Wall clock time and date at job start Tue Mar 31 2020 20:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64320 * 2 1 4 4 C 1.54320 * 110.71957 * 123.14233 * 2 1 3 5 5 N 1.47030 * 107.26874 * 96.17026 * 4 2 1 6 6 C 1.34781 * 125.64714 * 178.97208 * 5 4 2 7 7 O 1.21275 * 119.99748 * 179.97438 * 6 5 4 8 8 C 1.50698 * 119.99788 * 359.97438 * 6 5 4 9 9 C 1.53008 * 109.47044 * 179.97438 * 8 6 5 10 10 F 1.39904 * 109.46981 * 59.99621 * 9 8 6 11 11 F 1.39892 * 109.47244 * 179.97438 * 9 8 6 12 12 F 1.39901 * 109.46976 * 300.00014 * 9 8 6 13 13 C 1.47417 * 108.70479 * 358.94050 * 5 4 2 14 14 C 1.54907 * 104.83364 * 24.12527 * 13 5 4 15 15 H 1.09006 * 111.00095 * 81.06690 * 14 13 5 16 16 N 1.46904 * 111.00746 * 204.91730 * 14 13 5 17 17 C 1.46898 * 110.99829 * 267.19683 * 16 14 13 18 18 C 1.50708 * 109.46823 * 179.97438 * 17 16 14 19 19 O 1.21287 * 119.99967 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99765 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99826 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99626 * 359.97438 * 21 20 18 23 23 C 1.38945 * 119.99810 * 179.97438 * 21 20 18 24 24 N 1.31420 * 119.99622 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00292 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46906 * 89.99940 * 25 23 21 27 27 H 1.48499 * 109.47342 * 209.99661 * 25 23 21 28 28 H 1.48503 * 109.47259 * 330.00184 * 25 23 21 29 29 H 1.09001 * 109.47002 * 298.30827 * 1 2 3 30 30 H 1.08993 * 109.46955 * 58.31265 * 1 2 3 31 31 H 1.09000 * 109.47050 * 178.31094 * 1 2 3 32 32 H 1.09000 * 109.88340 * 215.58250 * 4 2 1 33 33 H 1.08996 * 109.88907 * 336.60101 * 4 2 1 34 34 H 1.08994 * 109.47320 * 299.99730 * 8 6 5 35 35 H 1.09001 * 109.47594 * 59.99822 * 8 6 5 36 36 H 1.08996 * 110.37128 * 142.96688 * 13 5 4 37 37 H 1.09010 * 110.36651 * 265.29083 * 13 5 4 38 38 H 1.00897 * 110.99571 * 31.14966 * 16 14 13 39 39 H 1.08993 * 109.47574 * 299.99709 * 17 16 14 40 40 H 1.09002 * 109.46939 * 60.00418 * 17 16 14 41 41 H 0.97001 * 120.00443 * 359.97438 * 20 18 17 42 42 H 0.96998 * 119.99473 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 2.3716 -2.1519 0.7425 6 6 2.8851 -3.1453 1.4949 7 8 3.0885 -4.2352 1.0033 8 6 3.2064 -2.9017 2.9470 9 6 3.7715 -4.1818 3.5660 10 9 4.9366 -4.5534 2.8864 11 9 4.0703 -3.9555 4.9137 12 9 2.8248 -5.2067 3.4634 13 6 2.0126 -2.2521 -0.6838 14 6 2.0789 -0.7975 -1.2125 15 1 3.1061 -0.5098 -1.4367 16 7 1.2172 -0.6253 -2.3897 17 6 1.9720 -0.8432 -3.6309 18 6 1.0569 -0.6590 -4.8142 19 8 -0.1091 -0.3738 -4.6404 20 7 1.5343 -0.8113 -6.0653 21 6 0.7020 -0.6432 -7.1417 22 1 -0.3363 -0.3892 -6.9870 23 6 1.1942 -0.7996 -8.4316 24 7 0.3963 -0.6390 -9.4634 25 14 2.9901 -1.2382 -8.6992 26 1 3.1397 -2.7154 -8.7296 27 1 3.4522 -0.6673 -9.9899 28 1 3.8063 -0.6807 -7.5908 29 1 -0.3633 0.4873 0.9048 30 1 -0.3633 0.5398 -0.8744 31 1 -0.3633 -1.0272 -0.0303 32 1 2.9869 -0.3181 1.5780 33 1 1.3274 -0.8199 2.0002 34 1 3.9436 -2.1029 3.0269 35 1 2.2986 -2.6126 3.4765 36 1 2.7293 -2.8808 -1.2121 37 1 1.0038 -2.6502 -0.7940 38 1 0.4147 -1.2351 -2.3426 39 1 2.7905 -0.1259 -3.6892 40 1 2.3750 -1.8560 -3.6380 41 1 2.4669 -1.0390 -6.2043 42 1 0.7398 -0.7485 -10.3638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274172817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:49 Heat of formation + Delta-G solvation = -213.504326 kcal Electronic energy + Delta-G solvation = -29289.403153 eV Core-core repulsion = 24468.689864 eV Total energy + Delta-G solvation = -4820.713290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.42801 -47.97275 -47.83655 -40.72452 -38.84062 -38.12519 -35.01485 -33.93691 -32.72227 -32.16128 -31.68771 -29.12844 -26.96011 -26.50828 -24.67552 -23.72139 -22.90642 -20.19689 -20.01821 -19.46972 -19.01471 -18.90875 -18.47038 -17.70749 -17.34071 -16.65535 -16.11075 -15.78083 -15.37520 -15.10490 -14.88820 -14.75700 -14.63786 -14.46307 -14.27710 -14.06232 -14.01754 -13.98784 -13.57721 -13.41167 -13.26703 -13.04475 -12.97608 -12.66649 -12.54665 -12.44879 -12.26427 -12.05742 -11.87590 -11.41552 -11.21144 -11.08011 -10.93116 -10.62186 -10.46625 -10.00807 -9.61073 -9.15534 -8.67736 -8.30872 -8.21264 -6.34415 -3.86163 2.01443 2.01886 2.53757 3.00262 3.04863 3.13420 3.27408 3.49252 3.59843 3.68268 3.89514 4.07338 4.09309 4.19581 4.38004 4.47421 4.53445 4.63405 4.79979 4.81425 4.91712 5.07599 5.17834 5.29431 5.40736 5.43927 5.52668 5.58430 5.64699 5.72309 5.85825 5.87191 5.97642 6.29267 6.91734 6.92934 7.37107 7.53518 7.53927 8.10265 8.55301 8.91025 9.38416 9.77347 10.78532 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.002180 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.876472 B =12843.540025 C =13772.048234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.096 0.904 4 C 0.096 3.904 5 N -0.608 5.608 6 C 0.531 3.469 7 O -0.520 6.520 8 C -0.191 4.191 9 C 0.472 3.528 10 F -0.173 7.173 11 F -0.183 7.183 12 F -0.173 7.173 13 C 0.077 3.923 14 C 0.080 3.920 15 H 0.095 0.905 16 N -0.648 5.648 17 C 0.044 3.956 18 C 0.449 3.551 19 O -0.565 6.565 20 N -0.589 5.589 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.356 0.644 39 H 0.090 0.910 40 H 0.047 0.953 41 H 0.371 0.629 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.852 -0.955 27.923 29.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.114 0.886 4 C -0.027 4.027 5 N -0.343 5.343 6 C 0.318 3.682 7 O -0.395 6.395 8 C -0.232 4.232 9 C 0.418 3.582 10 F -0.154 7.154 11 F -0.164 7.164 12 F -0.154 7.154 13 C -0.047 4.047 14 C -0.032 4.032 15 H 0.113 0.887 16 N -0.279 5.279 17 C -0.089 4.089 18 C 0.235 3.765 19 O -0.447 6.447 20 N -0.228 5.228 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.162 4.162 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.195 1.195 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.177 0.823 39 H 0.108 0.892 40 H 0.065 0.935 41 H 0.203 0.797 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.230 -0.759 27.540 28.754 hybrid contribution 1.653 -1.405 -0.251 2.184 sum 9.882 -2.164 27.289 29.104 Atomic orbital electron populations 1.21720 0.93232 1.02161 1.02810 1.22203 0.97541 0.99272 0.91909 0.88578 1.22391 1.00552 0.81497 0.98291 1.48212 1.62708 1.11682 1.11661 1.19385 0.78087 0.83969 0.86793 1.90856 1.52384 1.23116 1.73175 1.22944 1.06927 0.97113 0.96246 1.19702 0.76653 0.85950 0.75940 1.93234 1.49852 1.92697 1.79627 1.93203 1.93579 1.94684 1.34940 1.93235 1.64257 1.62143 1.95753 1.23205 1.01501 0.99659 0.80367 1.22839 0.97818 0.91658 0.90916 0.88693 1.60152 1.08773 1.59972 0.99039 1.21814 0.96757 1.00327 0.89964 1.19637 0.88988 0.84453 0.83466 1.90568 1.17640 1.51573 1.84936 1.42208 1.11152 1.63602 1.05854 1.19425 0.95866 1.45266 0.82882 0.86246 1.25050 0.98267 0.97628 0.95217 1.69625 1.35359 1.48363 0.98622 0.86669 0.84621 0.79368 0.78707 1.19618 1.20143 1.19473 0.92900 0.89937 0.93068 0.90906 0.90685 0.84368 0.84377 0.90052 0.90679 0.82317 0.89216 0.93453 0.79661 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.27 37.16 0.31 -0.86 16 2 C -0.09 -0.65 3.56 -88.78 -0.32 -0.97 16 3 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.10 0.52 6.07 -3.06 -0.02 0.50 16 5 N -0.61 -5.12 3.33 -170.52 -0.57 -5.69 16 6 C 0.53 5.18 7.62 -10.98 -0.08 5.10 16 7 O -0.52 -7.44 15.09 5.56 0.08 -7.36 16 8 C -0.19 -1.09 4.94 -27.88 -0.14 -1.22 16 9 C 0.47 4.08 2.89 37.16 0.11 4.19 16 10 F -0.17 -1.88 16.40 2.25 0.04 -1.84 16 11 F -0.18 -1.42 17.32 2.25 0.04 -1.38 16 12 F -0.17 -1.89 16.40 2.25 0.04 -1.85 16 13 C 0.08 0.76 6.18 -2.53 -0.02 0.75 16 14 C 0.08 0.75 3.17 -65.56 -0.21 0.54 16 15 H 0.09 0.84 7.83 -51.93 -0.41 0.44 16 16 N -0.65 -8.47 4.95 -105.72 -0.52 -8.99 16 17 C 0.04 0.66 6.03 -4.97 -0.03 0.63 16 18 C 0.45 9.67 7.82 -10.98 -0.09 9.58 16 19 O -0.57 -14.48 15.78 5.55 0.09 -14.39 16 20 N -0.59 -13.60 5.09 -10.96 -0.06 -13.66 16 21 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16 22 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.44 13.96 55.50 0.77 -24.67 16 25 Si 0.88 19.11 27.74 -169.99 -4.71 14.40 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.27 -5.30 6.52 56.52 0.37 -4.93 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.89 7.65 -51.93 -0.40 0.49 16 31 H 0.05 0.45 7.44 -51.93 -0.39 0.06 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.30 7.84 -51.93 -0.41 -0.11 16 34 H 0.14 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.14 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 37 H 0.08 0.79 7.32 -51.92 -0.38 0.41 16 38 H 0.36 4.96 7.52 -39.29 -0.30 4.66 16 39 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.37 7.51 5.76 -40.82 -0.24 7.27 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 361.03 15.07 5.44 5.44 Total: -1.00 -34.84 361.03 -5.53 -40.37 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -5.44 Total: 9.00 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: -0.73 Total: 10.61 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.37 Total: -53.00 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.17 Total: -21.75 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.11 Total: -5.08 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.71 Total: 14.40 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.84 -5.53 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274172817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.132 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds