Si 0.977 3.023 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.270 1.270 27 C 0.158 3.842 28 C 0.092 3.908 29 H 0.089 0.911 30 O -0.563 6.563 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.415 0.585 35 H 0.165 0.835 36 H 0.186 0.814 37 H 0.252 0.748 38 H 0.422 0.578 39 H 0.031 0.969 40 H 0.030 0.970 41 H 0.250 0.750 42 H 0.025 0.975 43 H 0.026 0.974 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.702 6.522 -24.937 25.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.025 3.975 3 H 0.144 0.856 4 N -0.352 5.352 5 C 0.396 3.604 6 O -0.430 6.430 7 C -0.166 4.166 8 C -0.139 4.139 9 C -0.251 4.251 10 C -0.061 4.061 11 O -0.072 6.072 12 C 0.297 3.703 13 O -0.452 6.452 14 N -0.338 5.338 15 C 0.044 3.956 16 H 0.112 0.888 17 C 0.006 3.994 18 N -0.349 5.349 19 C -0.374 4.374 20 H 0.095 0.905 21 C -0.254 4.254 22 N -0.595 5.595 23 Si 0.805 3.195 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.195 1.195 27 C 0.033 3.967 28 C 0.032 3.968 29 H 0.107 0.893 30 O -0.372 6.372 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.253 0.747 35 H 0.182 0.818 36 H 0.203 0.797 37 H 0.268 0.732 38 H 0.260 0.740 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 0.865 6.122 -25.098 25.849 hybrid contribution 0.014 -0.695 1.502 1.655 sum 0.879 5.428 -23.596 24.228 Atomic orbital electron populations 1.22135 0.90735 1.03642 1.04803 1.20841 0.97076 0.97817 0.81770 0.85582 1.45681 1.66171 1.15130 1.08248 1.16662 0.76982 0.85375 0.81361 1.90852 1.52408 1.15115 1.84616 1.21806 1.13953 0.83715 0.97143 1.22281 0.98573 1.02005 0.91048 1.22240 1.07779 0.92041 1.03084 1.25404 0.98303 1.02517 0.79886 1.84104 1.64063 1.26042 1.32980 1.20906 0.79666 0.84272 0.85426 1.90710 1.39674 1.27837 1.86946 1.45481 1.52804 1.31902 1.03627 1.21986 0.97900 0.92495 0.83174 0.88842 1.21890 0.96380 0.96532 0.84628 1.44560 1.70301 1.15533 1.04493 1.19393 1.29370 0.95328 0.93323 0.90452 1.25614 1.00994 1.00821 0.97922 1.70109 1.47525 1.29234 1.12605 0.85080 0.77758 0.79072 0.77546 1.21424 1.21781 1.19516 1.21748 0.96135 0.85984 0.92869 1.23136 0.90682 0.89305 0.93722 0.89303 1.86178 1.52193 1.50550 1.48298 0.91806 0.88765 0.90416 0.74740 0.81780 0.79696 0.73248 0.73968 0.95065 0.95254 0.94115 0.95648 0.95580 0.75017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.38 71.98 0.68 -2.16 16 2 C 0.13 2.94 2.98 44.25 0.13 3.07 16 3 H 0.13 2.62 7.58 -2.38 -0.02 2.60 16 4 N -0.70 -16.45 4.95 -450.08 -2.23 -18.67 16 5 C 0.61 15.00 7.75 86.44 0.67 15.67 16 6 O -0.55 -15.69 16.53 -4.33 -0.07 -15.76 16 7 C -0.11 -2.46 7.13 24.07 0.17 -2.29 16 8 C -0.12 -2.08 10.62 22.39 0.24 -1.84 16 9 C -0.23 -2.69 10.87 22.07 0.24 -2.45 16 10 C 0.01 0.09 12.08 67.10 0.81 0.90 16 11 O -0.18 -3.30 10.40 -5.16 -0.05 -3.35 16 12 C 0.51 14.24 7.22 87.66 0.63 14.87 16 13 O -0.57 -20.20 15.48 -3.02 -0.05 -20.25 16 14 N -0.69 -18.65 5.06 -435.95 -2.21 -20.86 16 15 C 0.15 5.28 3.31 46.38 0.15 5.43 16 16 H 0.09 3.57 7.54 -2.39 -0.02 3.55 16 17 C 0.13 5.63 6.92 86.85 0.60 6.23 16 18 N -0.62 -31.88 3.39 -691.96 -2.35 -34.22 16 19 C -0.25 -13.85 10.27 84.04 0.86 -12.99 16 20 H 0.08 4.26 7.84 -2.91 -0.02 4.24 16 21 C -0.06 -3.39 5.48 84.86 0.46 -2.92 16 22 N -0.95 -55.26 10.36 21.65 0.22 -55.03 16 23 Si 0.98 45.58 29.56 68.60 2.03 47.61 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 27 C 0.16 7.33 5.14 86.73 0.45 7.78 16 28 C 0.09 3.07 4.20 31.79 0.13 3.21 16 29 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 30 O -0.56 -15.74 12.15 -148.98 -1.81 -17.55 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.43 7.56 -2.39 -0.02 1.41 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.42 9.98 7.55 -92.71 -0.70 9.28 16 35 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 37 H 0.25 0.34 8.06 -2.91 -0.02 0.32 16 38 H 0.42 9.56 7.01 -92.71 -0.65 8.91 16 39 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 42 H 0.03 1.33 7.30 -2.39 -0.02 1.31 16 43 H 0.03 1.33 7.52 -2.39 -0.02 1.31 16 44 H 0.40 8.50 9.09 -74.06 -0.67 7.83 16 Total: -1.00 -75.64 374.72 -1.23 -76.87 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: -0.95 Total: 28.70 kcal Atomic # 6 Polarization: 26.28 SS G_CDS: 6.23 Total: 32.51 kcal Atomic # 7 Polarization: -122.23 SS G_CDS: -6.56 Total: -128.79 kcal Atomic # 8 Polarization: -54.93 SS G_CDS: -1.98 Total: -56.91 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -75.64 -1.23 -76.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221022911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.959 kcal (2) G-P(sol) polarization free energy of solvation -75.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds