Wall clock time and date at job start Tue Mar 31 2020 20:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49598 * 2 1 4 4 C 1.53042 * 109.52100 * 239.92632 * 2 1 3 5 5 C 1.53040 * 109.54114 * 178.66703 * 4 2 1 6 6 C 1.53192 * 109.31085 * 61.36182 * 5 4 2 7 7 N 1.47205 * 108.85572 * 305.35047 * 6 5 4 8 8 C 1.34777 * 120.81606 * 233.66411 * 7 6 5 9 9 O 1.21527 * 120.00334 * 183.50193 * 8 7 6 10 10 C 1.48068 * 119.99796 * 3.50240 * 8 7 6 11 11 C 1.39861 * 120.93703 * 324.52101 * 10 8 7 12 12 C 1.38086 * 119.02395 * 179.75570 * 11 10 8 13 13 N 1.31847 * 120.93526 * 0.52965 * 12 11 10 14 14 C 1.31750 * 122.07428 * 359.74178 * 13 12 11 15 15 C 1.38356 * 120.87222 * 359.97438 * 14 13 12 16 16 Cl 1.73600 * 120.52070 * 180.02562 * 15 14 13 17 17 C 1.46932 * 118.55522 * 53.52157 * 7 6 5 18 18 H 1.08998 * 109.58170 * 66.32291 * 17 7 6 19 19 C 1.52999 * 109.58747 * 186.60149 * 17 7 6 20 20 N 1.46506 * 109.47193 * 286.91259 * 19 17 7 21 21 C 1.36933 * 120.00115 * 185.31981 * 20 19 17 22 22 H 1.08008 * 119.99589 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00037 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00132 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99811 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47430 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47235 * 119.99863 * 25 23 21 28 28 H 1.48504 * 109.46888 * 239.99965 * 25 23 21 29 29 H 1.09005 * 109.47011 * 299.93159 * 1 2 3 30 30 H 1.08998 * 109.47284 * 59.92570 * 1 2 3 31 31 H 1.09001 * 109.47516 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.45610 * 298.68723 * 4 2 1 33 33 H 1.09006 * 109.46206 * 58.64378 * 4 2 1 34 34 H 1.08998 * 109.49981 * 181.31522 * 5 4 2 35 35 H 1.08998 * 109.49532 * 301.38384 * 5 4 2 36 36 H 1.08998 * 109.59038 * 65.15659 * 6 5 4 37 37 H 1.09000 * 109.59039 * 185.44069 * 6 5 4 38 38 H 1.08008 * 120.48531 * 0.02562 * 11 10 8 39 39 H 1.08003 * 119.53296 * 180.24707 * 12 11 10 40 40 H 1.08001 * 119.56492 * 179.97438 * 14 13 12 41 41 H 1.08996 * 109.46913 * 46.90862 * 19 17 7 42 42 H 1.08992 * 109.46986 * 166.91175 * 19 17 7 43 43 H 0.97005 * 119.99880 * 5.31592 * 20 19 17 44 44 H 0.96998 * 119.99554 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7228 -1.2483 5 6 3.5714 -0.6941 -1.2657 6 6 4.1059 -1.4256 -0.0303 7 7 3.5049 -0.8282 1.1734 8 6 4.2786 -0.3836 2.1834 9 8 3.7658 0.0486 3.1969 10 6 5.7535 -0.4216 2.0582 11 6 6.3909 -1.4658 1.3804 12 6 7.7683 -1.4592 1.2829 13 7 8.4816 -0.4927 1.8265 14 6 7.9234 0.5069 2.4784 15 6 6.5492 0.5833 2.6196 16 17 5.8234 1.9050 3.4799 17 6 2.0413 -0.7235 1.2496 18 1 1.6057 -1.7215 1.2980 19 6 1.6480 0.0688 2.4980 20 7 1.8668 -0.7560 3.6889 21 6 1.4822 -0.2965 4.9202 22 1 1.0178 0.6742 5.0133 23 6 1.6890 -1.0782 6.0484 24 7 2.2543 -2.2614 5.9348 25 14 1.1648 -0.4510 7.7281 26 1 0.5589 0.8973 7.5861 27 1 0.1687 -1.3825 8.3157 28 1 2.3509 -0.3689 8.6180 29 1 -0.3633 0.5128 0.8906 30 1 -0.3634 0.5150 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6977 -1.7572 -1.2353 33 1 1.6587 -0.2244 -2.1390 34 1 3.9344 -1.1886 -2.1667 35 1 3.9160 0.3399 -1.2542 36 1 3.8387 -2.4808 -0.0863 37 1 5.1904 -1.3251 0.0132 38 1 5.8139 -2.2634 0.9359 39 1 8.2687 -2.2594 0.7579 40 1 8.5469 1.2770 2.9083 41 1 2.2576 0.9700 2.5633 42 1 0.5957 0.3456 2.4361 43 1 2.2841 -1.6277 3.6052 44 1 2.3991 -2.8074 6.7233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271737876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:06 Heat of formation + Delta-G solvation = 66.755602 kcal Electronic energy + Delta-G solvation = -28530.900153 eV Core-core repulsion = 24704.905751 eV Total energy + Delta-G solvation = -3825.994402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.91014 -39.58569 -37.26884 -36.36036 -34.94575 -33.63828 -32.30766 -32.04946 -31.12020 -30.21038 -27.17562 -26.23869 -24.77602 -23.73302 -23.49911 -22.38837 -21.08265 -20.40368 -19.41936 -17.51462 -16.69768 -16.68275 -16.54046 -15.50557 -15.35747 -14.95046 -14.74060 -14.65904 -14.18841 -13.99527 -13.73865 -13.51627 -13.37034 -12.88501 -12.79144 -12.58755 -12.31592 -12.16944 -11.99558 -11.83474 -11.68447 -11.45128 -11.01441 -10.97109 -10.87302 -10.71390 -10.64125 -10.59428 -10.15640 -9.85835 -9.78629 -9.60361 -9.50918 -8.93822 -8.70293 -8.45053 -8.09915 -6.52254 -5.56095 -2.73797 0.73886 0.83287 2.19125 3.16886 3.20917 3.54496 3.59931 3.61839 3.73308 4.27570 4.46637 4.61310 4.70895 4.73879 4.75456 4.86026 4.87814 5.01885 5.11527 5.27602 5.38679 5.40611 5.52885 5.59201 5.68912 5.71284 5.73895 5.79354 5.79939 5.87524 5.89043 5.98290 6.08151 6.14569 6.29329 6.32025 6.41674 6.56967 6.63565 6.90776 7.22903 7.68882 7.80388 7.87528 8.61875 8.76903 9.73738 10.33457 10.67766 11.67746 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.008654 B = 0.005953 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3234.667959 B = 4702.183451 C = 6838.107801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.134 4.134 6 C 0.082 3.918 7 N -0.607 5.607 8 C 0.504 3.496 9 O -0.405 6.405 10 C -0.057 4.057 11 C -0.150 4.150 12 C 0.092 3.908 13 N -0.466 5.466 14 C 0.107 3.893 15 C -0.051 4.051 16 Cl -0.023 7.023 17 C 0.150 3.850 18 H 0.071 0.929 19 C 0.158 3.842 20 N -0.692 5.692 21 C -0.204 4.204 22 H 0.065 0.935 23 C -0.021 4.021 24 N -0.935 5.935 25 Si 0.899 3.101 26 H -0.283 1.283 27 H -0.295 1.295 28 H -0.295 1.295 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.037 0.963 42 H 0.023 0.977 43 H 0.379 0.621 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.549 2.628 -18.478 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.172 4.172 6 C -0.041 4.041 7 N -0.344 5.344 8 C 0.287 3.713 9 O -0.271 6.271 10 C -0.070 4.070 11 C -0.171 4.171 12 C -0.065 4.065 13 N -0.176 5.176 14 C -0.051 4.051 15 C -0.081 4.081 16 Cl 0.007 6.993 17 C 0.047 3.953 18 H 0.089 0.911 19 C 0.030 3.970 20 N -0.334 5.334 21 C -0.336 4.336 22 H 0.083 0.917 23 C -0.215 4.215 24 N -0.586 5.586 25 Si 0.732 3.268 26 H -0.208 1.208 27 H -0.223 1.223 28 H -0.223 1.223 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.175 0.825 39 H 0.181 0.819 40 H 0.184 0.816 41 H 0.054 0.946 42 H 0.041 0.959 43 H 0.213 0.787 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.995 3.104 -17.709 19.676 hybrid contribution -0.922 -0.036 1.033 1.385 sum 7.073 3.068 -16.675 18.371 Atomic orbital electron populations 1.21847 0.94367 1.02154 1.02018 1.21468 0.96081 0.99958 0.94367 0.90950 1.21579 0.94991 1.00869 0.97612 1.21917 0.96464 1.01259 0.97561 1.22472 0.99709 0.97094 0.84841 1.47747 1.06248 1.62723 1.17718 1.18042 0.84833 0.83790 0.84626 1.91351 1.70739 1.38745 1.26286 1.20649 0.96169 0.94069 0.96071 1.22718 0.96227 0.99169 0.98945 1.22793 0.90684 0.96415 0.96573 1.67634 1.40258 1.01737 1.07953 1.22747 0.90086 0.96593 0.95705 1.22218 0.94164 0.93095 0.98648 1.98438 1.83003 1.43786 1.74106 1.21531 0.78271 0.99731 0.95776 0.91141 1.20965 0.96447 0.94686 0.84882 1.42251 1.71001 1.18659 1.01528 1.19183 1.29595 1.00029 0.84789 0.91696 1.24597 1.02607 0.97008 0.97326 1.69663 1.49968 1.11074 1.27894 0.86195 0.77526 0.77624 0.85435 1.20825 1.22307 1.22252 0.91527 0.92895 0.92547 0.91800 0.91976 0.91100 0.91706 0.91451 0.88215 0.82451 0.81850 0.81644 0.94564 0.95949 0.78685 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.99 37.16 0.33 -1.38 16 2 C -0.10 -1.24 2.34 -90.50 -0.21 -1.45 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.11 -1.12 5.17 -26.69 -0.14 -1.25 16 5 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 6 C 0.08 0.88 5.07 -3.56 -0.02 0.86 16 7 N -0.61 -9.30 2.98 -166.02 -0.50 -9.79 16 8 C 0.50 9.26 6.85 -12.23 -0.08 9.18 16 9 O -0.41 -9.37 8.95 5.34 0.05 -9.32 16 10 C -0.06 -0.90 5.51 -104.62 -0.58 -1.47 16 11 C -0.15 -1.81 7.54 -39.03 -0.29 -2.10 16 12 C 0.09 1.00 11.17 -17.60 -0.20 0.80 16 13 N -0.47 -5.95 10.33 -13.27 -0.14 -6.09 16 14 C 0.11 1.40 10.99 -17.54 -0.19 1.21 16 15 C -0.05 -0.79 6.36 -38.90 -0.25 -1.04 16 16 Cl -0.02 -0.38 26.88 -51.86 -1.39 -1.77 16 17 C 0.15 2.43 2.36 -67.60 -0.16 2.27 16 18 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 19 C 0.16 3.30 4.84 -4.04 -0.02 3.28 16 20 N -0.69 -18.05 3.22 -59.91 -0.19 -18.24 16 21 C -0.20 -5.96 9.74 -15.06 -0.15 -6.11 16 22 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 23 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 24 N -0.94 -29.55 13.06 55.49 0.72 -28.82 16 25 Si 0.90 23.78 29.55 -169.99 -5.02 18.76 16 26 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 28 H -0.29 -7.92 7.11 56.52 0.40 -7.51 16 29 H 0.07 0.88 6.36 -51.93 -0.33 0.55 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.97 3.60 -51.93 -0.19 0.78 16 38 H 0.16 1.54 5.62 -52.48 -0.29 1.24 16 39 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.17 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.04 0.84 6.31 -51.93 -0.33 0.51 16 42 H 0.02 0.47 6.13 -51.93 -0.32 0.15 16 43 H 0.38 10.62 7.25 -40.82 -0.30 10.32 16 44 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -34.76 355.60 -9.27 -44.03 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.95 Total: 5.22 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: -2.21 Total: 0.67 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -0.10 Total: -62.95 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.05 Total: -9.32 kcal Atomic # 14 Polarization: 23.78 SS G_CDS: -5.02 Total: 18.76 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.39 Total: -1.77 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.76 -9.27 -44.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271737876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.787 kcal (2) G-P(sol) polarization free energy of solvation -34.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds