Wall clock time and date at job start Tue Mar 31 2020 21:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47382 * 2 1 4 4 C 1.52999 * 109.47444 * 120.00075 * 2 1 3 5 5 C 1.50701 * 109.47111 * 295.00369 * 4 2 1 6 6 O 1.21281 * 119.99905 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99991 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99942 * 179.97438 * 7 5 4 9 9 C 1.53513 * 114.16704 * 204.99849 * 8 7 5 10 10 N 1.47484 * 87.93060 * 220.32609 * 9 8 7 11 11 C 1.46895 * 110.99756 * 138.70311 * 10 9 8 12 12 C 1.50706 * 109.47182 * 170.00145 * 11 10 9 13 13 O 1.21297 * 119.99667 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00081 * 179.72734 * 12 11 10 15 15 C 1.37095 * 119.99878 * 180.02562 * 14 12 11 16 16 H 1.08004 * 120.00160 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00380 * 179.97438 * 15 14 12 18 18 N 1.31404 * 120.00261 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99599 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47644 * 89.99834 * 19 17 15 21 21 H 1.48506 * 109.47143 * 209.99780 * 19 17 15 22 22 H 1.48501 * 109.47120 * 329.99495 * 19 17 15 23 23 C 1.47477 * 87.83167 * 27.01125 * 10 9 8 24 24 C 1.52994 * 109.46997 * 240.00272 * 2 1 3 25 25 F 1.39906 * 109.46984 * 299.99878 * 24 2 1 26 26 F 1.39903 * 109.47398 * 59.99776 * 24 2 1 27 27 F 1.39900 * 109.47321 * 180.02562 * 24 2 1 28 28 H 1.09004 * 109.46757 * 300.00062 * 1 2 3 29 29 H 1.09005 * 109.47466 * 59.99356 * 1 2 3 30 30 H 1.08994 * 109.47482 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47550 * 174.99636 * 4 2 1 32 32 H 1.09005 * 109.46975 * 54.99652 * 4 2 1 33 33 H 0.96992 * 120.00120 * 359.97438 * 7 5 4 34 34 H 1.09003 * 113.37948 * 338.07305 * 8 7 5 35 35 H 1.09005 * 113.47855 * 105.56484 * 9 8 7 36 36 H 1.08997 * 113.47719 * 335.09509 * 9 8 7 37 37 H 1.09001 * 109.47613 * 50.00491 * 11 10 9 38 38 H 1.08998 * 109.47678 * 290.00386 * 11 10 9 39 39 H 0.96998 * 120.00525 * 359.97438 * 14 12 11 40 40 H 0.97009 * 120.00065 * 180.02562 * 18 17 15 41 41 H 1.09000 * 113.48071 * 87.76093 * 23 10 9 42 42 H 1.09004 * 113.47566 * 218.21901 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 8 1.0116 1.0873 2.3633 7 7 1.9845 -0.3920 3.7002 8 6 1.5974 0.3649 4.8933 9 6 2.5041 0.1283 6.1092 10 7 1.2904 0.1288 6.9472 11 6 1.3561 -0.9242 7.9693 12 6 0.2288 -0.7409 8.9526 13 8 -0.5527 0.1765 8.8150 14 7 0.0856 -1.5997 9.9813 15 6 -0.9402 -1.4332 10.8754 16 1 -1.6333 -0.6135 10.7557 17 6 -1.0884 -2.3189 11.9358 18 7 -2.0713 -2.1590 12.7931 19 14 0.1108 -3.7361 12.1433 20 1 1.2500 -3.3007 12.9905 21 1 -0.5808 -4.8785 12.7929 22 1 0.6162 -4.1558 10.8116 23 6 0.5406 -0.3302 5.7631 24 6 2.0399 -0.7212 -1.2492 25 9 1.5736 -2.0402 -1.2492 26 9 1.5736 -0.0617 -2.3915 27 9 3.4389 -0.7217 -1.2490 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1263 -0.7995 1.2055 32 1 1.6054 -1.7198 1.2951 33 1 2.4878 -1.2162 3.7908 34 1 1.3880 1.4151 4.6902 35 1 3.1763 0.9607 6.3182 36 1 3.0169 -0.8333 6.0880 37 1 2.3095 -0.8623 8.4941 38 1 1.2669 -1.9001 7.4921 39 1 0.7078 -2.3360 10.0887 40 1 -2.1745 -2.7771 13.5336 41 1 0.5292 -1.4142 5.6495 42 1 -0.4515 0.1135 5.6786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268444938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:26 Heat of formation + Delta-G solvation = -185.837420 kcal Electronic energy + Delta-G solvation = -28686.314511 eV Core-core repulsion = 23866.800948 eV Total energy + Delta-G solvation = -4819.513563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.54765 -48.03004 -48.00479 -40.89157 -39.61243 -37.96460 -35.55120 -34.40840 -33.90819 -31.70549 -30.36938 -28.50590 -26.74350 -26.06672 -25.57060 -23.58031 -22.07661 -20.86488 -20.27237 -19.42038 -19.02482 -18.76860 -18.42999 -18.08689 -16.83813 -16.74380 -16.23733 -16.07245 -15.40061 -15.16198 -14.97362 -14.89431 -14.71152 -14.54541 -14.44217 -14.19111 -14.14226 -13.93766 -13.67369 -13.54479 -13.32198 -13.01168 -12.82369 -12.73410 -12.45705 -12.21763 -11.93552 -11.89728 -11.76654 -11.67459 -11.33803 -11.22067 -10.81228 -10.62485 -10.24654 -9.99129 -9.58299 -9.35818 -9.00531 -8.38715 -8.19367 -6.32145 -3.83696 2.16964 2.22047 2.69929 2.98863 3.04066 3.12498 3.34904 3.52178 3.59904 3.70977 3.90378 4.08089 4.11636 4.21276 4.32381 4.44558 4.64178 4.68504 4.71024 4.93142 4.97335 5.03703 5.15355 5.19479 5.32790 5.42132 5.43422 5.43997 5.51671 5.69732 5.82536 5.88536 5.93320 6.14402 6.32374 6.92134 7.07317 7.56415 7.79375 8.12920 8.58949 8.94344 9.40913 9.82374 10.81064 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.025779 B = 0.001799 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.902460 B =15557.469500 C =15745.324521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.117 4.117 3 H 0.124 0.876 4 C -0.146 4.146 5 C 0.522 3.478 6 O -0.529 6.529 7 N -0.717 5.717 8 C 0.118 3.882 9 C -0.014 4.014 10 N -0.434 5.434 11 C 0.008 3.992 12 C 0.454 3.546 13 O -0.555 6.555 14 N -0.593 5.593 15 C -0.304 4.304 16 H 0.119 0.881 17 C 0.040 3.960 18 N -0.881 5.881 19 Si 0.881 3.119 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.271 1.271 23 C -0.009 4.009 24 C 0.453 3.547 25 F -0.182 7.182 26 F -0.181 7.181 27 F -0.185 7.185 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.402 0.598 34 H 0.132 0.868 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.369 0.631 40 H 0.273 0.727 41 H 0.071 0.929 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.146 -1.943 -27.180 30.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.137 4.137 3 H 0.142 0.858 4 C -0.186 4.186 5 C 0.308 3.692 6 O -0.405 6.405 7 N -0.368 5.368 8 C 0.013 3.987 9 C -0.144 4.144 10 N -0.156 5.156 11 C -0.124 4.124 12 C 0.239 3.761 13 O -0.435 6.435 14 N -0.233 5.233 15 C -0.433 4.433 16 H 0.137 0.863 17 C -0.163 4.163 18 N -0.522 5.522 19 Si 0.707 3.293 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.196 1.196 23 C -0.140 4.140 24 C 0.399 3.601 25 F -0.164 7.164 26 F -0.162 7.162 27 F -0.166 7.166 28 H 0.118 0.882 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.236 0.764 34 H 0.150 0.850 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.202 0.798 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.831 -0.061 -26.775 29.690 hybrid contribution 1.554 -2.750 -0.052 3.159 sum 14.385 -2.811 -26.827 30.569 Atomic orbital electron populations 1.22029 0.90688 1.03593 1.05481 1.22170 1.00533 1.01686 0.89343 0.85831 1.21734 1.04045 1.00937 0.91874 1.20234 0.79109 0.85504 0.84358 1.90726 1.39157 1.24254 1.86412 1.45953 1.57694 1.27502 1.05629 1.22730 0.95722 0.98290 0.81983 1.24330 0.95550 1.02293 0.92203 1.68801 1.05355 1.37389 1.04048 1.22539 1.00224 0.93866 0.95784 1.19529 0.87809 0.85119 0.83622 1.90581 1.45292 1.32831 1.74813 1.42209 1.28707 1.26814 1.25616 1.19426 1.06151 1.14188 1.03519 0.86289 1.25040 0.97094 0.98106 0.96012 1.69621 1.30155 1.37692 1.14689 0.86663 0.81441 0.82655 0.78526 1.19623 1.20193 1.19645 1.24425 1.00575 0.99151 0.89803 1.20644 0.75345 0.77744 0.86369 1.93180 1.88429 1.37938 1.96830 1.93189 1.88436 1.80715 1.53869 1.93183 1.30185 1.96432 1.96819 0.88193 0.91243 0.91667 0.87464 0.87314 0.76364 0.85029 0.88710 0.91085 0.89083 0.92124 0.79822 0.91619 0.91137 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 8.69 37.16 0.32 -0.79 16 2 C -0.12 -0.74 2.01 -90.62 -0.18 -0.92 16 3 H 0.12 0.79 7.96 -51.92 -0.41 0.38 16 4 C -0.15 -0.75 4.93 -27.88 -0.14 -0.89 16 5 C 0.52 4.22 7.55 -10.98 -0.08 4.14 16 6 O -0.53 -6.25 13.56 5.56 0.08 -6.17 16 7 N -0.72 -5.07 5.39 -53.54 -0.29 -5.35 16 8 C 0.12 1.19 4.59 -67.72 -0.31 0.88 16 9 C -0.01 -0.14 7.45 -7.55 -0.06 -0.19 16 10 N -0.43 -6.46 5.82 -246.13 -1.43 -7.89 16 11 C 0.01 0.13 5.30 -4.98 -0.03 0.10 16 12 C 0.45 10.25 7.85 -10.98 -0.09 10.16 16 13 O -0.55 -15.12 16.01 5.54 0.09 -15.03 16 14 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 15 C -0.30 -8.59 10.16 -14.93 -0.15 -8.74 16 16 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 17 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 18 N -0.88 -25.70 13.96 55.50 0.77 -24.92 16 19 Si 0.88 19.11 27.74 -169.99 -4.71 14.39 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 23 C -0.01 -0.12 7.52 -7.56 -0.06 -0.18 16 24 C 0.45 3.14 2.69 37.15 0.10 3.24 16 25 F -0.18 -1.35 16.37 2.25 0.04 -1.32 16 26 F -0.18 -1.46 16.80 2.25 0.04 -1.42 16 27 F -0.18 -1.35 16.71 2.25 0.04 -1.31 16 28 H 0.10 0.88 5.95 -51.93 -0.31 0.57 16 29 H 0.07 0.45 7.80 -51.93 -0.41 0.05 16 30 H 0.06 0.41 7.80 -51.93 -0.41 0.00 16 31 H 0.11 0.37 7.66 -51.93 -0.40 -0.03 16 32 H 0.11 0.41 7.94 -51.93 -0.41 0.00 16 33 H 0.40 1.66 8.75 -40.82 -0.36 1.30 16 34 H 0.13 1.56 7.46 -51.93 -0.39 1.18 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.52 7.90 -51.93 -0.41 0.11 16 37 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 38 H 0.06 0.79 7.30 -51.93 -0.38 0.42 16 39 H 0.37 7.54 5.76 -40.82 -0.24 7.30 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.07 0.80 7.42 -51.93 -0.39 0.41 16 42 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 362.18 15.07 5.46 5.46 Total: -1.00 -35.17 362.18 -6.07 -41.23 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.32 Total: 8.56 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -0.76 Total: 7.82 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -1.00 Total: -52.21 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.16 Total: -21.20 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.11 Total: -4.04 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.39 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.17 -6.07 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268444938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.603 kcal (2) G-P(sol) polarization free energy of solvation -35.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds