Wall clock time and date at job start Tue Mar 31 2020 20:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49598 * 2 1 4 4 C 1.53042 * 109.52100 * 239.92632 * 2 1 3 5 5 C 1.53040 * 109.54114 * 178.66703 * 4 2 1 6 6 C 1.53192 * 109.31085 * 61.36182 * 5 4 2 7 7 N 1.47205 * 108.85572 * 305.35047 * 6 5 4 8 8 C 1.34777 * 120.81606 * 233.66411 * 7 6 5 9 9 O 1.21527 * 120.00334 * 183.50193 * 8 7 6 10 10 C 1.48068 * 119.99796 * 3.50240 * 8 7 6 11 11 C 1.39861 * 120.93703 * 324.52101 * 10 8 7 12 12 C 1.38086 * 119.02395 * 179.75570 * 11 10 8 13 13 N 1.31847 * 120.93526 * 0.52965 * 12 11 10 14 14 C 1.31750 * 122.07428 * 359.74178 * 13 12 11 15 15 C 1.38356 * 120.87222 * 359.97438 * 14 13 12 16 16 Cl 1.73600 * 120.52070 * 180.02562 * 15 14 13 17 17 C 1.46932 * 118.55522 * 53.52157 * 7 6 5 18 18 H 1.08998 * 109.58170 * 66.32291 * 17 7 6 19 19 C 1.52999 * 109.58747 * 186.60149 * 17 7 6 20 20 N 1.46506 * 109.47193 * 286.91259 * 19 17 7 21 21 C 1.36933 * 120.00115 * 185.31981 * 20 19 17 22 22 H 1.08008 * 119.99589 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00037 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00132 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99811 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47430 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47235 * 119.99863 * 25 23 21 28 28 H 1.48504 * 109.46888 * 239.99965 * 25 23 21 29 29 H 1.09005 * 109.47011 * 299.93159 * 1 2 3 30 30 H 1.08998 * 109.47284 * 59.92570 * 1 2 3 31 31 H 1.09001 * 109.47516 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.45610 * 298.68723 * 4 2 1 33 33 H 1.09006 * 109.46206 * 58.64378 * 4 2 1 34 34 H 1.08998 * 109.49981 * 181.31522 * 5 4 2 35 35 H 1.08998 * 109.49532 * 301.38384 * 5 4 2 36 36 H 1.08998 * 109.59038 * 65.15659 * 6 5 4 37 37 H 1.09000 * 109.59039 * 185.44069 * 6 5 4 38 38 H 1.08008 * 120.48531 * 0.02562 * 11 10 8 39 39 H 1.08003 * 119.53296 * 180.24707 * 12 11 10 40 40 H 1.08001 * 119.56492 * 179.97438 * 14 13 12 41 41 H 1.08996 * 109.46913 * 46.90862 * 19 17 7 42 42 H 1.08992 * 109.46986 * 166.91175 * 19 17 7 43 43 H 0.97005 * 119.99880 * 5.31592 * 20 19 17 44 44 H 0.96998 * 119.99554 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7228 -1.2483 5 6 3.5714 -0.6941 -1.2657 6 6 4.1059 -1.4256 -0.0303 7 7 3.5049 -0.8282 1.1734 8 6 4.2786 -0.3836 2.1834 9 8 3.7658 0.0486 3.1969 10 6 5.7535 -0.4216 2.0582 11 6 6.3909 -1.4658 1.3804 12 6 7.7683 -1.4592 1.2829 13 7 8.4816 -0.4927 1.8265 14 6 7.9234 0.5069 2.4784 15 6 6.5492 0.5833 2.6196 16 17 5.8234 1.9050 3.4799 17 6 2.0413 -0.7235 1.2496 18 1 1.6057 -1.7215 1.2980 19 6 1.6480 0.0688 2.4980 20 7 1.8668 -0.7560 3.6889 21 6 1.4822 -0.2965 4.9202 22 1 1.0178 0.6742 5.0133 23 6 1.6890 -1.0782 6.0484 24 7 2.2543 -2.2614 5.9348 25 14 1.1648 -0.4510 7.7281 26 1 0.5589 0.8973 7.5861 27 1 0.1687 -1.3825 8.3157 28 1 2.3509 -0.3689 8.6180 29 1 -0.3633 0.5128 0.8906 30 1 -0.3634 0.5150 -0.8893 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6977 -1.7572 -1.2353 33 1 1.6587 -0.2244 -2.1390 34 1 3.9344 -1.1886 -2.1667 35 1 3.9160 0.3399 -1.2542 36 1 3.8387 -2.4808 -0.0863 37 1 5.1904 -1.3251 0.0132 38 1 5.8139 -2.2634 0.9359 39 1 8.2687 -2.2594 0.7579 40 1 8.5469 1.2770 2.9083 41 1 2.2576 0.9700 2.5633 42 1 0.5957 0.3456 2.4361 43 1 2.2841 -1.6277 3.6052 44 1 2.3991 -2.8074 6.7233 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271737876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:05 Heat of formation + Delta-G solvation = 43.908327 kcal Electronic energy + Delta-G solvation = -28531.890885 eV Core-core repulsion = 24704.905751 eV Total energy + Delta-G solvation = -3826.985135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.08844 -40.71697 -38.49535 -37.57350 -36.54533 -35.10604 -33.70964 -33.22037 -32.17862 -31.91595 -28.61982 -27.27656 -26.28232 -25.08883 -24.61805 -23.87450 -22.29667 -21.50717 -20.60971 -19.20908 -18.24999 -17.79411 -17.63179 -16.78117 -16.61418 -16.48242 -16.09057 -15.69027 -15.50205 -15.22693 -15.15251 -14.77349 -14.70889 -14.39185 -14.05918 -13.81568 -13.61044 -13.40775 -13.12127 -13.02667 -12.96243 -12.85224 -12.80379 -12.45653 -12.18530 -12.08869 -11.93487 -11.83368 -11.61419 -11.54681 -11.13889 -10.93569 -10.84008 -10.71909 -10.01201 -9.84381 -9.44194 -8.62487 -7.83858 -5.01079 -0.37649 -0.16669 1.02584 1.41041 1.43485 1.52048 1.92280 2.01511 2.60014 2.62834 3.33011 3.39306 3.50254 3.62258 3.73748 3.76234 3.81063 3.92512 4.08331 4.16374 4.28388 4.32729 4.42371 4.47769 4.55607 4.59799 4.63085 4.80123 4.82048 4.82849 4.87284 4.96342 5.04364 5.12453 5.23742 5.29062 5.30331 5.38163 5.42402 5.51959 5.55122 5.80064 6.37570 6.53985 6.69662 7.40717 7.46151 8.24898 8.47759 9.41052 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.008654 B = 0.005953 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3234.667959 B = 4702.183451 C = 6838.107801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.062 0.938 4 C -0.108 4.108 5 C -0.128 4.128 6 C 0.072 3.928 7 N -0.603 5.603 8 C 0.504 3.496 9 O -0.469 6.469 10 C -0.082 4.082 11 C -0.141 4.141 12 C 0.107 3.893 13 N -0.472 5.472 14 C 0.110 3.890 15 C -0.071 4.071 16 Cl -0.049 7.049 17 C 0.156 3.844 18 H 0.063 0.937 19 C 0.163 3.837 20 N -0.699 5.699 21 C -0.201 4.201 22 H 0.058 0.942 23 C -0.083 4.083 24 N -0.971 5.971 25 Si 0.959 3.041 26 H -0.273 1.273 27 H -0.291 1.291 28 H -0.302 1.302 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.185 0.815 39 H 0.211 0.789 40 H 0.185 0.815 41 H 0.015 0.985 42 H 0.021 0.979 43 H 0.367 0.633 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.848 1.579 -21.805 23.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.080 0.920 4 C -0.146 4.146 5 C -0.166 4.166 6 C -0.048 4.048 7 N -0.339 5.339 8 C 0.289 3.711 9 O -0.339 6.339 10 C -0.094 4.094 11 C -0.160 4.160 12 C -0.049 4.049 13 N -0.181 5.181 14 C -0.047 4.047 15 C -0.101 4.101 16 Cl -0.021 7.021 17 C 0.053 3.947 18 H 0.081 0.919 19 C 0.037 3.963 20 N -0.339 5.339 21 C -0.334 4.334 22 H 0.076 0.924 23 C -0.274 4.274 24 N -0.625 5.625 25 Si 0.791 3.209 26 H -0.198 1.198 27 H -0.219 1.219 28 H -0.230 1.230 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.202 0.798 39 H 0.228 0.772 40 H 0.202 0.798 41 H 0.032 0.968 42 H 0.038 0.962 43 H 0.199 0.801 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 9.293 2.083 -21.120 23.168 hybrid contribution -1.184 0.295 1.860 2.224 sum 8.109 2.378 -19.260 21.032 Atomic orbital electron populations 1.21828 0.93772 1.02409 1.02128 1.21418 0.96535 0.99224 0.93925 0.91992 1.21575 0.95501 1.01058 0.96418 1.21910 0.95840 1.00954 0.97865 1.22861 1.00506 0.98024 0.83457 1.47929 1.05771 1.61708 1.18514 1.18605 0.86282 0.81934 0.84323 1.91326 1.72104 1.42007 1.28512 1.20636 0.94681 0.95931 0.98179 1.23022 0.97036 0.98324 0.97644 1.23553 0.90177 0.96333 0.94868 1.67770 1.40406 1.01956 1.07967 1.23022 0.89166 0.97201 0.95307 1.22415 0.95100 0.92963 0.99587 1.98422 1.83573 1.45134 1.74928 1.21382 0.79265 0.98833 0.95245 0.91917 1.20945 0.95704 0.94123 0.85539 1.42256 1.71094 1.18528 1.02024 1.19438 1.28182 0.99380 0.86429 0.92359 1.25266 1.04011 0.97597 1.00483 1.69810 1.52321 1.12263 1.28107 0.85240 0.76795 0.77524 0.81385 1.19770 1.21887 1.22977 0.93826 0.90351 0.92198 0.90992 0.89784 0.87561 0.92551 0.89588 0.86779 0.79841 0.77218 0.79788 0.96779 0.96191 0.80131 0.94829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.99 71.98 0.65 -2.56 16 2 C -0.09 -2.17 2.34 -10.72 -0.03 -2.20 16 3 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.11 -1.74 5.17 30.62 0.16 -1.58 16 5 C -0.13 -1.84 6.08 30.67 0.19 -1.66 16 6 C 0.07 1.33 5.07 86.31 0.44 1.77 16 7 N -0.60 -18.12 2.98 -797.45 -2.38 -20.50 16 8 C 0.50 18.90 6.85 86.85 0.59 19.49 16 9 O -0.47 -22.84 8.95 -3.80 -0.03 -22.88 16 10 C -0.08 -2.53 5.51 -19.87 -0.11 -2.64 16 11 C -0.14 -2.94 7.54 22.63 0.17 -2.77 16 12 C 0.11 1.88 11.17 84.65 0.95 2.83 16 13 N -0.47 -10.61 10.33 -195.91 -2.02 -12.64 16 14 C 0.11 2.74 10.99 84.73 0.93 3.67 16 15 C -0.07 -2.18 6.36 22.71 0.14 -2.04 16 16 Cl -0.05 -1.76 26.88 -2.72 -0.07 -1.83 16 17 C 0.16 5.08 2.36 44.97 0.11 5.19 16 18 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 19 C 0.16 7.18 4.84 86.38 0.42 7.60 16 20 N -0.70 -38.26 3.22 -343.45 -1.11 -39.36 16 21 C -0.20 -12.29 9.74 84.03 0.82 -11.47 16 22 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 23 C -0.08 -5.16 5.50 84.86 0.47 -4.69 16 24 N -0.97 -63.67 13.06 21.65 0.28 -63.39 16 25 Si 0.96 50.70 29.55 68.60 2.03 52.72 16 26 H -0.27 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 28 H -0.30 -16.13 7.11 99.48 0.71 -15.42 16 29 H 0.04 1.16 6.36 -2.38 -0.02 1.15 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.11 1.77 3.60 -2.39 -0.01 1.76 16 38 H 0.18 2.82 5.62 -2.91 -0.02 2.80 16 39 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.19 3.70 8.06 -2.91 -0.02 3.68 16 41 H 0.01 0.71 6.31 -2.39 -0.02 0.69 16 42 H 0.02 0.89 6.13 -2.39 -0.01 0.88 16 43 H 0.37 21.54 7.25 -92.70 -0.67 20.87 16 44 H 0.24 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -81.35 355.60 2.95 -78.40 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.36 Total: 20.55 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 5.89 Total: 8.93 kcal Atomic # 7 Polarization: -130.67 SS G_CDS: -5.23 Total: -135.90 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.03 Total: -22.88 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.03 Total: 52.72 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.07 Total: -1.83 kcal Total: -81.35 2.95 -78.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271737876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.310 kcal (2) G-P(sol) polarization free energy of solvation -81.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds