Wall clock time and date at job start Tue Mar 31 2020 21:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47090 * 2 1 4 4 O 1.42901 * 109.46622 * 120.00112 * 2 1 3 5 5 C 1.50696 * 109.46887 * 240.00042 * 2 1 3 6 6 O 1.21283 * 119.99742 * 249.84479 * 5 2 1 7 7 N 1.34773 * 120.00331 * 69.84860 * 5 2 1 8 8 C 1.46677 * 125.31799 * 355.17892 * 7 5 2 9 9 C 1.54009 * 106.88880 * 161.76705 * 8 7 5 10 10 H 1.08997 * 113.44226 * 263.63940 * 9 8 7 11 11 C 1.51734 * 108.79136 * 136.32079 * 9 8 7 12 12 C 1.47593 * 125.79481 * 85.92622 * 11 9 8 13 13 O 1.21556 * 119.99742 * 0.02562 * 12 11 9 14 14 N 1.34773 * 120.00331 * 179.97438 * 12 11 9 15 15 C 1.47065 * 136.05536 * 359.63065 * 14 12 11 16 16 C 1.53758 * 87.88761 * 152.96141 * 15 14 12 17 17 C 1.50698 * 114.26431 * 139.79097 * 16 15 14 18 18 H 1.08001 * 120.00280 * 266.47249 * 17 16 15 19 19 C 1.37877 * 120.00212 * 86.48031 * 17 16 15 20 20 N 1.31524 * 119.99853 * 359.97438 * 19 17 16 21 21 Si 1.86790 * 120.00393 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47151 * 89.99809 * 21 19 17 23 23 H 1.48502 * 109.47610 * 209.99905 * 21 19 17 24 24 H 1.48502 * 109.47252 * 329.99559 * 21 19 17 25 25 C 1.47063 * 136.05903 * 179.97438 * 14 12 11 26 26 N 1.30632 * 107.51471 * 265.20981 * 11 9 8 27 27 O 1.41384 * 113.12363 * 1.67531 * 26 11 9 28 28 C 1.43982 * 107.63563 * 341.10946 * 27 26 11 29 29 H 1.09000 * 113.75765 * 263.83036 * 28 27 26 30 30 C 1.46609 * 125.31856 * 175.20117 * 7 5 2 31 31 H 1.08995 * 109.47684 * 184.94286 * 1 2 3 32 32 H 1.08993 * 109.47256 * 304.95060 * 1 2 3 33 33 H 1.09000 * 109.46651 * 64.94463 * 1 2 3 34 34 H 0.96691 * 114.00468 * 59.99989 * 4 2 1 35 35 H 1.09003 * 109.97449 * 42.40991 * 8 7 5 36 36 H 1.09004 * 109.97505 * 281.13212 * 8 7 5 37 37 H 1.09000 * 113.46979 * 267.69663 * 15 14 12 38 38 H 1.09005 * 113.46898 * 38.13531 * 15 14 12 39 39 H 1.09001 * 114.39460 * 272.68019 * 16 15 14 40 40 H 0.96996 * 120.00424 * 179.97438 * 20 19 17 41 41 H 1.08999 * 113.47081 * 321.87333 * 25 14 12 42 42 H 1.09005 * 113.46424 * 92.25225 * 25 14 12 43 43 H 1.09001 * 109.74552 * 300.90754 * 30 7 5 44 44 H 1.08994 * 109.74205 * 61.57735 * 30 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0323 -0.7104 -1.2305 6 8 2.5756 -1.7899 -1.1281 7 7 1.8778 -0.1462 -2.4446 8 6 1.1537 1.1005 -2.7144 9 6 1.6150 1.5954 -4.0979 10 1 2.4093 2.3402 -4.0494 11 6 0.4006 2.0570 -4.8818 12 6 -0.2051 3.4016 -4.8227 13 8 0.2730 4.2522 -4.0977 14 7 -1.2877 3.6868 -5.5731 15 6 -2.1240 2.9638 -6.5430 16 6 -3.2843 3.8925 -6.1488 17 6 -4.1363 4.3449 -7.3066 18 1 -3.9206 5.2794 -7.8031 19 6 -5.1913 3.5658 -7.7320 20 7 -5.4538 2.4275 -7.1277 21 14 -6.2477 4.1268 -9.1667 22 1 -5.6762 3.6076 -10.4351 23 1 -7.6288 3.6081 -8.9971 24 1 -6.2782 5.6109 -9.2084 25 6 -2.1488 4.8596 -5.7871 26 7 0.0065 1.0554 -5.6221 27 8 0.7834 -0.1113 -5.4370 28 6 2.0280 0.2850 -4.8311 29 1 2.8388 0.4266 -5.5457 30 6 2.4069 -0.6829 -3.7021 31 1 -0.3634 -1.0238 0.0885 32 1 -0.3633 0.5887 0.8423 33 1 -0.3632 0.4352 -0.9310 34 1 1.7209 -1.5952 1.2330 35 1 1.3947 1.8432 -1.9538 36 1 0.0800 0.9127 -2.7249 37 1 -1.7988 3.0899 -7.5757 38 1 -2.2923 1.9199 -6.2780 39 1 -3.8665 3.5477 -5.2942 40 1 -6.1962 1.8795 -7.4267 41 1 -2.3381 5.4307 -4.8782 42 1 -1.8295 5.4863 -6.6198 43 1 3.4918 -0.7680 -3.6387 44 1 1.9715 -1.6631 -3.8962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270862036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:10 Heat of formation + Delta-G solvation = -41.306731 kcal Electronic energy + Delta-G solvation = -29601.784310 eV Core-core repulsion = 25330.394809 eV Total energy + Delta-G solvation = -4271.389501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.63747 -40.09081 -39.46194 -37.34916 -37.08858 -36.31677 -33.56348 -32.77102 -32.14496 -30.57861 -29.59363 -28.73575 -25.83189 -25.54461 -25.12675 -23.81882 -22.98875 -21.85220 -20.31690 -20.16261 -18.71591 -18.24959 -17.44287 -17.01481 -16.90732 -16.56698 -15.95446 -15.71354 -15.48511 -15.32399 -15.10557 -14.81287 -14.60158 -14.39470 -13.98974 -13.58413 -13.51083 -13.14017 -12.95631 -12.82081 -12.58316 -12.39533 -12.28491 -12.22852 -12.06220 -11.83694 -11.67461 -11.44823 -11.17274 -11.08979 -10.98478 -10.86497 -10.45839 -10.10686 -9.94286 -9.90490 -9.40209 -9.22220 -9.16276 -8.66875 -8.17685 -6.25311 -4.32107 0.83666 2.11937 2.34617 2.50967 2.95832 3.13255 3.19940 3.28235 3.30447 3.72167 3.81152 3.87104 3.99153 4.09702 4.20871 4.28615 4.43273 4.51756 4.58567 4.71079 4.76636 5.00457 5.05479 5.12044 5.19594 5.26832 5.28474 5.37286 5.46638 5.67867 5.70569 5.85218 5.93272 6.06265 6.25195 6.42779 6.47598 6.72397 6.86676 6.88922 7.13141 7.43169 7.64006 7.71297 8.03782 8.06448 8.30612 8.71881 9.35465 10.84229 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.017629 B = 0.002597 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.894846 B =10779.643258 C =10935.641895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.094 3.906 3 H 0.126 0.874 4 O -0.539 6.539 5 C 0.505 3.495 6 O -0.530 6.530 7 N -0.611 5.611 8 C 0.108 3.892 9 C -0.104 4.104 10 H 0.137 0.863 11 C 0.063 3.937 12 C 0.599 3.401 13 O -0.543 6.543 14 N -0.618 5.618 15 C 0.097 3.903 16 C 0.037 3.963 17 C -0.521 4.521 18 H 0.065 0.935 19 C 0.070 3.930 20 N -0.882 5.882 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.103 3.897 26 N -0.220 5.220 27 O -0.179 6.179 28 C 0.034 3.966 29 H 0.126 0.874 30 C 0.109 3.891 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.385 0.615 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.265 0.735 41 H 0.064 0.936 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.459 -3.801 8.819 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.032 3.968 3 H 0.144 0.856 4 O -0.344 6.344 5 C 0.294 3.706 6 O -0.406 6.406 7 N -0.347 5.347 8 C -0.016 4.016 9 C -0.126 4.126 10 H 0.155 0.845 11 C -0.132 4.132 12 C 0.384 3.616 13 O -0.421 6.421 14 N -0.350 5.350 15 C -0.025 4.025 16 C 0.017 3.983 17 C -0.559 4.559 18 H 0.083 0.917 19 C -0.135 4.135 20 N -0.518 5.518 21 Si 0.724 3.276 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.018 4.018 26 N 0.037 4.963 27 O -0.200 6.200 28 C -0.025 4.025 29 H 0.143 0.857 30 C -0.014 4.014 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.234 0.766 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.537 -4.169 8.802 16.677 hybrid contribution -0.093 -0.195 -0.639 0.675 sum 13.444 -4.364 8.163 16.323 Atomic orbital electron populations 1.22524 0.93502 1.04013 1.04420 1.21810 0.94910 0.97171 0.82958 0.85610 1.86596 1.77489 1.30063 1.40256 1.21446 0.79252 0.86045 0.83905 1.90731 1.43450 1.20805 1.85645 1.48222 1.54816 1.24919 1.06748 1.22102 0.97318 0.86174 0.96010 1.23335 0.96427 0.97236 0.95616 0.84543 1.26440 0.96855 0.95703 0.94239 1.16283 0.79307 0.83854 0.82115 1.90794 1.62139 1.47096 1.42039 1.50054 1.25318 1.19742 1.39925 1.23926 0.88554 0.98996 0.90977 1.20411 0.89762 0.90086 0.98014 1.20849 1.13127 1.06820 1.15055 0.91673 1.25036 0.96876 0.94757 0.96794 1.69946 1.29509 1.11998 1.40369 0.86515 0.79601 0.79111 0.82358 1.20453 1.21086 1.19651 1.23529 0.88489 0.89959 0.99855 1.79293 1.11864 0.92703 1.12414 1.91307 1.25608 1.22785 1.80327 1.24532 0.90363 0.92726 0.94883 0.85691 1.21820 1.00167 0.98005 0.81385 0.91344 0.89946 0.90618 0.76587 0.88524 0.90085 0.90233 0.90956 0.91101 0.92479 0.91728 0.90053 0.89189 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.44 9.44 37.16 0.35 -1.09 16 2 C 0.09 0.84 3.36 -27.88 -0.09 0.74 16 3 H 0.13 0.94 7.51 -51.93 -0.39 0.55 16 4 O -0.54 -5.31 13.03 -54.95 -0.72 -6.03 16 5 C 0.50 5.67 7.18 -10.99 -0.08 5.59 16 6 O -0.53 -7.66 16.62 -14.16 -0.24 -7.90 16 7 N -0.61 -6.26 3.31 -172.55 -0.57 -6.83 16 8 C 0.11 1.06 5.08 -3.42 -0.02 1.04 16 9 C -0.10 -1.10 4.03 -89.28 -0.36 -1.46 16 10 H 0.14 1.19 8.14 -51.93 -0.42 0.77 16 11 C 0.06 0.91 6.31 -78.78 -0.50 0.41 16 12 C 0.60 10.33 8.07 -12.45 -0.10 10.23 16 13 O -0.54 -10.08 17.73 5.32 0.09 -9.98 16 14 N -0.62 -11.50 3.69 -186.31 -0.69 -12.19 16 15 C 0.10 1.96 7.38 -8.38 -0.06 1.90 16 16 C 0.04 0.80 3.79 -91.13 -0.35 0.46 16 17 C -0.52 -12.58 8.83 -34.44 -0.30 -12.89 16 18 H 0.07 1.53 7.81 -52.49 -0.41 1.12 16 19 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -23.37 13.26 55.43 0.74 -22.64 16 21 Si 0.90 19.47 29.54 -169.99 -5.02 14.45 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 23 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 C 0.10 1.92 8.17 -8.53 -0.07 1.85 16 26 N -0.22 -3.48 11.13 35.51 0.40 -3.09 16 27 O -0.18 -2.51 12.13 -11.37 -0.14 -2.65 16 28 C 0.03 0.34 4.81 -25.04 -0.12 0.22 16 29 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 30 C 0.11 1.06 6.56 -3.74 -0.02 1.03 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.61 5.63 -51.93 -0.29 0.32 16 34 H 0.38 2.91 8.74 45.56 0.40 3.31 16 35 H 0.10 0.76 7.30 -51.93 -0.38 0.39 16 36 H 0.08 0.89 6.49 -51.93 -0.34 0.55 16 37 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 38 H 0.07 1.54 7.51 -51.93 -0.39 1.15 16 39 H 0.07 1.70 8.11 -51.93 -0.42 1.28 16 40 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 0.96 8.08 -51.93 -0.42 0.54 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -30.55 370.76 -7.53 -38.08 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.15 Total: 3.49 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -1.82 Total: 9.70 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.13 Total: -44.74 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -1.00 Total: -26.56 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.55 -7.53 -38.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270862036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.226 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds