Wall clock time and date at job start Tue Mar 31 2020 21:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47090 * 2 1 4 4 O 1.42901 * 109.46622 * 120.00112 * 2 1 3 5 5 C 1.50696 * 109.46887 * 240.00042 * 2 1 3 6 6 O 1.21283 * 119.99742 * 249.84479 * 5 2 1 7 7 N 1.34773 * 120.00331 * 69.84860 * 5 2 1 8 8 C 1.46677 * 125.31799 * 355.17892 * 7 5 2 9 9 C 1.54009 * 106.88880 * 161.76705 * 8 7 5 10 10 H 1.08997 * 113.44226 * 263.63940 * 9 8 7 11 11 C 1.51734 * 108.79136 * 136.32079 * 9 8 7 12 12 C 1.47593 * 125.79481 * 85.92622 * 11 9 8 13 13 O 1.21556 * 119.99742 * 0.02562 * 12 11 9 14 14 N 1.34773 * 120.00331 * 179.97438 * 12 11 9 15 15 C 1.47065 * 136.05536 * 359.63065 * 14 12 11 16 16 C 1.53758 * 87.88761 * 152.96141 * 15 14 12 17 17 C 1.50698 * 114.26431 * 139.79097 * 16 15 14 18 18 H 1.08001 * 120.00280 * 266.47249 * 17 16 15 19 19 C 1.37877 * 120.00212 * 86.48031 * 17 16 15 20 20 N 1.31524 * 119.99853 * 359.97438 * 19 17 16 21 21 Si 1.86790 * 120.00393 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47151 * 89.99809 * 21 19 17 23 23 H 1.48502 * 109.47610 * 209.99905 * 21 19 17 24 24 H 1.48502 * 109.47252 * 329.99559 * 21 19 17 25 25 C 1.47063 * 136.05903 * 179.97438 * 14 12 11 26 26 N 1.30632 * 107.51471 * 265.20981 * 11 9 8 27 27 O 1.41384 * 113.12363 * 1.67531 * 26 11 9 28 28 C 1.43982 * 107.63563 * 341.10946 * 27 26 11 29 29 H 1.09000 * 113.75765 * 263.83036 * 28 27 26 30 30 C 1.46609 * 125.31856 * 175.20117 * 7 5 2 31 31 H 1.08995 * 109.47684 * 184.94286 * 1 2 3 32 32 H 1.08993 * 109.47256 * 304.95060 * 1 2 3 33 33 H 1.09000 * 109.46651 * 64.94463 * 1 2 3 34 34 H 0.96691 * 114.00468 * 59.99989 * 4 2 1 35 35 H 1.09003 * 109.97449 * 42.40991 * 8 7 5 36 36 H 1.09004 * 109.97505 * 281.13212 * 8 7 5 37 37 H 1.09000 * 113.46979 * 267.69663 * 15 14 12 38 38 H 1.09005 * 113.46898 * 38.13531 * 15 14 12 39 39 H 1.09001 * 114.39460 * 272.68019 * 16 15 14 40 40 H 0.96996 * 120.00424 * 179.97438 * 20 19 17 41 41 H 1.08999 * 113.47081 * 321.87333 * 25 14 12 42 42 H 1.09005 * 113.46424 * 92.25225 * 25 14 12 43 43 H 1.09001 * 109.74552 * 300.90754 * 30 7 5 44 44 H 1.08994 * 109.74205 * 61.57735 * 30 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0323 -0.7104 -1.2305 6 8 2.5756 -1.7899 -1.1281 7 7 1.8778 -0.1462 -2.4446 8 6 1.1537 1.1005 -2.7144 9 6 1.6150 1.5954 -4.0979 10 1 2.4093 2.3402 -4.0494 11 6 0.4006 2.0570 -4.8818 12 6 -0.2051 3.4016 -4.8227 13 8 0.2730 4.2522 -4.0977 14 7 -1.2877 3.6868 -5.5731 15 6 -2.1240 2.9638 -6.5430 16 6 -3.2843 3.8925 -6.1488 17 6 -4.1363 4.3449 -7.3066 18 1 -3.9206 5.2794 -7.8031 19 6 -5.1913 3.5658 -7.7320 20 7 -5.4538 2.4275 -7.1277 21 14 -6.2477 4.1268 -9.1667 22 1 -5.6762 3.6076 -10.4351 23 1 -7.6288 3.6081 -8.9971 24 1 -6.2782 5.6109 -9.2084 25 6 -2.1488 4.8596 -5.7871 26 7 0.0065 1.0554 -5.6221 27 8 0.7834 -0.1113 -5.4370 28 6 2.0280 0.2850 -4.8311 29 1 2.8388 0.4266 -5.5457 30 6 2.4069 -0.6829 -3.7021 31 1 -0.3634 -1.0238 0.0885 32 1 -0.3633 0.5887 0.8423 33 1 -0.3632 0.4352 -0.9310 34 1 1.7209 -1.5952 1.2330 35 1 1.3947 1.8432 -1.9538 36 1 0.0800 0.9127 -2.7249 37 1 -1.7988 3.0899 -7.5757 38 1 -2.2923 1.9199 -6.2780 39 1 -3.8665 3.5477 -5.2942 40 1 -6.1962 1.8795 -7.4267 41 1 -2.3381 5.4307 -4.8782 42 1 -1.8295 5.4863 -6.6198 43 1 3.4918 -0.7680 -3.6387 44 1 1.9715 -1.6631 -3.8962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270862036.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:08 Heat of formation + Delta-G solvation = -63.520707 kcal Electronic energy + Delta-G solvation = -29602.747580 eV Core-core repulsion = 25330.394809 eV Total energy + Delta-G solvation = -4272.352772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.58600 -41.24754 -40.69359 -38.84714 -37.89359 -37.23036 -34.78213 -34.50557 -32.94595 -31.51218 -30.96371 -29.67585 -27.44221 -26.73860 -26.45116 -24.94129 -23.99309 -22.75398 -21.81984 -20.99893 -19.98769 -19.05615 -18.85413 -18.45394 -17.92118 -17.77123 -16.93482 -16.89113 -16.60042 -16.47122 -16.24060 -16.13535 -15.76625 -15.43494 -15.13566 -14.77417 -14.42347 -14.29115 -14.05399 -13.96979 -13.67530 -13.44913 -13.28610 -13.24725 -13.09486 -13.03031 -12.91924 -12.80790 -12.67876 -12.57285 -12.21525 -12.00288 -11.84931 -11.63665 -11.07460 -11.00057 -10.94414 -10.78504 -10.53915 -10.00670 -9.71843 -8.16084 -6.27221 -0.34424 1.26587 1.31454 1.48403 1.51271 1.58221 1.59832 1.79239 1.83585 2.46401 2.81008 2.85697 3.01842 3.12120 3.15416 3.22721 3.38371 3.61181 3.85172 3.88795 3.95390 3.96791 4.05786 4.23466 4.32336 4.34267 4.47807 4.48300 4.51882 4.62220 4.67026 4.70213 4.71116 4.80186 4.91408 4.92644 5.05143 5.08130 5.59685 5.81844 5.81917 6.06053 6.21939 6.47907 6.57421 6.80318 6.82517 6.85727 7.43248 8.93700 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.017629 B = 0.002597 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.894846 B =10779.643258 C =10935.641895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.098 3.902 3 H 0.145 0.855 4 O -0.551 6.551 5 C 0.503 3.497 6 O -0.568 6.568 7 N -0.608 5.608 8 C 0.108 3.892 9 C -0.097 4.097 10 H 0.163 0.837 11 C 0.062 3.938 12 C 0.603 3.397 13 O -0.551 6.551 14 N -0.624 5.624 15 C 0.115 3.885 16 C 0.022 3.978 17 C -0.525 4.525 18 H 0.072 0.928 19 C 0.020 3.980 20 N -0.918 5.918 21 Si 0.957 3.043 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.263 1.263 25 C 0.113 3.887 26 N -0.249 5.249 27 O -0.191 6.191 28 C 0.037 3.963 29 H 0.158 0.842 30 C 0.108 3.892 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.392 0.608 35 H 0.121 0.879 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.263 0.737 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.934 -2.668 8.836 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.036 3.964 3 H 0.162 0.838 4 O -0.358 6.358 5 C 0.293 3.707 6 O -0.447 6.447 7 N -0.343 5.343 8 C -0.016 4.016 9 C -0.118 4.118 10 H 0.181 0.819 11 C -0.132 4.132 12 C 0.390 3.610 13 O -0.429 6.429 14 N -0.356 5.356 15 C -0.008 4.008 16 C 0.003 3.997 17 C -0.564 4.564 18 H 0.090 0.910 19 C -0.180 4.180 20 N -0.556 5.556 21 Si 0.782 3.218 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.187 1.187 25 C -0.008 4.008 26 N 0.009 4.991 27 O -0.214 6.214 28 C -0.021 4.021 29 H 0.175 0.825 30 C -0.015 4.015 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.243 0.757 35 H 0.139 0.861 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.129 0.871 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.023 -3.002 8.819 17.677 hybrid contribution -0.513 -0.570 -0.599 0.973 sum 14.511 -3.573 8.220 17.055 Atomic orbital electron populations 1.22492 0.92683 1.04097 1.04717 1.21929 0.95401 0.97518 0.81535 0.83775 1.86567 1.77829 1.30830 1.40559 1.21913 0.78556 0.85610 0.84646 1.90712 1.45324 1.22462 1.86204 1.48249 1.54358 1.24934 1.06772 1.22144 0.96497 0.86466 0.96488 1.23440 0.95336 0.97833 0.95206 0.81934 1.26233 0.97957 0.94186 0.94854 1.16502 0.78632 0.84782 0.81108 1.90786 1.62243 1.47829 1.42022 1.49958 1.26174 1.19240 1.40266 1.23529 0.88232 0.97719 0.91302 1.20291 0.90540 0.92187 0.96680 1.21213 1.13161 1.06763 1.15215 0.90999 1.25774 0.98286 0.94861 0.99105 1.70066 1.30248 1.13261 1.42074 0.85569 0.77681 0.79003 0.79500 1.20190 1.21542 1.18694 1.23366 0.87028 0.89598 1.00774 1.79273 1.13002 0.93526 1.13297 1.91282 1.27248 1.22124 1.80753 1.24873 0.89612 0.92205 0.95420 0.82505 1.21905 1.01249 0.97259 0.81081 0.91628 0.88696 0.90995 0.75719 0.86082 0.91505 0.90149 0.92556 0.93956 0.92757 0.90773 0.88657 0.87127 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 9.44 71.98 0.68 -1.88 16 2 C 0.10 1.58 3.36 29.85 0.10 1.68 16 3 H 0.14 1.76 7.51 -2.39 -0.02 1.74 16 4 O -0.55 -10.19 13.03 -130.13 -1.70 -11.89 16 5 C 0.50 10.68 7.18 87.66 0.63 11.31 16 6 O -0.57 -16.13 16.62 15.81 0.26 -15.87 16 7 N -0.61 -11.40 3.31 -818.23 -2.71 -14.10 16 8 C 0.11 1.89 5.08 86.69 0.44 2.33 16 9 C -0.10 -1.79 4.03 -9.93 -0.04 -1.83 16 10 H 0.16 2.20 8.14 -2.39 -0.02 2.18 16 11 C 0.06 1.71 6.31 45.54 0.29 2.00 16 12 C 0.60 19.96 8.07 86.71 0.70 20.66 16 13 O -0.55 -19.27 17.73 -3.89 -0.07 -19.34 16 14 N -0.62 -22.77 3.69 -861.64 -3.18 -25.95 16 15 C 0.11 4.67 7.38 83.26 0.61 5.28 16 16 C 0.02 0.99 3.79 -11.13 -0.04 0.95 16 17 C -0.53 -25.37 8.83 25.60 0.23 -25.14 16 18 H 0.07 3.30 7.81 -2.91 -0.02 3.28 16 19 C 0.02 1.02 5.46 84.65 0.46 1.48 16 20 N -0.92 -49.72 13.26 21.45 0.28 -49.44 16 21 Si 0.96 39.88 29.54 68.60 2.03 41.90 16 22 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 25 C 0.11 4.14 8.17 83.17 0.68 4.82 16 26 N -0.25 -7.73 11.13 -41.56 -0.46 -8.19 16 27 O -0.19 -5.18 12.13 -38.30 -0.46 -5.64 16 28 C 0.04 0.65 4.81 31.69 0.15 0.80 16 29 H 0.16 1.77 8.14 -2.39 -0.02 1.75 16 30 C 0.11 1.89 6.56 86.51 0.57 2.45 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.08 5.63 -2.39 -0.01 1.06 16 34 H 0.39 5.71 8.74 -74.06 -0.65 5.06 16 35 H 0.12 1.54 7.30 -2.39 -0.02 1.52 16 36 H 0.07 1.39 6.49 -2.38 -0.02 1.38 16 37 H 0.08 3.23 8.10 -2.39 -0.02 3.22 16 38 H 0.06 2.46 7.51 -2.38 -0.02 2.44 16 39 H 0.04 2.11 8.11 -2.39 -0.02 2.09 16 40 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 41 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 42 H 0.10 3.22 8.10 -2.38 -0.02 3.20 16 43 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 Total: -1.00 -65.83 370.76 -0.14 -65.98 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.40 Total: 17.62 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: 5.46 Total: 24.92 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -6.06 Total: -97.68 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -1.97 Total: -52.73 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.90 kcal Total: -65.83 -0.14 -65.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270862036.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.454 kcal (2) G-P(sol) polarization free energy of solvation -65.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds