Wall clock time and date at job start Tue Mar 31 2020 20:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.49927 * 2 1 4 4 C 1.53042 * 109.52433 * 120.08182 * 2 1 3 5 5 C 1.53035 * 109.53844 * 58.60274 * 4 2 1 6 6 C 1.53192 * 109.31374 * 61.36591 * 5 4 2 7 7 N 1.46927 * 108.77778 * 305.36564 * 6 5 4 8 8 C 1.34769 * 120.63138 * 233.63365 * 7 6 5 9 9 O 1.21525 * 120.00351 * 184.32325 * 8 7 6 10 10 C 1.48078 * 120.00084 * 4.32219 * 8 7 6 11 11 C 1.39862 * 120.93080 * 311.29553 * 10 8 7 12 12 C 1.38090 * 119.01856 * 179.97438 * 11 10 8 13 13 N 1.31844 * 120.93557 * 0.02562 * 12 11 10 14 14 C 1.31752 * 122.07949 * 359.97438 * 13 12 11 15 15 C 1.38366 * 120.86798 * 359.73882 * 14 13 12 16 16 Cl 1.73595 * 120.51975 * 180.28674 * 15 14 13 17 17 C 1.46932 * 118.73792 * 53.60425 * 7 6 5 18 18 H 1.09002 * 109.69912 * 66.25147 * 17 7 6 19 19 C 1.52991 * 109.58796 * 186.60580 * 17 7 6 20 20 N 1.46496 * 109.47137 * 283.53269 * 19 17 7 21 21 C 1.36944 * 119.99652 * 185.39965 * 20 19 17 22 22 H 1.07999 * 120.00352 * 0.02562 * 21 20 19 23 23 C 1.38814 * 119.99669 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00186 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99898 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47159 * 89.99912 * 25 23 21 27 27 H 1.48504 * 109.47036 * 210.00007 * 25 23 21 28 28 H 1.48504 * 109.46980 * 329.99866 * 25 23 21 29 29 H 1.09001 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47316 * 300.06314 * 1 2 3 31 31 H 1.09000 * 109.47145 * 60.06701 * 1 2 3 32 32 H 1.09007 * 109.46109 * 178.62364 * 4 2 1 33 33 H 1.09003 * 109.45974 * 298.57901 * 4 2 1 34 34 H 1.09003 * 109.49869 * 181.31663 * 5 4 2 35 35 H 1.09000 * 109.49685 * 301.41370 * 5 4 2 36 36 H 1.09003 * 109.58974 * 65.15254 * 6 5 4 37 37 H 1.09002 * 109.58435 * 185.43544 * 6 5 4 38 38 H 1.08001 * 120.49399 * 0.02562 * 11 10 8 39 39 H 1.07999 * 119.52886 * 180.02562 * 12 11 10 40 40 H 1.07994 * 119.56643 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47276 * 163.52466 * 19 17 7 42 42 H 1.09008 * 109.47275 * 43.53156 * 19 17 7 43 43 H 0.96994 * 120.00435 * 5.40101 * 20 19 17 44 44 H 0.97001 * 120.00038 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 1.5044 -2.1559 1.2658 6 6 2.0154 -2.9038 0.0304 7 7 1.6523 -2.1380 -1.1699 8 6 0.9747 -2.7219 -2.1780 9 8 0.7488 -2.1011 -3.1980 10 6 0.5056 -4.1198 -2.0428 11 6 1.3687 -5.1285 -1.6027 12 6 0.8894 -6.4186 -1.4906 13 7 -0.3616 -6.7055 -1.7921 14 6 -1.2088 -5.7872 -2.2103 15 6 -0.8154 -4.4676 -2.3462 16 17 -1.9412 -3.2637 -2.8909 17 6 2.0413 -0.7234 -1.2498 18 1 3.1273 -0.6433 -1.2999 19 6 1.4224 -0.0910 -2.4978 20 7 2.1748 -0.5111 -3.6825 21 6 1.8726 0.0183 -4.9088 22 1 1.0799 0.7458 -5.0025 23 6 2.5859 -0.3794 -6.0313 24 7 3.5522 -1.2656 -5.9171 25 14 2.1742 0.3432 -7.7040 26 1 2.9855 1.5667 -7.9279 27 1 2.4785 -0.6532 -8.7622 28 1 0.7311 0.6906 -7.7515 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8894 31 1 -0.3633 0.5128 -0.8906 32 1 3.1313 -0.7438 1.2348 33 1 1.6995 -0.1959 2.1389 34 1 1.8499 -2.6629 2.1667 35 1 0.4146 -2.1361 1.2542 36 1 3.0994 -3.0036 0.0860 37 1 1.5591 -3.8928 -0.0127 38 1 2.3948 -4.9016 -1.3534 39 1 1.5487 -7.2038 -1.1512 40 1 -2.2247 -6.0674 -2.4464 41 1 1.4582 0.9949 -2.4108 42 1 0.3855 -0.4138 -2.5926 43 1 2.8869 -1.1642 -3.5984 44 1 4.0509 -1.5432 -6.7014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271737875.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:57 Heat of formation + Delta-G solvation = 31.357501 kcal Electronic energy + Delta-G solvation = -28716.895257 eV Core-core repulsion = 24889.365878 eV Total energy + Delta-G solvation = -3827.529379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.11999 -40.80818 -38.57369 -37.63412 -36.47432 -34.93175 -33.73735 -33.12028 -32.16168 -31.82347 -28.58774 -27.32396 -26.31316 -25.11263 -24.72901 -24.18622 -22.63582 -21.44116 -19.80268 -19.18896 -18.23991 -17.82609 -17.52480 -16.86043 -16.69941 -16.50182 -16.16924 -15.79220 -15.31516 -15.18093 -15.10059 -14.89582 -14.74344 -14.64407 -14.02781 -13.91700 -13.84408 -13.36336 -13.12304 -13.08067 -12.93879 -12.82005 -12.63516 -12.45418 -12.24344 -12.14626 -12.03417 -11.84124 -11.64007 -11.31202 -11.28473 -10.96607 -10.83232 -10.77269 -10.03179 -9.90374 -9.43385 -8.67560 -7.84618 -5.03202 -0.34619 -0.16403 0.97322 1.41521 1.44234 1.51942 1.84140 1.99830 2.57103 2.60779 3.31683 3.38226 3.49198 3.62947 3.73169 3.77749 3.82678 3.91505 4.10394 4.13252 4.25755 4.37270 4.42625 4.48893 4.54140 4.58089 4.65322 4.80291 4.81097 4.83468 4.89421 4.94996 5.01608 5.12287 5.23805 5.27434 5.31264 5.37456 5.38165 5.52728 5.55514 5.81729 6.37253 6.52109 6.69219 7.37802 7.44910 8.24850 8.47527 9.40153 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.009467 B = 0.005529 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.978934 B = 5062.571016 C = 6563.764405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 H 0.084 0.916 4 C -0.107 4.107 5 C -0.130 4.130 6 C 0.089 3.911 7 N -0.596 5.596 8 C 0.516 3.484 9 O -0.479 6.479 10 C -0.078 4.078 11 C -0.133 4.133 12 C 0.109 3.891 13 N -0.472 5.472 14 C 0.114 3.886 15 C -0.072 4.072 16 Cl -0.051 7.051 17 C 0.154 3.846 18 H 0.063 0.937 19 C 0.164 3.836 20 N -0.705 5.705 21 C -0.206 4.206 22 H 0.058 0.942 23 C -0.083 4.083 24 N -0.972 5.972 25 Si 0.962 3.038 26 H -0.285 1.285 27 H -0.298 1.298 28 H -0.280 1.280 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.169 0.831 39 H 0.208 0.792 40 H 0.187 0.813 41 H 0.008 0.992 42 H 0.030 0.970 43 H 0.367 0.633 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.570 -8.831 21.540 23.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.103 0.897 4 C -0.144 4.144 5 C -0.168 4.168 6 C -0.032 4.032 7 N -0.332 5.332 8 C 0.301 3.699 9 O -0.351 6.351 10 C -0.090 4.090 11 C -0.154 4.154 12 C -0.047 4.047 13 N -0.181 5.181 14 C -0.044 4.044 15 C -0.102 4.102 16 Cl -0.022 7.022 17 C 0.051 3.949 18 H 0.081 0.919 19 C 0.037 3.963 20 N -0.345 5.345 21 C -0.339 4.339 22 H 0.076 0.924 23 C -0.274 4.274 24 N -0.625 5.625 25 Si 0.792 3.208 26 H -0.213 1.213 27 H -0.225 1.225 28 H -0.206 1.206 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.187 0.813 39 H 0.225 0.775 40 H 0.204 0.796 41 H 0.026 0.974 42 H 0.047 0.953 43 H 0.198 0.802 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.205 -9.096 20.896 23.620 hybrid contribution 0.234 1.282 -1.779 2.205 sum -5.971 -7.814 19.117 21.499 Atomic orbital electron populations 1.21781 0.95017 1.01404 1.01340 1.21468 0.96435 0.99644 0.93843 0.89725 1.21525 1.00938 0.95491 0.96480 1.21947 1.01169 0.96039 0.97645 1.22326 1.01357 0.95934 0.83565 1.47818 1.56140 1.10822 1.18401 1.18546 0.80849 0.86257 0.84272 1.91268 1.53613 1.61886 1.28305 1.20624 0.93574 0.96029 0.98817 1.22696 1.01539 0.92910 0.98212 1.23472 0.91899 0.95546 0.93764 1.67782 1.04641 1.35336 1.10386 1.23052 1.01154 0.85462 0.94714 1.22347 0.91551 0.92999 1.03263 1.98413 1.59889 1.55899 1.87988 1.21377 0.98074 0.80090 0.95364 0.91908 1.20973 0.95806 0.94051 0.85454 1.42236 1.39674 1.49724 1.02896 1.19418 1.11587 1.15876 0.86984 0.92370 1.25297 1.00049 1.01401 1.00633 1.69801 1.26480 1.37625 1.28640 0.85285 0.77429 0.77190 0.80851 1.21256 1.22508 1.20601 0.93311 0.90803 0.94752 0.91034 0.89732 0.87969 0.91976 0.89809 0.88440 0.81346 0.77519 0.79580 0.97435 0.95254 0.80182 0.94740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.26 71.98 0.59 -2.77 16 2 C -0.09 -2.22 2.75 -10.71 -0.03 -2.25 16 3 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 4 C -0.11 -1.71 5.43 30.62 0.17 -1.55 16 5 C -0.13 -1.91 5.74 30.67 0.18 -1.73 16 6 C 0.09 1.67 5.37 86.36 0.46 2.14 16 7 N -0.60 -17.53 2.41 -798.14 -1.93 -19.45 16 8 C 0.52 18.84 6.59 86.86 0.57 19.41 16 9 O -0.48 -23.10 9.99 -3.79 -0.04 -23.14 16 10 C -0.08 -2.34 5.11 -19.86 -0.10 -2.44 16 11 C -0.13 -2.86 7.46 22.63 0.17 -2.69 16 12 C 0.11 1.94 11.17 84.66 0.95 2.89 16 13 N -0.47 -10.33 10.33 -195.91 -2.02 -12.35 16 14 C 0.11 2.67 10.99 84.74 0.93 3.60 16 15 C -0.07 -2.08 6.37 22.71 0.14 -1.94 16 16 Cl -0.05 -1.65 27.38 -2.72 -0.07 -1.72 16 17 C 0.15 5.00 2.60 44.97 0.12 5.11 16 18 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 19 C 0.16 7.18 3.84 86.38 0.33 7.51 16 20 N -0.70 -38.70 3.34 -343.46 -1.15 -39.85 16 21 C -0.21 -12.60 9.83 84.03 0.83 -11.77 16 22 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 23 C -0.08 -5.17 5.50 84.86 0.47 -4.71 16 24 N -0.97 -63.58 13.06 21.65 0.28 -63.29 16 25 Si 0.96 50.58 29.55 68.60 2.03 52.61 16 26 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 27 H -0.30 -15.73 7.11 99.48 0.71 -15.03 16 28 H -0.28 -14.34 7.11 99.48 0.71 -13.63 16 29 H 0.05 1.25 5.97 -2.39 -0.01 1.24 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.03 1.01 6.72 -2.39 -0.02 0.99 16 32 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 1.04 6.34 -2.39 -0.02 1.03 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.60 4.40 -2.39 -0.01 1.59 16 38 H 0.17 2.88 6.92 -2.91 -0.02 2.86 16 39 H 0.21 1.88 8.06 -2.91 -0.02 1.85 16 40 H 0.19 3.43 8.06 -2.91 -0.02 3.41 16 41 H 0.01 0.35 8.05 -2.39 -0.02 0.33 16 42 H 0.03 1.43 5.26 -2.38 -0.01 1.41 16 43 H 0.37 21.50 7.49 -92.71 -0.69 20.81 16 44 H 0.24 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -80.42 354.79 3.22 -77.20 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.34 Total: 21.18 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 5.77 Total: 8.82 kcal Atomic # 7 Polarization: -130.14 SS G_CDS: -4.81 Total: -134.95 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.04 Total: -23.14 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.03 Total: 52.61 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.07 Total: -1.72 kcal Total: -80.42 3.22 -77.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271737875.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.559 kcal (2) G-P(sol) polarization free energy of solvation -80.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds