Wall clock time and date at job start Tue Mar 31 2020 20:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.80232 * 2 1 4 4 C 1.54943 * 110.73803 * 236.70759 * 2 1 3 5 5 N 1.48121 * 103.25544 * 279.03943 * 4 2 1 6 6 C 1.34769 * 127.03498 * 140.67379 * 5 4 2 7 7 O 1.21283 * 120.00252 * 180.02562 * 6 5 4 8 8 C 1.50708 * 120.00062 * 0.04512 * 6 5 4 9 9 C 1.52999 * 109.47367 * 180.02562 * 8 6 5 10 10 F 1.39899 * 109.47365 * 59.99704 * 9 8 6 11 11 F 1.39891 * 109.47212 * 180.02562 * 9 8 6 12 12 F 1.39907 * 109.46615 * 299.99745 * 9 8 6 13 13 C 1.47493 * 105.93006 * 320.71034 * 5 4 2 14 14 C 1.53999 * 107.08454 * 25.44499 * 13 5 4 15 15 H 1.08994 * 110.32692 * 239.69764 * 14 13 5 16 16 N 1.46912 * 110.32440 * 117.58468 * 14 13 5 17 17 C 1.46896 * 110.99636 * 86.45233 * 16 14 13 18 18 C 1.50703 * 109.46774 * 179.97438 * 17 16 14 19 19 O 1.21292 * 119.99840 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99773 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00039 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99610 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00384 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99833 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00108 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47261 * 60.00199 * 25 23 21 28 28 H 1.48500 * 109.47454 * 300.00192 * 25 23 21 29 29 H 1.09006 * 109.47288 * 296.71300 * 1 2 3 30 30 H 1.09002 * 109.46798 * 56.70701 * 1 2 3 31 31 H 1.08997 * 109.47630 * 176.70817 * 1 2 3 32 32 H 1.08999 * 110.66093 * 160.60017 * 4 2 1 33 33 H 1.08996 * 110.66570 * 37.48520 * 4 2 1 34 34 H 1.09002 * 109.46568 * 300.00203 * 8 6 5 35 35 H 1.09002 * 109.46665 * 59.99649 * 8 6 5 36 36 H 1.09000 * 109.91274 * 266.07846 * 13 5 4 37 37 H 1.09005 * 110.06964 * 144.89439 * 13 5 4 38 38 H 1.00901 * 110.99811 * 322.50097 * 16 14 13 39 39 H 1.09001 * 109.47275 * 60.00237 * 17 16 14 40 40 H 1.08996 * 109.47530 * 299.99593 * 17 16 14 41 41 H 0.96992 * 120.00503 * 359.97438 * 20 18 17 42 42 H 0.96993 * 119.99996 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0786 -0.7954 -1.2112 5 7 1.9870 -2.2039 -0.7622 6 6 1.6220 -3.2696 -1.5020 7 8 1.5906 -4.3737 -1.0009 8 6 1.2533 -3.0896 -2.9521 9 6 0.8805 -4.4452 -3.5557 10 9 -0.2087 -4.9815 -2.8607 11 9 0.5388 -4.2781 -4.9019 12 9 1.9714 -5.3156 -3.4565 13 6 2.3762 -2.2014 0.6605 14 6 2.0775 -0.7936 1.2087 15 1 2.9906 -0.3321 1.5845 16 7 1.0671 -0.8642 2.2728 17 6 1.6925 -1.1261 3.5759 18 6 0.6275 -1.1909 4.6402 19 8 -0.5378 -1.0339 4.3424 20 7 0.9700 -1.4224 5.9230 21 6 0.0011 -1.4808 6.8914 22 1 -1.0365 -1.3418 6.6261 23 6 0.3541 -1.7199 8.2138 24 7 1.6166 -1.8896 8.5365 25 14 -0.9659 -1.7989 9.5332 26 1 -0.3337 -2.0632 10.8507 27 1 -1.9205 -2.8906 9.2137 28 1 -1.6928 -0.5050 9.5843 29 1 -0.3634 0.4620 0.9180 30 1 -0.3633 0.5641 -0.8590 31 1 -0.3634 -1.0259 -0.0590 32 1 3.1145 -0.5227 -1.4131 33 1 1.4580 -0.6314 -2.0921 34 1 0.4032 -2.4117 -3.0293 35 1 2.1019 -2.6713 -3.4935 36 1 3.4402 -2.4186 0.7547 37 1 1.7960 -2.9440 1.2083 38 1 0.3672 -1.5596 2.0613 39 1 2.3921 -0.3240 3.8110 40 1 2.2271 -2.0752 3.5383 41 1 1.9018 -1.5476 6.1612 42 1 2.3020 -1.8482 7.8514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274172816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:24 Heat of formation + Delta-G solvation = -241.892617 kcal Electronic energy + Delta-G solvation = -29605.329752 eV Core-core repulsion = 24783.385454 eV Total energy + Delta-G solvation = -4821.944298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.12932 -48.64803 -48.60668 -41.45238 -40.32443 -39.23163 -36.54457 -35.68278 -33.44769 -33.07118 -32.78893 -30.02449 -27.96242 -27.30215 -25.90859 -25.04927 -23.65403 -21.58508 -20.81887 -20.70247 -19.99322 -19.69777 -19.60968 -18.53517 -18.24294 -17.74657 -17.55092 -16.86792 -16.59181 -16.18526 -15.94991 -15.64980 -15.54579 -15.46013 -15.36030 -15.14319 -14.99706 -14.77793 -14.72919 -14.42281 -14.25345 -14.15743 -13.69693 -13.44814 -13.32786 -13.22482 -13.18578 -13.09162 -12.84613 -12.77215 -12.11680 -11.93147 -11.90559 -11.88395 -11.58841 -11.53680 -11.24351 -10.43084 -10.12493 -9.96725 -9.33485 -8.94054 -6.08034 1.33257 1.39998 1.51321 1.53328 1.81380 1.90870 1.99805 2.39154 2.66501 2.77392 2.93785 3.00456 3.15321 3.31891 3.49392 3.55574 3.74444 4.03310 4.09129 4.11205 4.16494 4.22869 4.26863 4.35833 4.48441 4.52863 4.65614 4.69797 4.79563 4.89500 5.08227 5.17949 5.33611 5.57259 5.61337 5.92483 5.98427 6.19773 6.33279 6.56661 6.73264 6.85051 7.43050 7.91424 8.53863 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.019005 B = 0.002233 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.975011 B =12535.516665 C =13125.123332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 H 0.119 0.881 4 C 0.098 3.902 5 N -0.609 5.609 6 C 0.525 3.475 7 O -0.581 6.581 8 C -0.176 4.176 9 C 0.464 3.536 10 F -0.193 7.193 11 F -0.176 7.176 12 F -0.190 7.190 13 C 0.077 3.923 14 C 0.078 3.922 15 H 0.119 0.881 16 N -0.661 5.661 17 C 0.062 3.938 18 C 0.440 3.560 19 O -0.619 6.619 20 N -0.587 5.587 21 C -0.410 4.410 22 H 0.072 0.928 23 C -0.042 4.042 24 N -0.917 5.917 25 Si 1.132 2.868 26 H -0.272 1.272 27 H -0.275 1.275 28 H -0.271 1.271 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.172 0.828 35 H 0.181 0.819 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.340 0.660 39 H 0.115 0.885 40 H 0.062 0.938 41 H 0.385 0.615 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.591 4.799 -27.777 28.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.137 0.863 4 C -0.023 4.023 5 N -0.342 5.342 6 C 0.314 3.686 7 O -0.461 6.461 8 C -0.216 4.216 9 C 0.409 3.591 10 F -0.175 7.175 11 F -0.157 7.157 12 F -0.172 7.172 13 C -0.048 4.048 14 C -0.033 4.033 15 H 0.137 0.863 16 N -0.292 5.292 17 C -0.071 4.071 18 C 0.228 3.772 19 O -0.504 6.504 20 N -0.226 5.226 21 C -0.540 4.540 22 H 0.090 0.910 23 C -0.241 4.241 24 N -0.556 5.556 25 Si 0.952 3.048 26 H -0.197 1.197 27 H -0.200 1.200 28 H -0.197 1.197 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.189 0.811 35 H 0.198 0.802 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.159 0.841 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.219 0.781 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.485 4.674 -26.038 27.017 hybrid contribution 0.737 -1.491 -1.249 2.080 sum 6.222 3.183 -27.287 28.168 Atomic orbital electron populations 1.21551 0.94925 1.00480 1.02210 1.22341 0.96208 1.00230 0.91927 0.86334 1.23166 1.04037 0.76840 0.98286 1.48652 1.65545 1.08816 1.11163 1.20075 0.76951 0.83262 0.88358 1.90841 1.54965 1.26196 1.74075 1.23017 1.10960 0.94346 0.93275 1.20203 0.74439 0.88329 0.76087 1.93201 1.56416 1.88463 1.79414 1.93210 1.92431 1.95574 1.34527 1.93194 1.54888 1.73179 1.95892 1.22933 1.00807 0.99059 0.82038 1.22813 0.95631 0.93060 0.91777 0.86333 1.60329 1.13916 1.54886 1.00108 1.21640 0.94449 1.02286 0.88681 1.20942 0.90648 0.81794 0.83815 1.90503 1.22065 1.55784 1.82075 1.41997 1.09197 1.64544 1.06899 1.20504 0.91064 1.51970 0.90416 0.91020 1.27806 1.02434 0.94096 0.99717 1.70969 1.00427 1.47706 1.36495 0.82646 0.71479 0.77875 0.72778 1.19656 1.20044 1.19673 0.93239 0.90720 0.95280 0.87066 0.86590 0.81066 0.80182 0.89894 0.93864 0.84060 0.86676 0.92052 0.78102 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.27 71.98 0.60 -1.70 16 2 C -0.09 -1.02 3.65 -9.58 -0.03 -1.06 16 3 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 4 C 0.10 0.61 6.40 86.73 0.56 1.17 16 5 N -0.61 -9.55 3.19 -809.37 -2.58 -12.13 16 6 C 0.52 10.47 7.66 87.66 0.67 11.14 16 7 O -0.58 -18.46 15.17 -3.04 -0.05 -18.51 16 8 C -0.18 -1.73 4.68 29.85 0.14 -1.59 16 9 C 0.46 8.26 2.89 71.98 0.21 8.47 16 10 F -0.19 -4.77 16.40 44.97 0.74 -4.03 16 11 F -0.18 -2.66 17.32 44.97 0.78 -1.89 16 12 F -0.19 -4.34 16.40 44.97 0.74 -3.61 16 13 C 0.08 1.50 6.54 86.53 0.57 2.06 16 14 C 0.08 1.36 3.18 45.80 0.15 1.50 16 15 H 0.12 1.60 7.86 -2.39 -0.02 1.58 16 16 N -0.66 -18.56 4.44 -490.98 -2.18 -20.73 16 17 C 0.06 1.95 6.00 85.56 0.51 2.47 16 18 C 0.44 20.66 7.82 87.66 0.69 21.34 16 19 O -0.62 -34.37 15.78 -3.07 -0.05 -34.42 16 20 N -0.59 -29.83 5.28 -306.98 -1.62 -31.45 16 21 C -0.41 -23.65 9.68 84.04 0.81 -22.83 16 22 H 0.07 4.45 7.16 -2.91 -0.02 4.43 16 23 C -0.04 -2.32 5.50 84.93 0.47 -1.85 16 24 N -0.92 -51.42 13.68 21.66 0.30 -51.12 16 25 Si 1.13 49.03 29.92 68.60 2.05 51.08 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 28 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 29 H 0.05 1.21 7.44 -2.38 -0.02 1.19 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.03 0.60 7.92 -2.39 -0.02 0.58 16 32 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.12 0.06 7.14 -2.39 -0.02 0.04 16 34 H 0.17 0.56 7.91 -2.39 -0.02 0.55 16 35 H 0.18 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.04 1.18 7.54 -2.38 -0.02 1.16 16 38 H 0.34 11.25 7.36 -89.69 -0.66 10.59 16 39 H 0.12 3.06 8.08 -2.39 -0.02 3.04 16 40 H 0.06 1.76 8.11 -2.39 -0.02 1.74 16 41 H 0.38 17.85 6.73 -92.71 -0.62 17.22 16 42 H 0.26 14.02 6.77 -92.71 -0.63 13.40 16 Total: -1.00 -83.89 361.90 3.40 -80.50 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: -0.06 Total: 27.19 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: 5.33 Total: 19.12 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -6.08 Total: -115.44 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -0.09 Total: -52.93 kcal Atomic # 9 Polarization: -11.78 SS G_CDS: 2.25 Total: -9.52 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 2.05 Total: 51.08 kcal Total: -83.89 3.40 -80.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274172816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.394 kcal (2) G-P(sol) polarization free energy of solvation -83.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds