Wall clock time and date at job start Tue Mar 31 2020 21:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47382 * 2 1 4 4 C 1.52999 * 109.47444 * 120.00075 * 2 1 3 5 5 C 1.50701 * 109.47111 * 295.00369 * 4 2 1 6 6 O 1.21281 * 119.99905 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99991 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99942 * 179.97438 * 7 5 4 9 9 C 1.53513 * 114.16704 * 204.99849 * 8 7 5 10 10 N 1.47484 * 87.93060 * 220.32609 * 9 8 7 11 11 C 1.46895 * 110.99756 * 138.70311 * 10 9 8 12 12 C 1.50706 * 109.47182 * 170.00145 * 11 10 9 13 13 O 1.21297 * 119.99667 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00081 * 179.72734 * 12 11 10 15 15 C 1.37095 * 119.99878 * 180.02562 * 14 12 11 16 16 H 1.08004 * 120.00160 * 359.97438 * 15 14 12 17 17 C 1.38950 * 120.00380 * 179.97438 * 15 14 12 18 18 N 1.31404 * 120.00261 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99599 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47644 * 89.99834 * 19 17 15 21 21 H 1.48506 * 109.47143 * 209.99780 * 19 17 15 22 22 H 1.48501 * 109.47120 * 329.99495 * 19 17 15 23 23 C 1.47477 * 87.83167 * 27.01125 * 10 9 8 24 24 C 1.52994 * 109.46997 * 240.00272 * 2 1 3 25 25 F 1.39906 * 109.46984 * 299.99878 * 24 2 1 26 26 F 1.39903 * 109.47398 * 59.99776 * 24 2 1 27 27 F 1.39900 * 109.47321 * 180.02562 * 24 2 1 28 28 H 1.09004 * 109.46757 * 300.00062 * 1 2 3 29 29 H 1.09005 * 109.47466 * 59.99356 * 1 2 3 30 30 H 1.08994 * 109.47482 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47550 * 174.99636 * 4 2 1 32 32 H 1.09005 * 109.46975 * 54.99652 * 4 2 1 33 33 H 0.96992 * 120.00120 * 359.97438 * 7 5 4 34 34 H 1.09003 * 113.37948 * 338.07305 * 8 7 5 35 35 H 1.09005 * 113.47855 * 105.56484 * 9 8 7 36 36 H 1.08997 * 113.47719 * 335.09509 * 9 8 7 37 37 H 1.09001 * 109.47613 * 50.00491 * 11 10 9 38 38 H 1.08998 * 109.47678 * 290.00386 * 11 10 9 39 39 H 0.96998 * 120.00525 * 359.97438 * 14 12 11 40 40 H 0.97009 * 120.00065 * 180.02562 * 18 17 15 41 41 H 1.09000 * 113.48071 * 87.76093 * 23 10 9 42 42 H 1.09004 * 113.47566 * 218.21901 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6413 0.0570 2.4766 6 8 1.0116 1.0873 2.3633 7 7 1.9845 -0.3920 3.7002 8 6 1.5974 0.3649 4.8933 9 6 2.5041 0.1283 6.1092 10 7 1.2904 0.1288 6.9472 11 6 1.3561 -0.9242 7.9693 12 6 0.2288 -0.7409 8.9526 13 8 -0.5527 0.1765 8.8150 14 7 0.0856 -1.5997 9.9813 15 6 -0.9402 -1.4332 10.8754 16 1 -1.6333 -0.6135 10.7557 17 6 -1.0884 -2.3189 11.9358 18 7 -2.0713 -2.1590 12.7931 19 14 0.1108 -3.7361 12.1433 20 1 1.2500 -3.3007 12.9905 21 1 -0.5808 -4.8785 12.7929 22 1 0.6162 -4.1558 10.8116 23 6 0.5406 -0.3302 5.7631 24 6 2.0399 -0.7212 -1.2492 25 9 1.5736 -2.0402 -1.2492 26 9 1.5736 -0.0617 -2.3915 27 9 3.4389 -0.7217 -1.2490 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1263 -0.7995 1.2055 32 1 1.6054 -1.7198 1.2951 33 1 2.4878 -1.2162 3.7908 34 1 1.3880 1.4151 4.6902 35 1 3.1763 0.9607 6.3182 36 1 3.0169 -0.8333 6.0880 37 1 2.3095 -0.8623 8.4941 38 1 1.2669 -1.9001 7.4921 39 1 0.7078 -2.3360 10.0887 40 1 -2.1745 -2.7771 13.5336 41 1 0.5292 -1.4142 5.6495 42 1 -0.4515 0.1135 5.6786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268444938.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:25 Heat of formation + Delta-G solvation = -215.655526 kcal Electronic energy + Delta-G solvation = -28687.607521 eV Core-core repulsion = 23866.800948 eV Total energy + Delta-G solvation = -4820.806573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.10640 -48.59827 -48.56302 -41.76214 -40.54382 -39.62188 -36.14116 -35.96721 -35.10783 -33.75660 -31.47378 -29.19144 -27.40793 -27.11087 -26.92179 -24.93930 -22.74822 -21.54610 -21.29298 -21.03175 -20.26446 -19.59032 -19.33128 -18.63969 -17.86588 -17.60194 -17.46204 -16.76520 -16.72425 -16.50943 -15.97416 -15.74955 -15.50469 -15.40590 -15.08893 -15.01230 -14.92800 -14.75966 -14.71372 -14.61684 -14.39921 -14.18992 -14.07183 -13.70899 -13.66415 -13.29916 -13.06329 -12.76486 -12.44438 -12.41500 -12.37557 -12.27185 -12.22360 -11.96283 -11.82508 -11.50260 -10.95141 -10.46962 -10.24569 -10.08251 -9.76954 -8.40858 -6.02349 1.29672 1.36857 1.45535 1.55971 1.65547 1.97303 2.08093 2.23890 2.70335 2.83906 3.01966 3.06896 3.14189 3.24724 3.48454 3.59768 3.78042 3.85418 3.93139 4.09102 4.20485 4.22886 4.30408 4.38376 4.46737 4.54006 4.56233 4.71679 4.79121 4.81663 4.93104 4.96902 5.24437 5.34381 5.45072 5.54350 5.90387 6.01775 6.52639 6.60389 6.89253 7.23575 7.40564 7.99697 8.77097 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.025779 B = 0.001799 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.902460 B =15557.469500 C =15745.324521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.115 4.115 3 H 0.120 0.880 4 C -0.137 4.137 5 C 0.520 3.480 6 O -0.572 6.572 7 N -0.701 5.701 8 C 0.132 3.868 9 C 0.004 3.996 10 N -0.481 5.481 11 C 0.023 3.977 12 C 0.449 3.551 13 O -0.614 6.614 14 N -0.592 5.592 15 C -0.329 4.329 16 H 0.050 0.950 17 C -0.019 4.019 18 N -0.937 5.937 19 Si 0.969 3.031 20 H -0.257 1.257 21 H -0.276 1.276 22 H -0.227 1.227 23 C -0.014 4.014 24 C 0.458 3.542 25 F -0.183 7.183 26 F -0.189 7.189 27 F -0.185 7.185 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.421 0.579 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.125 0.875 38 H 0.100 0.900 39 H 0.390 0.610 40 H 0.279 0.721 41 H 0.093 0.907 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.266 -5.195 -28.593 34.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.135 4.135 3 H 0.138 0.862 4 C -0.177 4.177 5 C 0.308 3.692 6 O -0.452 6.452 7 N -0.353 5.353 8 C 0.026 3.974 9 C -0.125 4.125 10 N -0.204 5.204 11 C -0.109 4.109 12 C 0.237 3.763 13 O -0.498 6.498 14 N -0.235 5.235 15 C -0.459 4.459 16 H 0.068 0.932 17 C -0.217 4.217 18 N -0.577 5.577 19 Si 0.789 3.211 20 H -0.181 1.181 21 H -0.202 1.202 22 H -0.150 1.150 23 C -0.144 4.144 24 C 0.404 3.596 25 F -0.165 7.165 26 F -0.171 7.171 27 F -0.166 7.166 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.260 0.740 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.143 0.857 38 H 0.117 0.883 39 H 0.226 0.774 40 H 0.088 0.912 41 H 0.111 0.889 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.998 -3.341 -28.220 33.113 hybrid contribution 0.157 -1.596 0.338 1.639 sum 17.155 -4.937 -27.882 33.107 Atomic orbital electron populations 1.21968 0.91447 1.03741 1.04438 1.22127 0.99883 1.01747 0.89750 0.86179 1.21751 1.05685 1.00903 0.89354 1.20759 0.78155 0.85049 0.85276 1.90729 1.41069 1.26347 1.87013 1.45737 1.57352 1.27867 1.04370 1.22261 0.94970 0.97017 0.83201 1.24342 0.93836 1.04683 0.89604 1.68704 1.08613 1.37976 1.05144 1.22482 0.97820 0.95992 0.94618 1.21028 0.88477 0.83220 0.83619 1.90558 1.47941 1.35125 1.76143 1.42026 1.28083 1.28039 1.25310 1.18981 1.07326 1.13493 1.06071 0.93159 1.26194 0.99422 1.01604 0.94520 1.69818 1.32830 1.39494 1.15599 0.85308 0.78136 0.76957 0.80717 1.18103 1.20155 1.15025 1.24476 0.99257 1.00373 0.90316 1.20633 0.75248 0.77571 0.86146 1.93178 1.88451 1.38032 1.96819 1.93174 1.88558 1.80913 1.54426 1.93183 1.30184 1.96426 1.96803 0.90221 0.91292 0.90899 0.84885 0.85271 0.74021 0.87604 0.88031 0.87030 0.85712 0.88269 0.77374 0.91169 0.88881 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.69 71.98 0.63 -1.49 16 2 C -0.12 -1.27 2.01 -10.80 -0.02 -1.29 16 3 H 0.12 1.43 7.96 -2.38 -0.02 1.41 16 4 C -0.14 -1.00 4.93 29.85 0.15 -0.85 16 5 C 0.52 7.42 7.55 87.66 0.66 8.08 16 6 O -0.57 -13.50 13.56 -3.03 -0.04 -13.54 16 7 N -0.70 -7.75 5.39 -441.69 -2.38 -10.13 16 8 C 0.13 2.43 4.59 45.44 0.21 2.64 16 9 C 0.00 0.07 7.45 83.57 0.62 0.69 16 10 N -0.48 -13.45 5.82 -932.63 -5.43 -18.88 16 11 C 0.02 0.63 5.30 85.56 0.45 1.08 16 12 C 0.45 20.20 7.85 87.66 0.69 20.89 16 13 O -0.61 -35.19 16.01 -3.08 -0.05 -35.24 16 14 N -0.59 -27.58 5.09 -306.98 -1.56 -29.14 16 15 C -0.33 -19.41 10.16 84.04 0.85 -18.55 16 16 H 0.05 3.57 7.39 -2.91 -0.02 3.55 16 17 C -0.02 -1.06 5.50 84.93 0.47 -0.60 16 18 N -0.94 -56.74 13.96 21.66 0.30 -56.44 16 19 Si 0.97 37.96 27.74 68.60 1.90 39.86 16 20 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 21 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 22 H -0.23 -7.24 6.52 99.48 0.65 -6.59 16 23 C -0.01 -0.35 7.52 83.57 0.63 0.28 16 24 C 0.46 5.48 2.69 71.98 0.19 5.67 16 25 F -0.18 -2.30 16.37 44.97 0.74 -1.56 16 26 F -0.19 -2.84 16.80 44.97 0.76 -2.09 16 27 F -0.18 -2.25 16.71 44.97 0.75 -1.50 16 28 H 0.08 1.44 5.95 -2.38 -0.01 1.43 16 29 H 0.07 0.89 7.80 -2.38 -0.02 0.87 16 30 H 0.07 0.83 7.80 -2.39 -0.02 0.81 16 31 H 0.13 0.35 7.66 -2.39 -0.02 0.33 16 32 H 0.13 0.48 7.94 -2.38 -0.02 0.46 16 33 H 0.42 1.42 8.75 -92.71 -0.81 0.61 16 34 H 0.11 2.55 7.46 -2.39 -0.02 2.54 16 35 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.11 0.90 7.90 -2.39 -0.02 0.88 16 37 H 0.12 2.68 8.08 -2.39 -0.02 2.66 16 38 H 0.10 2.04 7.30 -2.39 -0.02 2.02 16 39 H 0.39 14.61 5.76 -92.71 -0.53 14.08 16 40 H 0.28 15.39 8.31 -92.70 -0.77 14.62 16 41 H 0.09 1.82 7.42 -2.39 -0.02 1.80 16 42 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -86.48 362.18 0.20 -86.28 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.31 Total: 25.83 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 5.53 Total: 16.55 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -9.07 Total: -114.59 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -0.09 Total: -48.78 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 2.24 Total: -5.14 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 1.90 Total: 39.86 kcal Total: -86.48 0.20 -86.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268444938.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.378 kcal (2) G-P(sol) polarization free energy of solvation -86.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds