Wall clock time and date at job start Tue Mar 31 2020 21:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47044 * 2 1 4 4 C 1.52999 * 109.46948 * 239.99728 * 2 1 3 5 5 C 1.50701 * 109.47111 * 65.00626 * 4 2 1 6 6 O 1.21281 * 119.99905 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99991 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99942 * 179.97438 * 7 5 4 9 9 C 1.53513 * 114.16704 * 204.99849 * 8 7 5 10 10 N 1.47484 * 87.93060 * 220.32609 * 9 8 7 11 11 C 1.46895 * 110.99756 * 138.70311 * 10 9 8 12 12 C 1.50706 * 109.47182 * 170.00145 * 11 10 9 13 13 O 1.21297 * 119.99667 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00081 * 179.72734 * 12 11 10 15 15 C 1.37095 * 119.99878 * 180.02562 * 14 12 11 16 16 H 1.08004 * 120.00160 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00380 * 179.97438 * 15 14 12 18 18 N 1.31412 * 119.99401 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00554 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46783 * 60.00161 * 19 17 15 21 21 H 1.48496 * 109.47291 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46865 * 300.00343 * 19 17 15 23 23 C 1.47477 * 87.83167 * 27.01125 * 10 9 8 24 24 C 1.53002 * 109.46866 * 119.99794 * 2 1 3 25 25 F 1.39898 * 109.46888 * 179.97438 * 24 2 1 26 26 F 1.39899 * 109.47237 * 300.00211 * 24 2 1 27 27 F 1.39900 * 109.47213 * 60.00007 * 24 2 1 28 28 H 1.08996 * 109.47166 * 300.00497 * 1 2 3 29 29 H 1.09005 * 109.46763 * 59.99871 * 1 2 3 30 30 H 1.08995 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47550 * 304.99893 * 4 2 1 32 32 H 1.09005 * 109.46975 * 184.99909 * 4 2 1 33 33 H 0.96992 * 120.00120 * 359.97438 * 7 5 4 34 34 H 1.09003 * 113.37948 * 338.07305 * 8 7 5 35 35 H 1.09005 * 113.47855 * 105.56484 * 9 8 7 36 36 H 1.08997 * 113.47719 * 335.09509 * 9 8 7 37 37 H 1.09001 * 109.47613 * 50.00491 * 11 10 9 38 38 H 1.08998 * 109.47678 * 290.00386 * 11 10 9 39 39 H 0.96998 * 120.00525 * 359.97438 * 14 12 11 40 40 H 0.97004 * 120.00112 * 179.97438 * 18 17 15 41 41 H 1.09000 * 113.48071 * 87.76093 * 23 10 9 42 42 H 1.09004 * 113.47566 * 218.21901 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6415 0.0570 -2.4766 6 8 1.0111 1.0870 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 1.5975 0.3649 -4.8933 9 6 1.4937 -0.4831 -6.1687 10 7 2.1240 0.6331 -6.8981 11 6 3.1121 0.1383 -7.8659 12 6 3.5535 1.2709 -8.7568 13 8 3.0908 2.3812 -8.6004 14 7 4.4668 1.0514 -9.7233 15 6 4.8687 2.0818 -10.5333 16 1 4.4532 3.0694 -10.3972 17 6 5.8107 1.8557 -11.5295 18 7 6.3166 0.6542 -11.6947 19 14 6.3578 3.2596 -12.6337 20 1 6.9622 4.3339 -11.8056 21 1 7.3615 2.7608 -13.6078 22 1 5.1842 3.7998 -13.3657 23 6 2.7728 1.0205 -5.6316 24 6 2.0400 -0.7212 1.2493 25 9 3.4390 -0.7217 1.2490 26 9 1.5736 -0.0617 2.3915 27 9 1.5737 -2.0402 1.2493 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6055 -1.7199 -1.2951 32 1 3.1264 -0.7995 -1.2056 33 1 2.4898 -1.2149 -3.7907 34 1 0.7484 1.0281 -4.7279 35 1 0.4669 -0.6788 -6.4778 36 1 2.1056 -1.3847 -6.1417 37 1 2.6637 -0.6480 -8.4732 38 1 3.9744 -0.2618 -7.3326 39 1 4.8403 0.1646 -9.8453 40 1 6.9740 0.4962 -12.3903 41 1 3.7261 0.5203 -5.4612 42 1 2.8302 2.0992 -5.4853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268444937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:21 Heat of formation + Delta-G solvation = -193.183730 kcal Electronic energy + Delta-G solvation = -28604.430531 eV Core-core repulsion = 23784.598408 eV Total energy + Delta-G solvation = -4819.832123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.52369 -47.99969 -47.98664 -40.82387 -39.54059 -37.76866 -35.52287 -34.35316 -33.84890 -31.29224 -30.20616 -28.43949 -26.72377 -25.98977 -25.47671 -23.70067 -22.06918 -20.81478 -20.23640 -19.28636 -18.99662 -18.73938 -18.08016 -17.91816 -16.79850 -16.66646 -16.23880 -16.01304 -15.30359 -15.17304 -14.94445 -14.69138 -14.63137 -14.42195 -14.29435 -14.17210 -14.11972 -13.97862 -13.82779 -13.57684 -13.30936 -12.99991 -12.78943 -12.60000 -12.32353 -11.91680 -11.84960 -11.75144 -11.65743 -11.51056 -11.25053 -11.06467 -10.71285 -10.44737 -10.23503 -10.20010 -9.50004 -9.29698 -8.90604 -8.24795 -7.97153 -6.42511 -3.83242 2.21001 2.24840 2.74356 3.19763 3.25246 3.29890 3.37541 3.55316 3.62371 3.88322 3.97909 4.14441 4.19436 4.29834 4.38102 4.47983 4.71604 4.74242 4.92219 4.96536 4.99061 5.11713 5.25616 5.26928 5.32909 5.44006 5.52631 5.59785 5.62470 5.74533 5.85074 5.99520 6.16353 6.24939 6.44660 7.03253 7.13253 7.54414 7.83520 8.04919 8.61125 9.17674 9.53304 10.05806 10.75268 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.027842 B = 0.001717 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.425061 B =16305.017283 C =16559.286814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.118 4.118 3 H 0.124 0.876 4 C -0.146 4.146 5 C 0.522 3.478 6 O -0.530 6.530 7 N -0.716 5.716 8 C 0.118 3.882 9 C -0.014 4.014 10 N -0.434 5.434 11 C 0.011 3.989 12 C 0.445 3.555 13 O -0.574 6.574 14 N -0.566 5.566 15 C -0.299 4.299 16 H 0.102 0.898 17 C 0.022 3.978 18 N -0.904 5.904 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.009 4.009 24 C 0.453 3.547 25 F -0.184 7.184 26 F -0.181 7.181 27 F -0.183 7.183 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.402 0.598 34 H 0.131 0.869 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.391 0.609 40 H 0.272 0.728 41 H 0.070 0.930 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.077 -10.312 24.148 27.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.138 4.138 3 H 0.142 0.858 4 C -0.186 4.186 5 C 0.308 3.692 6 O -0.407 6.407 7 N -0.367 5.367 8 C 0.012 3.988 9 C -0.144 4.144 10 N -0.156 5.156 11 C -0.121 4.121 12 C 0.230 3.770 13 O -0.457 6.457 14 N -0.204 5.204 15 C -0.428 4.428 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.545 5.545 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.139 4.139 24 C 0.399 3.601 25 F -0.165 7.165 26 F -0.162 7.162 27 F -0.164 7.164 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.237 0.763 34 H 0.149 0.851 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.224 0.776 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.082 -8.413 23.796 26.824 hybrid contribution 1.708 -1.197 -0.247 2.100 sum -7.374 -9.611 23.549 26.482 Atomic orbital electron populations 1.22019 0.90786 1.03447 1.05418 1.22174 1.00447 1.01797 0.89375 0.85778 1.21732 1.04173 1.00819 0.91865 1.20230 0.79083 0.85509 0.84387 1.90721 1.39439 1.24127 1.86384 1.45961 1.57450 1.27677 1.05636 1.22739 0.99381 0.94635 0.82009 1.24322 1.02303 0.94975 0.92770 1.68800 1.21017 1.20789 1.05013 1.22501 0.95174 0.97904 0.96524 1.19634 0.83701 0.89528 0.84129 1.90538 1.58340 1.24489 1.72300 1.41855 1.36840 1.12333 1.29337 1.19650 1.20879 0.91929 1.10349 0.87991 1.25256 0.96866 0.97639 0.98226 1.69602 1.30082 1.20696 1.34122 0.85912 0.78397 0.80501 0.79387 1.19914 1.20990 1.19878 1.24404 0.96301 1.03474 0.89704 1.20640 0.75416 0.77690 0.86350 1.93191 1.30104 1.96417 1.96808 1.93187 1.88442 1.80718 1.53888 1.93172 1.88444 1.37993 1.96835 0.91280 0.88260 0.91746 0.87355 0.87413 0.76337 0.85115 0.88816 0.91082 0.89222 0.92228 0.77575 0.91854 0.91167 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 8.69 37.16 0.32 -0.74 16 2 C -0.12 -0.77 2.01 -90.62 -0.18 -0.95 16 3 H 0.12 0.87 7.95 -51.93 -0.41 0.46 16 4 C -0.15 -0.80 4.93 -27.88 -0.14 -0.94 16 5 C 0.52 4.43 7.55 -10.98 -0.08 4.35 16 6 O -0.53 -6.44 13.56 5.56 0.08 -6.36 16 7 N -0.72 -5.45 5.39 -53.54 -0.29 -5.74 16 8 C 0.12 1.25 4.59 -67.72 -0.31 0.94 16 9 C -0.01 -0.15 7.45 -7.55 -0.06 -0.20 16 10 N -0.43 -6.83 5.82 -246.13 -1.43 -8.26 16 11 C 0.01 0.19 5.30 -4.98 -0.03 0.16 16 12 C 0.45 10.52 7.85 -10.98 -0.09 10.43 16 13 O -0.57 -15.89 16.01 5.54 0.09 -15.80 16 14 N -0.57 -14.29 5.29 -10.96 -0.06 -14.34 16 15 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 16 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 17 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 18 N -0.90 -24.43 13.05 55.50 0.72 -23.70 16 19 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 23 C -0.01 -0.12 7.52 -7.56 -0.06 -0.17 16 24 C 0.45 3.26 2.69 37.16 0.10 3.36 16 25 F -0.18 -1.45 16.71 2.25 0.04 -1.41 16 26 F -0.18 -1.50 16.80 2.25 0.04 -1.46 16 27 F -0.18 -1.36 16.37 2.25 0.04 -1.32 16 28 H 0.07 0.44 7.80 -51.93 -0.41 0.03 16 29 H 0.10 0.83 5.95 -51.93 -0.31 0.52 16 30 H 0.06 0.37 7.80 -51.93 -0.41 -0.04 16 31 H 0.11 0.40 7.94 -51.93 -0.41 -0.01 16 32 H 0.11 0.46 7.66 -51.93 -0.40 0.06 16 33 H 0.40 1.91 8.75 -40.82 -0.36 1.55 16 34 H 0.13 1.62 7.46 -51.93 -0.39 1.23 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.59 7.90 -51.93 -0.41 0.18 16 37 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 38 H 0.06 0.87 7.30 -51.93 -0.38 0.50 16 39 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 40 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.07 0.86 7.42 -51.93 -0.39 0.48 16 42 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 365.30 15.07 5.51 5.51 Total: -1.00 -33.86 365.30 -6.41 -40.27 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.36 Total: 8.34 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -0.76 Total: 8.24 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -1.05 Total: -52.05 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.16 Total: -22.16 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.11 Total: -4.19 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.86 -6.41 -40.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268444937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.910 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds