Wall clock time and date at job start Tue Mar 31 2020 20:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.49927 * 2 1 4 4 C 1.53042 * 109.52433 * 120.08182 * 2 1 3 5 5 C 1.53035 * 109.53844 * 58.60274 * 4 2 1 6 6 C 1.53192 * 109.31374 * 61.36591 * 5 4 2 7 7 N 1.46927 * 108.77778 * 305.36564 * 6 5 4 8 8 C 1.34769 * 120.63138 * 233.63365 * 7 6 5 9 9 O 1.21525 * 120.00351 * 184.32325 * 8 7 6 10 10 C 1.48078 * 120.00084 * 4.32219 * 8 7 6 11 11 C 1.39862 * 120.93080 * 311.29553 * 10 8 7 12 12 C 1.38090 * 119.01856 * 179.97438 * 11 10 8 13 13 N 1.31844 * 120.93557 * 0.02562 * 12 11 10 14 14 C 1.31752 * 122.07949 * 359.97438 * 13 12 11 15 15 C 1.38366 * 120.86798 * 359.73882 * 14 13 12 16 16 Cl 1.73595 * 120.51975 * 180.28674 * 15 14 13 17 17 C 1.46932 * 118.73792 * 53.60425 * 7 6 5 18 18 H 1.09002 * 109.69912 * 66.25147 * 17 7 6 19 19 C 1.52991 * 109.58796 * 186.60580 * 17 7 6 20 20 N 1.46496 * 109.47137 * 283.53269 * 19 17 7 21 21 C 1.36944 * 119.99652 * 185.39965 * 20 19 17 22 22 H 1.07999 * 120.00352 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99669 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00186 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99898 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47159 * 89.99912 * 25 23 21 27 27 H 1.48504 * 109.47036 * 210.00007 * 25 23 21 28 28 H 1.48504 * 109.46980 * 329.99866 * 25 23 21 29 29 H 1.09001 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47316 * 300.06314 * 1 2 3 31 31 H 1.09000 * 109.47145 * 60.06701 * 1 2 3 32 32 H 1.09007 * 109.46109 * 178.62364 * 4 2 1 33 33 H 1.09003 * 109.45974 * 298.57901 * 4 2 1 34 34 H 1.09003 * 109.49869 * 181.31663 * 5 4 2 35 35 H 1.09000 * 109.49685 * 301.41370 * 5 4 2 36 36 H 1.09003 * 109.58974 * 65.15254 * 6 5 4 37 37 H 1.09002 * 109.58435 * 185.43544 * 6 5 4 38 38 H 1.08001 * 120.49399 * 0.02562 * 11 10 8 39 39 H 1.07999 * 119.52886 * 180.02562 * 12 11 10 40 40 H 1.07994 * 119.56643 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47276 * 163.52466 * 19 17 7 42 42 H 1.09008 * 109.47275 * 43.53156 * 19 17 7 43 43 H 0.96994 * 120.00435 * 5.40101 * 20 19 17 44 44 H 0.97001 * 120.00038 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 1.5044 -2.1559 1.2658 6 6 2.0154 -2.9038 0.0304 7 7 1.6523 -2.1380 -1.1699 8 6 0.9747 -2.7219 -2.1780 9 8 0.7488 -2.1011 -3.1980 10 6 0.5056 -4.1198 -2.0428 11 6 1.3687 -5.1285 -1.6027 12 6 0.8894 -6.4186 -1.4906 13 7 -0.3616 -6.7055 -1.7921 14 6 -1.2088 -5.7872 -2.2103 15 6 -0.8154 -4.4676 -2.3462 16 17 -1.9412 -3.2637 -2.8909 17 6 2.0413 -0.7234 -1.2498 18 1 3.1273 -0.6433 -1.2999 19 6 1.4224 -0.0910 -2.4978 20 7 2.1748 -0.5111 -3.6825 21 6 1.8726 0.0183 -4.9088 22 1 1.0799 0.7458 -5.0025 23 6 2.5859 -0.3794 -6.0313 24 7 3.5522 -1.2656 -5.9171 25 14 2.1742 0.3432 -7.7040 26 1 2.9855 1.5667 -7.9279 27 1 2.4785 -0.6532 -8.7622 28 1 0.7311 0.6906 -7.7515 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8894 31 1 -0.3633 0.5128 -0.8906 32 1 3.1313 -0.7438 1.2348 33 1 1.6995 -0.1959 2.1389 34 1 1.8499 -2.6629 2.1667 35 1 0.4146 -2.1361 1.2542 36 1 3.0994 -3.0036 0.0860 37 1 1.5591 -3.8928 -0.0127 38 1 2.3948 -4.9016 -1.3534 39 1 1.5487 -7.2038 -1.1512 40 1 -2.2247 -6.0674 -2.4464 41 1 1.4582 0.9949 -2.4108 42 1 0.3855 -0.4138 -2.5926 43 1 2.8869 -1.1642 -3.5984 44 1 4.0509 -1.5432 -6.7014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271737875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:02 Heat of formation + Delta-G solvation = 53.843566 kcal Electronic energy + Delta-G solvation = -28715.920188 eV Core-core repulsion = 24889.365878 eV Total energy + Delta-G solvation = -3826.554310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.96286 -39.73308 -37.35964 -36.49805 -34.77393 -33.55434 -32.31881 -31.92850 -31.16868 -30.12042 -27.18288 -26.23569 -24.82904 -23.83499 -23.73371 -22.64641 -21.31513 -20.29062 -18.64460 -17.59496 -16.76807 -16.66220 -16.45512 -15.51975 -15.48313 -15.19684 -14.92348 -14.39815 -14.16276 -14.08137 -13.80011 -13.65882 -13.38185 -13.03659 -12.81468 -12.52951 -12.44905 -12.19687 -12.02662 -11.94596 -11.57305 -11.40596 -11.10018 -11.02749 -10.91878 -10.69580 -10.63679 -10.39338 -10.23739 -9.93540 -9.81304 -9.71085 -9.49671 -9.02522 -8.73302 -8.49165 -8.10908 -6.54637 -5.54402 -2.74382 0.71995 0.79988 2.06912 3.09213 3.17098 3.55081 3.60361 3.60778 3.62455 4.23395 4.41589 4.59827 4.68880 4.73477 4.76521 4.83824 4.88661 5.05424 5.07038 5.25514 5.36481 5.39846 5.47212 5.55508 5.68374 5.73562 5.76308 5.80062 5.81035 5.88031 5.91280 5.97922 6.11322 6.16803 6.27399 6.27797 6.46785 6.53269 6.65223 6.88536 7.25700 7.64185 7.75363 7.88800 8.63641 8.70088 9.75583 10.35790 10.70123 11.69644 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.009467 B = 0.005529 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.978934 B = 5062.571016 C = 6563.764405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.081 0.919 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.098 3.902 7 N -0.602 5.602 8 C 0.515 3.485 9 O -0.413 6.413 10 C -0.055 4.055 11 C -0.139 4.139 12 C 0.095 3.905 13 N -0.466 5.466 14 C 0.109 3.891 15 C -0.055 4.055 16 Cl -0.030 7.030 17 C 0.149 3.851 18 H 0.072 0.928 19 C 0.158 3.842 20 N -0.700 5.700 21 C -0.206 4.206 22 H 0.064 0.936 23 C -0.021 4.021 24 N -0.938 5.938 25 Si 0.900 3.100 26 H -0.294 1.294 27 H -0.295 1.295 28 H -0.285 1.285 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.149 0.851 39 H 0.165 0.835 40 H 0.167 0.833 41 H 0.015 0.985 42 H 0.046 0.954 43 H 0.379 0.621 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.937 -7.363 18.724 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.120 4.120 3 H 0.099 0.901 4 C -0.150 4.150 5 C -0.174 4.174 6 C -0.025 4.025 7 N -0.339 5.339 8 C 0.298 3.702 9 O -0.279 6.279 10 C -0.068 4.068 11 C -0.159 4.159 12 C -0.061 4.061 13 N -0.175 5.175 14 C -0.049 4.049 15 C -0.085 4.085 16 Cl 0.000 7.000 17 C 0.046 3.954 18 H 0.090 0.910 19 C 0.030 3.970 20 N -0.342 5.342 21 C -0.338 4.338 22 H 0.082 0.918 23 C -0.216 4.216 24 N -0.589 5.589 25 Si 0.733 3.267 26 H -0.222 1.222 27 H -0.221 1.221 28 H -0.211 1.211 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.167 0.833 39 H 0.183 0.817 40 H 0.184 0.816 41 H 0.033 0.967 42 H 0.063 0.937 43 H 0.212 0.788 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.551 -7.636 17.995 20.617 hybrid contribution 0.385 0.922 -1.049 1.448 sum -6.166 -6.714 16.947 19.243 Atomic orbital electron populations 1.21845 0.94899 1.01938 1.01474 1.21482 0.96672 0.99488 0.94319 0.90096 1.21535 1.00493 0.95341 0.97655 1.21956 1.01629 0.96394 0.97431 1.21964 1.00140 0.95608 0.84831 1.47697 1.57485 1.11109 1.17656 1.18045 0.82009 0.85374 0.84740 1.91303 1.50661 1.60058 1.25881 1.20681 0.92580 0.96828 0.96663 1.22451 1.01194 0.93175 0.99104 1.22797 0.92142 0.95231 0.95959 1.67651 1.03909 1.35671 1.10301 1.22748 1.00097 0.86473 0.95604 1.22186 0.91761 0.92569 1.01979 1.98426 1.59216 1.54839 1.87567 1.21546 0.98995 0.78936 0.95920 0.91034 1.20986 0.96712 0.94403 0.84849 1.42186 1.39571 1.50134 1.02324 1.19131 1.12579 1.16703 0.85345 0.91782 1.24594 0.99412 1.00189 0.97363 1.69650 1.25146 1.35805 1.28306 0.86263 0.77526 0.77903 0.85045 1.22184 1.22117 1.21080 0.92575 0.93337 0.92019 0.91819 0.91941 0.91232 0.91259 0.91468 0.89695 0.83300 0.81740 0.81599 0.96702 0.93705 0.78789 0.94089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.26 37.16 0.31 -1.50 16 2 C -0.10 -1.24 2.75 -90.50 -0.25 -1.49 16 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.11 -1.10 5.43 -26.69 -0.14 -1.24 16 5 C -0.14 -1.25 5.74 -26.61 -0.15 -1.40 16 6 C 0.10 1.05 5.37 -3.71 -0.02 1.03 16 7 N -0.60 -8.98 2.41 -166.24 -0.40 -9.38 16 8 C 0.52 9.21 6.59 -12.23 -0.08 9.13 16 9 O -0.41 -9.45 9.99 5.34 0.05 -9.40 16 10 C -0.06 -0.84 5.11 -104.62 -0.53 -1.37 16 11 C -0.14 -1.66 7.46 -39.03 -0.29 -1.95 16 12 C 0.09 1.01 11.17 -17.60 -0.20 0.82 16 13 N -0.47 -5.75 10.33 -13.27 -0.14 -5.88 16 14 C 0.11 1.36 10.99 -17.54 -0.19 1.16 16 15 C -0.06 -0.80 6.37 -38.90 -0.25 -1.05 16 16 Cl -0.03 -0.46 27.38 -51.86 -1.42 -1.88 16 17 C 0.15 2.39 2.60 -67.60 -0.18 2.22 16 18 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 19 C 0.16 3.30 3.84 -4.05 -0.02 3.29 16 20 N -0.70 -18.36 3.34 -59.91 -0.20 -18.56 16 21 C -0.21 -6.06 9.83 -15.06 -0.15 -6.20 16 22 H 0.06 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.02 -0.64 5.50 -17.43 -0.10 -0.74 16 24 N -0.94 -29.73 13.06 55.49 0.72 -29.01 16 25 Si 0.90 23.87 29.55 -169.99 -5.02 18.85 16 26 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 27 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 28 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 29 H 0.06 0.73 5.97 -51.93 -0.31 0.42 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.88 6.72 -51.93 -0.35 0.53 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.69 6.34 -51.93 -0.33 0.36 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.83 4.40 -51.93 -0.23 0.60 16 38 H 0.15 1.51 6.92 -52.49 -0.36 1.14 16 39 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.02 0.32 8.05 -51.93 -0.42 -0.09 16 42 H 0.05 1.02 5.26 -51.92 -0.27 0.74 16 43 H 0.38 10.62 7.49 -40.82 -0.31 10.31 16 44 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 354.79 15.07 5.35 5.35 Total: -1.00 -34.90 354.79 -9.22 -44.13 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.93 Total: 5.08 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -2.24 Total: 0.71 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: -0.01 Total: -62.83 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.05 Total: -9.40 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.02 Total: 18.85 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.42 Total: -1.88 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.90 -9.22 -44.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271737875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.970 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds