Wall clock time and date at job start Tue Mar 31 2020 20:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.80232 * 2 1 4 4 C 1.54943 * 110.73803 * 236.70759 * 2 1 3 5 5 N 1.48121 * 103.25544 * 279.03943 * 4 2 1 6 6 C 1.34769 * 127.03498 * 140.67379 * 5 4 2 7 7 O 1.21283 * 120.00252 * 180.02562 * 6 5 4 8 8 C 1.50708 * 120.00062 * 0.04512 * 6 5 4 9 9 C 1.52999 * 109.47367 * 180.02562 * 8 6 5 10 10 F 1.39899 * 109.47365 * 59.99704 * 9 8 6 11 11 F 1.39891 * 109.47212 * 180.02562 * 9 8 6 12 12 F 1.39907 * 109.46615 * 299.99745 * 9 8 6 13 13 C 1.47493 * 105.93006 * 320.71034 * 5 4 2 14 14 C 1.53999 * 107.08454 * 25.44499 * 13 5 4 15 15 H 1.08994 * 110.32692 * 239.69764 * 14 13 5 16 16 N 1.46912 * 110.32440 * 117.58468 * 14 13 5 17 17 C 1.46896 * 110.99636 * 86.45233 * 16 14 13 18 18 C 1.50703 * 109.46774 * 179.97438 * 17 16 14 19 19 O 1.21292 * 119.99840 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99773 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00039 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99610 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00384 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99833 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00108 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47261 * 60.00199 * 25 23 21 28 28 H 1.48500 * 109.47454 * 300.00192 * 25 23 21 29 29 H 1.09006 * 109.47288 * 296.71300 * 1 2 3 30 30 H 1.09002 * 109.46798 * 56.70701 * 1 2 3 31 31 H 1.08997 * 109.47630 * 176.70817 * 1 2 3 32 32 H 1.08999 * 110.66093 * 160.60017 * 4 2 1 33 33 H 1.08996 * 110.66570 * 37.48520 * 4 2 1 34 34 H 1.09002 * 109.46568 * 300.00203 * 8 6 5 35 35 H 1.09002 * 109.46665 * 59.99649 * 8 6 5 36 36 H 1.09000 * 109.91274 * 266.07846 * 13 5 4 37 37 H 1.09005 * 110.06964 * 144.89439 * 13 5 4 38 38 H 1.00901 * 110.99811 * 322.50097 * 16 14 13 39 39 H 1.09001 * 109.47275 * 60.00237 * 17 16 14 40 40 H 1.08996 * 109.47530 * 299.99593 * 17 16 14 41 41 H 0.96992 * 120.00503 * 359.97438 * 20 18 17 42 42 H 0.96993 * 119.99996 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0786 -0.7954 -1.2112 5 7 1.9870 -2.2039 -0.7622 6 6 1.6220 -3.2696 -1.5020 7 8 1.5906 -4.3737 -1.0009 8 6 1.2533 -3.0896 -2.9521 9 6 0.8805 -4.4452 -3.5557 10 9 -0.2087 -4.9815 -2.8607 11 9 0.5388 -4.2781 -4.9019 12 9 1.9714 -5.3156 -3.4565 13 6 2.3762 -2.2014 0.6605 14 6 2.0775 -0.7936 1.2087 15 1 2.9906 -0.3321 1.5845 16 7 1.0671 -0.8642 2.2728 17 6 1.6925 -1.1261 3.5759 18 6 0.6275 -1.1909 4.6402 19 8 -0.5378 -1.0339 4.3424 20 7 0.9700 -1.4224 5.9230 21 6 0.0011 -1.4808 6.8914 22 1 -1.0365 -1.3418 6.6261 23 6 0.3541 -1.7199 8.2138 24 7 1.6166 -1.8896 8.5365 25 14 -0.9659 -1.7989 9.5332 26 1 -0.3337 -2.0632 10.8507 27 1 -1.9205 -2.8906 9.2137 28 1 -1.6928 -0.5050 9.5843 29 1 -0.3634 0.4620 0.9180 30 1 -0.3633 0.5641 -0.8590 31 1 -0.3634 -1.0259 -0.0590 32 1 3.1145 -0.5227 -1.4131 33 1 1.4580 -0.6314 -2.0921 34 1 0.4032 -2.4117 -3.0293 35 1 2.1019 -2.6713 -3.4935 36 1 3.4402 -2.4186 0.7547 37 1 1.7960 -2.9440 1.2083 38 1 0.3672 -1.5596 2.0613 39 1 2.3921 -0.3240 3.8110 40 1 2.2271 -2.0752 3.5383 41 1 1.9018 -1.5476 6.1612 42 1 2.3020 -1.8482 7.8514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274172816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:25 Heat of formation + Delta-G solvation = -215.034335 kcal Electronic energy + Delta-G solvation = -29604.165090 eV Core-core repulsion = 24783.385454 eV Total energy + Delta-G solvation = -4820.779636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.37576 -47.92198 -47.78064 -40.67919 -38.78268 -38.05578 -34.99279 -34.14113 -32.57176 -32.14766 -31.09179 -29.04361 -27.05102 -26.11778 -24.61244 -23.78545 -22.88295 -20.13829 -19.98182 -19.71271 -18.97494 -18.85387 -17.94746 -17.69489 -17.32394 -16.75212 -16.36147 -15.60083 -15.49690 -14.94281 -14.92564 -14.70515 -14.48127 -14.28133 -14.20268 -14.09877 -13.96587 -13.93693 -13.72345 -13.60875 -13.26523 -12.98047 -12.88724 -12.50692 -12.39656 -12.33733 -12.08741 -11.86195 -11.33174 -11.22988 -11.12052 -10.94875 -10.92191 -10.41766 -10.21147 -9.88201 -9.56481 -9.22098 -8.56364 -8.20398 -8.05190 -6.76926 -3.90281 2.05466 2.07756 2.58008 3.30224 3.32303 3.34583 3.54377 3.55027 3.65094 3.81364 3.94768 4.10323 4.17747 4.30336 4.45016 4.54110 4.57342 4.76557 4.84116 4.94506 4.98315 5.05434 5.22862 5.27957 5.40127 5.46084 5.52390 5.62259 5.76702 5.76921 5.88789 5.98575 6.03054 6.40681 6.95841 7.03967 7.42560 7.59334 7.78581 8.06329 8.57868 8.77534 9.45424 9.84840 10.66495 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.019005 B = 0.002233 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.975011 B =12535.516665 C =13125.123332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.094 0.906 4 C 0.095 3.905 5 N -0.611 5.611 6 C 0.535 3.465 7 O -0.519 6.519 8 C -0.191 4.191 9 C 0.472 3.528 10 F -0.171 7.171 11 F -0.183 7.183 12 F -0.173 7.173 13 C 0.076 3.924 14 C 0.078 3.922 15 H 0.097 0.903 16 N -0.652 5.652 17 C 0.046 3.954 18 C 0.442 3.558 19 O -0.577 6.577 20 N -0.575 5.575 21 C -0.382 4.382 22 H 0.099 0.901 23 C -0.009 4.009 24 N -0.900 5.900 25 Si 1.091 2.909 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.084 0.916 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.354 0.646 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.376 0.624 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.218 2.830 -25.677 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.112 0.888 4 C -0.028 4.028 5 N -0.346 5.346 6 C 0.321 3.679 7 O -0.394 6.394 8 C -0.232 4.232 9 C 0.418 3.582 10 F -0.152 7.152 11 F -0.164 7.164 12 F -0.155 7.155 13 C -0.048 4.048 14 C -0.034 4.034 15 H 0.115 0.885 16 N -0.284 5.284 17 C -0.086 4.086 18 C 0.228 3.772 19 O -0.460 6.460 20 N -0.213 5.213 21 C -0.511 4.511 22 H 0.117 0.883 23 C -0.212 4.212 24 N -0.540 5.540 25 Si 0.917 3.083 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.103 0.897 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.176 0.824 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.209 0.791 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.067 2.652 -23.896 24.384 hybrid contribution 1.176 -0.900 -1.802 2.332 sum 5.243 1.752 -25.698 26.286 Atomic orbital electron populations 1.21624 0.93230 1.01804 1.02895 1.22291 0.97745 0.98931 0.92204 0.88763 1.22861 1.01565 0.79932 0.98437 1.48546 1.66708 1.07464 1.11857 1.19342 0.77879 0.83890 0.86771 1.90866 1.52292 1.23715 1.72535 1.22938 1.08055 0.95868 0.96359 1.19691 0.75421 0.87317 0.75811 1.93247 1.55274 1.87890 1.78828 1.93200 1.92527 1.95643 1.35046 1.93230 1.54196 1.72263 1.95787 1.23051 1.00864 0.99822 0.81104 1.22617 0.95794 0.92827 0.92173 0.88530 1.60263 1.12869 1.55479 0.99792 1.21759 0.96651 1.00331 0.89883 1.19684 0.89662 0.84562 0.83283 1.90533 1.19540 1.54671 1.81286 1.41931 1.09246 1.63623 1.06459 1.20530 0.91360 1.50285 0.88969 0.88324 1.26515 1.01226 0.95298 0.98122 1.70903 0.99996 1.46736 1.36324 0.83135 0.73287 0.77067 0.74813 1.20400 1.20999 1.20975 0.89726 0.93287 0.93251 0.90208 0.89803 0.84318 0.84444 0.91028 0.90103 0.82435 0.89421 0.93767 0.79149 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.27 37.16 0.31 -1.00 16 2 C -0.09 -0.71 3.65 -88.75 -0.32 -1.03 16 3 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 4 C 0.09 0.53 6.40 -2.13 -0.01 0.52 16 5 N -0.61 -5.55 3.19 -169.75 -0.54 -6.09 16 6 C 0.53 5.72 7.66 -10.99 -0.08 5.64 16 7 O -0.52 -8.03 15.17 5.55 0.08 -7.95 16 8 C -0.19 -1.25 4.68 -27.88 -0.13 -1.38 16 9 C 0.47 4.49 2.89 37.16 0.11 4.60 16 10 F -0.17 -2.08 16.40 2.25 0.04 -2.05 16 11 F -0.18 -1.56 17.32 2.25 0.04 -1.52 16 12 F -0.17 -2.00 16.40 2.25 0.04 -1.97 16 13 C 0.08 0.79 6.54 -2.98 -0.02 0.77 16 14 C 0.08 0.77 3.18 -66.34 -0.21 0.56 16 15 H 0.10 0.84 7.86 -51.93 -0.41 0.43 16 16 N -0.65 -9.29 4.44 -106.54 -0.47 -9.77 16 17 C 0.05 0.75 6.00 -4.98 -0.03 0.72 16 18 C 0.44 10.17 7.82 -10.98 -0.09 10.08 16 19 O -0.58 -15.45 15.78 5.55 0.09 -15.36 16 20 N -0.57 -14.27 5.28 -10.96 -0.06 -14.33 16 21 C -0.38 -10.71 9.68 -14.93 -0.14 -10.86 16 22 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 23 C -0.01 -0.25 5.50 -17.47 -0.10 -0.34 16 24 N -0.90 -25.17 13.68 55.50 0.76 -24.41 16 25 Si 1.09 24.29 29.92 -169.99 -5.09 19.20 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 29 H 0.08 1.05 7.44 -51.93 -0.39 0.66 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.53 7.92 -51.93 -0.41 0.12 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.29 7.14 -51.93 -0.37 -0.08 16 34 H 0.14 0.55 7.91 -51.93 -0.41 0.14 16 35 H 0.14 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.07 7.54 -51.93 -0.39 0.67 16 38 H 0.35 5.65 7.36 -39.29 -0.29 5.36 16 39 H 0.09 1.27 8.08 -51.93 -0.42 0.85 16 40 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 41 H 0.38 8.59 6.73 -40.82 -0.27 8.31 16 42 H 0.26 6.99 6.77 -40.82 -0.28 6.71 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -35.63 361.90 -5.73 -41.36 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.34 Total: 9.14 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -0.72 Total: 8.28 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.31 Total: -54.60 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.17 Total: -23.31 kcal Atomic # 9 Polarization: -5.64 SS G_CDS: 0.11 Total: -5.53 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.09 Total: 19.20 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.63 -5.73 -41.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274172816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.677 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds