Wall clock time and date at job start Tue Mar 31 2020 21:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.47044 * 2 1 4 4 C 1.52999 * 109.46948 * 239.99728 * 2 1 3 5 5 C 1.50701 * 109.47111 * 65.00626 * 4 2 1 6 6 O 1.21281 * 119.99905 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99991 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99942 * 179.97438 * 7 5 4 9 9 C 1.53513 * 114.16704 * 204.99849 * 8 7 5 10 10 N 1.47484 * 87.93060 * 220.32609 * 9 8 7 11 11 C 1.46895 * 110.99756 * 138.70311 * 10 9 8 12 12 C 1.50706 * 109.47182 * 170.00145 * 11 10 9 13 13 O 1.21297 * 119.99667 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00081 * 179.72734 * 12 11 10 15 15 C 1.37095 * 119.99878 * 180.02562 * 14 12 11 16 16 H 1.08004 * 120.00160 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00380 * 179.97438 * 15 14 12 18 18 N 1.31412 * 119.99401 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00554 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46783 * 60.00161 * 19 17 15 21 21 H 1.48496 * 109.47291 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46865 * 300.00343 * 19 17 15 23 23 C 1.47477 * 87.83167 * 27.01125 * 10 9 8 24 24 C 1.53002 * 109.46866 * 119.99794 * 2 1 3 25 25 F 1.39898 * 109.46888 * 179.97438 * 24 2 1 26 26 F 1.39899 * 109.47237 * 300.00211 * 24 2 1 27 27 F 1.39900 * 109.47213 * 60.00007 * 24 2 1 28 28 H 1.08996 * 109.47166 * 300.00497 * 1 2 3 29 29 H 1.09005 * 109.46763 * 59.99871 * 1 2 3 30 30 H 1.08995 * 109.47044 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47550 * 304.99893 * 4 2 1 32 32 H 1.09005 * 109.46975 * 184.99909 * 4 2 1 33 33 H 0.96992 * 120.00120 * 359.97438 * 7 5 4 34 34 H 1.09003 * 113.37948 * 338.07305 * 8 7 5 35 35 H 1.09005 * 113.47855 * 105.56484 * 9 8 7 36 36 H 1.08997 * 113.47719 * 335.09509 * 9 8 7 37 37 H 1.09001 * 109.47613 * 50.00491 * 11 10 9 38 38 H 1.08998 * 109.47678 * 290.00386 * 11 10 9 39 39 H 0.96998 * 120.00525 * 359.97438 * 14 12 11 40 40 H 0.97004 * 120.00112 * 179.97438 * 18 17 15 41 41 H 1.09000 * 113.48071 * 87.76093 * 23 10 9 42 42 H 1.09004 * 113.47566 * 218.21901 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6415 0.0570 -2.4766 6 8 1.0111 1.0870 -2.3633 7 7 1.9854 -0.3915 -3.7001 8 6 1.5975 0.3649 -4.8933 9 6 1.4937 -0.4831 -6.1687 10 7 2.1240 0.6331 -6.8981 11 6 3.1121 0.1383 -7.8659 12 6 3.5535 1.2709 -8.7568 13 8 3.0908 2.3812 -8.6004 14 7 4.4668 1.0514 -9.7233 15 6 4.8687 2.0818 -10.5333 16 1 4.4532 3.0694 -10.3972 17 6 5.8107 1.8557 -11.5295 18 7 6.3166 0.6542 -11.6947 19 14 6.3578 3.2596 -12.6337 20 1 6.9622 4.3339 -11.8056 21 1 7.3615 2.7608 -13.6078 22 1 5.1842 3.7998 -13.3657 23 6 2.7728 1.0205 -5.6316 24 6 2.0400 -0.7212 1.2493 25 9 3.4390 -0.7217 1.2490 26 9 1.5736 -0.0617 2.3915 27 9 1.5737 -2.0402 1.2493 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6055 -1.7199 -1.2951 32 1 3.1264 -0.7995 -1.2056 33 1 2.4898 -1.2149 -3.7907 34 1 0.7484 1.0281 -4.7279 35 1 0.4669 -0.6788 -6.4778 36 1 2.1056 -1.3847 -6.1417 37 1 2.6637 -0.6480 -8.4732 38 1 3.9744 -0.2618 -7.3326 39 1 4.8403 0.1646 -9.8453 40 1 6.9740 0.4962 -12.3903 41 1 3.7261 0.5203 -5.4612 42 1 2.8302 2.0992 -5.4853 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268444937.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:20 Heat of formation + Delta-G solvation = -220.244897 kcal Electronic energy + Delta-G solvation = -28605.603991 eV Core-core repulsion = 23784.598408 eV Total energy + Delta-G solvation = -4821.005583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -51.10902 -48.60278 -48.56383 -41.75024 -40.50210 -39.51252 -36.13115 -35.93285 -35.09932 -33.29068 -31.38465 -29.15508 -27.38219 -27.10474 -26.93222 -25.07849 -22.76332 -21.53656 -21.19181 -20.93244 -19.90950 -19.59083 -19.33322 -18.64163 -17.89725 -17.55768 -17.45766 -16.77505 -16.53130 -16.45297 -16.11419 -15.73073 -15.58839 -15.48561 -15.19279 -15.01304 -14.89629 -14.75990 -14.71416 -14.48028 -14.35085 -14.13497 -13.69133 -13.66934 -13.50323 -13.30296 -13.00688 -12.73056 -12.49507 -12.43068 -12.37044 -12.26142 -12.19579 -12.12003 -11.82302 -11.50014 -10.96396 -10.39355 -10.07963 -10.01229 -9.76614 -8.47041 -5.95511 1.39069 1.40897 1.51578 1.55830 1.65271 2.05808 2.08189 2.29412 2.78898 2.89928 3.04172 3.07111 3.19085 3.31904 3.53224 3.59666 3.78536 3.86792 3.92507 4.11280 4.23127 4.28475 4.31874 4.41620 4.53553 4.54681 4.56372 4.71264 4.80323 4.80701 4.94489 4.96467 5.25707 5.34478 5.40230 5.45724 5.88113 6.07289 6.51963 6.61127 7.13314 7.22560 7.56905 8.14179 8.70020 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.027842 B = 0.001717 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.425061 B =16305.017283 C =16559.286814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 H 0.116 0.884 4 C -0.138 4.138 5 C 0.521 3.479 6 O -0.571 6.571 7 N -0.702 5.702 8 C 0.135 3.865 9 C 0.002 3.998 10 N -0.477 5.477 11 C 0.026 3.974 12 C 0.438 3.562 13 O -0.623 6.623 14 N -0.575 5.575 15 C -0.335 4.335 16 H 0.075 0.925 17 C -0.012 4.012 18 N -0.919 5.919 19 Si 0.991 3.009 20 H -0.273 1.273 21 H -0.269 1.269 22 H -0.273 1.273 23 C -0.013 4.013 24 C 0.458 3.542 25 F -0.187 7.187 26 F -0.189 7.189 27 F -0.182 7.182 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.134 0.866 32 H 0.127 0.873 33 H 0.421 0.579 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.088 0.912 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.579 -12.674 24.682 28.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.136 4.136 3 H 0.134 0.866 4 C -0.177 4.177 5 C 0.308 3.692 6 O -0.451 6.451 7 N -0.354 5.354 8 C 0.028 3.972 9 C -0.127 4.127 10 N -0.200 5.200 11 C -0.106 4.106 12 C 0.226 3.774 13 O -0.508 6.508 14 N -0.213 5.213 15 C -0.464 4.464 16 H 0.093 0.907 17 C -0.212 4.212 18 N -0.560 5.560 19 Si 0.815 3.185 20 H -0.198 1.198 21 H -0.193 1.193 22 H -0.199 1.199 23 C -0.144 4.144 24 C 0.404 3.596 25 F -0.168 7.168 26 F -0.170 7.170 27 F -0.163 7.163 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.152 0.848 32 H 0.145 0.855 33 H 0.259 0.741 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.107 0.893 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.565 -10.845 24.342 27.991 hybrid contribution 1.519 -0.452 -0.353 1.624 sum -7.046 -11.297 23.989 27.436 Atomic orbital electron populations 1.21963 0.90958 1.03926 1.04511 1.22138 1.00293 1.01543 0.89672 0.86599 1.21749 1.05434 1.01130 0.89404 1.20749 0.78149 0.85051 0.85223 1.90723 1.41287 1.26094 1.86950 1.45759 1.57280 1.27909 1.04457 1.22260 0.97154 0.94448 0.83325 1.24342 1.02914 0.94633 0.90802 1.68713 1.21391 1.23938 1.05950 1.22377 0.96831 0.95151 0.96206 1.20904 0.82033 0.90754 0.83720 1.90502 1.59634 1.27232 1.73475 1.41925 1.37570 1.11994 1.29767 1.19589 1.22526 0.91913 1.12396 0.90701 1.26002 0.96257 1.00107 0.98835 1.69652 1.30057 1.21787 1.34472 0.85018 0.78117 0.77672 0.77712 1.19841 1.19291 1.19856 1.24454 0.98283 1.01763 0.89880 1.20641 0.75181 0.77631 0.86171 1.93186 1.30397 1.96433 1.96807 1.93173 1.88533 1.80921 1.54415 1.93174 1.88410 1.37912 1.96818 0.91340 0.89996 0.90545 0.84771 0.85512 0.74114 0.87275 0.87957 0.87530 0.86789 0.89303 0.76886 0.91270 0.89369 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 8.69 71.98 0.63 -1.31 16 2 C -0.12 -1.36 2.01 -10.79 -0.02 -1.38 16 3 H 0.12 1.57 7.95 -2.39 -0.02 1.55 16 4 C -0.14 -1.14 4.93 29.85 0.15 -0.99 16 5 C 0.52 7.95 7.55 87.66 0.66 8.61 16 6 O -0.57 -13.82 13.56 -3.03 -0.04 -13.86 16 7 N -0.70 -8.86 5.39 -441.69 -2.38 -11.24 16 8 C 0.13 2.68 4.59 45.44 0.21 2.89 16 9 C 0.00 0.04 7.45 83.57 0.62 0.66 16 10 N -0.48 -14.48 5.82 -932.63 -5.43 -19.91 16 11 C 0.03 0.84 5.30 85.56 0.45 1.29 16 12 C 0.44 20.95 7.85 87.66 0.69 21.64 16 13 O -0.62 -35.75 16.01 -3.08 -0.05 -35.80 16 14 N -0.57 -29.36 5.29 -306.98 -1.62 -30.98 16 15 C -0.33 -19.14 9.68 84.04 0.81 -18.33 16 16 H 0.07 4.61 7.16 -2.91 -0.02 4.59 16 17 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 18 N -0.92 -49.10 13.05 21.66 0.28 -48.82 16 19 Si 0.99 43.08 29.55 68.60 2.03 45.11 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 C -0.01 -0.36 7.52 83.57 0.63 0.27 16 24 C 0.46 5.82 2.69 71.98 0.19 6.01 16 25 F -0.19 -2.60 16.71 44.97 0.75 -1.85 16 26 F -0.19 -2.94 16.80 44.97 0.76 -2.19 16 27 F -0.18 -2.27 16.37 44.97 0.74 -1.54 16 28 H 0.07 0.83 7.80 -2.39 -0.02 0.81 16 29 H 0.08 1.36 5.95 -2.38 -0.01 1.34 16 30 H 0.08 0.74 7.80 -2.39 -0.02 0.72 16 31 H 0.13 0.47 7.94 -2.39 -0.02 0.45 16 32 H 0.13 0.64 7.66 -2.38 -0.02 0.62 16 33 H 0.42 2.26 8.75 -92.71 -0.81 1.45 16 34 H 0.11 2.72 7.46 -2.39 -0.02 2.70 16 35 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.11 1.22 7.90 -2.39 -0.02 1.21 16 37 H 0.11 3.09 8.08 -2.39 -0.02 3.07 16 38 H 0.09 2.33 7.30 -2.39 -0.02 2.31 16 39 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 40 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 41 H 0.09 1.99 7.42 -2.39 -0.02 1.97 16 42 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 Total: -1.00 -76.59 365.30 0.07 -76.52 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.45 Total: 25.37 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 5.49 Total: 19.18 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -9.15 Total: -110.94 kcal Atomic # 8 Polarization: -49.57 SS G_CDS: -0.09 Total: -49.66 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 2.24 Total: -5.57 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -76.59 0.07 -76.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268444937.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.724 kcal (2) G-P(sol) polarization free energy of solvation -76.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds