Wall clock time and date at job start Tue Mar 31 2020 20:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 110.64320 * 2 1 4 4 C 1.54320 * 110.71957 * 123.14233 * 2 1 3 5 5 N 1.47030 * 107.26874 * 96.17026 * 4 2 1 6 6 C 1.34781 * 125.64714 * 178.97208 * 5 4 2 7 7 O 1.21275 * 119.99748 * 179.97438 * 6 5 4 8 8 C 1.50698 * 119.99788 * 359.97438 * 6 5 4 9 9 C 1.53008 * 109.47044 * 179.97438 * 8 6 5 10 10 F 1.39904 * 109.46981 * 59.99621 * 9 8 6 11 11 F 1.39892 * 109.47244 * 179.97438 * 9 8 6 12 12 F 1.39901 * 109.46976 * 300.00014 * 9 8 6 13 13 C 1.47417 * 108.70479 * 358.94050 * 5 4 2 14 14 C 1.54907 * 104.83364 * 24.12527 * 13 5 4 15 15 H 1.09006 * 111.00095 * 81.06690 * 14 13 5 16 16 N 1.46904 * 111.00746 * 204.91730 * 14 13 5 17 17 C 1.46898 * 110.99829 * 267.19683 * 16 14 13 18 18 C 1.50708 * 109.46823 * 179.97438 * 17 16 14 19 19 O 1.21287 * 119.99967 * 0.02562 * 18 17 16 20 20 N 1.34776 * 119.99765 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99826 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99626 * 359.97438 * 21 20 18 23 23 C 1.38945 * 119.99810 * 179.97438 * 21 20 18 24 24 N 1.31420 * 119.99622 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00292 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.46906 * 89.99940 * 25 23 21 27 27 H 1.48499 * 109.47342 * 209.99661 * 25 23 21 28 28 H 1.48503 * 109.47259 * 330.00184 * 25 23 21 29 29 H 1.09001 * 109.47002 * 298.30827 * 1 2 3 30 30 H 1.08993 * 109.46955 * 58.31265 * 1 2 3 31 31 H 1.09000 * 109.47050 * 178.31094 * 1 2 3 32 32 H 1.09000 * 109.88340 * 215.58250 * 4 2 1 33 33 H 1.08996 * 109.88907 * 336.60101 * 4 2 1 34 34 H 1.08994 * 109.47320 * 299.99730 * 8 6 5 35 35 H 1.09001 * 109.47594 * 59.99822 * 8 6 5 36 36 H 1.08996 * 110.37128 * 142.96688 * 13 5 4 37 37 H 1.09010 * 110.36651 * 265.29083 * 13 5 4 38 38 H 1.00897 * 110.99571 * 31.14966 * 16 14 13 39 39 H 1.08993 * 109.47574 * 299.99709 * 17 16 14 40 40 H 1.09002 * 109.46939 * 60.00418 * 17 16 14 41 41 H 0.97001 * 120.00443 * 359.97438 * 20 18 17 42 42 H 0.96998 * 119.99473 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 2.3716 -2.1519 0.7425 6 6 2.8851 -3.1453 1.4949 7 8 3.0885 -4.2352 1.0033 8 6 3.2064 -2.9017 2.9470 9 6 3.7715 -4.1818 3.5660 10 9 4.9366 -4.5534 2.8864 11 9 4.0703 -3.9555 4.9137 12 9 2.8248 -5.2067 3.4634 13 6 2.0126 -2.2521 -0.6838 14 6 2.0789 -0.7975 -1.2125 15 1 3.1061 -0.5098 -1.4367 16 7 1.2172 -0.6253 -2.3897 17 6 1.9720 -0.8432 -3.6309 18 6 1.0569 -0.6590 -4.8142 19 8 -0.1091 -0.3738 -4.6404 20 7 1.5343 -0.8113 -6.0653 21 6 0.7020 -0.6432 -7.1417 22 1 -0.3363 -0.3892 -6.9870 23 6 1.1942 -0.7996 -8.4316 24 7 0.3963 -0.6390 -9.4634 25 14 2.9901 -1.2382 -8.6992 26 1 3.1397 -2.7154 -8.7296 27 1 3.4522 -0.6673 -9.9899 28 1 3.8063 -0.6807 -7.5908 29 1 -0.3633 0.4873 0.9048 30 1 -0.3633 0.5398 -0.8744 31 1 -0.3633 -1.0272 -0.0303 32 1 2.9869 -0.3181 1.5780 33 1 1.3274 -0.8199 2.0002 34 1 3.9436 -2.1029 3.0269 35 1 2.2986 -2.6126 3.4765 36 1 2.7293 -2.8808 -1.2121 37 1 1.0038 -2.6502 -0.7940 38 1 0.4147 -1.2351 -2.3426 39 1 2.7905 -0.1259 -3.6892 40 1 2.3750 -1.8560 -3.6380 41 1 2.4669 -1.0390 -6.2043 42 1 0.7398 -0.7485 -10.3638 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274172817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:47 Heat of formation + Delta-G solvation = -240.938908 kcal Electronic energy + Delta-G solvation = -29290.592806 eV Core-core repulsion = 24468.689864 eV Total energy + Delta-G solvation = -4821.902942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -51.09352 -48.61426 -48.56957 -41.42773 -40.29927 -39.20442 -36.25691 -35.63119 -33.77265 -33.43476 -32.72445 -30.05717 -27.94927 -27.49811 -25.85208 -24.86878 -23.62188 -21.32266 -20.88850 -20.65433 -20.30958 -19.63825 -19.57476 -18.41026 -18.09905 -17.62698 -17.25658 -17.04881 -16.57729 -16.15010 -16.01302 -15.60362 -15.42334 -15.27009 -15.19796 -14.99418 -14.94747 -14.74314 -14.69469 -14.48884 -14.38442 -14.05304 -13.93013 -13.83138 -13.44933 -13.32234 -13.19114 -13.09489 -12.92419 -12.86617 -12.41573 -12.09803 -11.99587 -11.77525 -11.55200 -11.51258 -11.21295 -10.42834 -10.25060 -9.82120 -9.35867 -8.41559 -6.02296 1.29928 1.35261 1.36054 1.42105 1.44130 1.93258 1.96136 2.22578 2.67386 2.72037 2.96499 3.04086 3.15106 3.31611 3.51789 3.63171 3.75231 3.98226 4.11618 4.13544 4.21011 4.22080 4.26986 4.41237 4.52987 4.60409 4.70655 4.75753 4.83194 4.96569 5.03748 5.22182 5.36593 5.52303 5.60000 5.89656 6.02022 6.27934 6.31840 6.59120 6.87048 6.88012 7.39750 7.95973 8.75991 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.019550 B = 0.002180 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.876472 B =12843.540025 C =13772.048234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 H 0.112 0.888 4 C 0.096 3.904 5 N -0.604 5.604 6 C 0.524 3.476 7 O -0.577 6.577 8 C -0.176 4.176 9 C 0.464 3.536 10 F -0.191 7.191 11 F -0.177 7.177 12 F -0.192 7.192 13 C 0.078 3.922 14 C 0.083 3.917 15 H 0.111 0.889 16 N -0.660 5.660 17 C 0.058 3.942 18 C 0.449 3.551 19 O -0.613 6.613 20 N -0.592 5.592 21 C -0.327 4.327 22 H 0.056 0.944 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.964 3.036 26 H -0.260 1.260 27 H -0.276 1.276 28 H -0.229 1.229 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.178 0.822 35 H 0.174 0.826 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.346 0.654 39 H 0.120 0.880 40 H 0.073 0.927 41 H 0.389 0.611 42 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.147 0.049 30.743 33.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.104 4.104 3 H 0.130 0.870 4 C -0.026 4.026 5 N -0.337 5.337 6 C 0.313 3.687 7 O -0.457 6.457 8 C -0.216 4.216 9 C 0.410 3.590 10 F -0.172 7.172 11 F -0.159 7.159 12 F -0.174 7.174 13 C -0.047 4.047 14 C -0.028 4.028 15 H 0.129 0.871 16 N -0.291 5.291 17 C -0.074 4.074 18 C 0.237 3.763 19 O -0.497 6.497 20 N -0.234 5.234 21 C -0.456 4.456 22 H 0.074 0.926 23 C -0.215 4.215 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.185 1.185 27 H -0.201 1.201 28 H -0.153 1.153 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.117 0.883 34 H 0.195 0.805 35 H 0.192 0.808 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.166 0.834 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.225 0.775 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 11.533 0.288 30.414 32.529 hybrid contribution 0.457 -1.688 -1.050 2.040 sum 11.990 -1.401 29.364 31.748 Atomic orbital electron populations 1.21669 0.94430 1.01165 1.02381 1.22217 0.96473 1.00151 0.91583 0.86956 1.22636 1.02878 0.79364 0.97694 1.48269 1.61823 1.12792 1.10834 1.20065 0.77190 0.83204 0.88281 1.90835 1.54851 1.25439 1.74578 1.23020 1.09456 0.96129 0.93016 1.20210 0.75930 0.86680 0.76228 1.93197 1.50930 1.93021 1.80066 1.93211 1.93517 1.94582 1.34558 1.93196 1.64880 1.63405 1.95869 1.23035 1.00285 0.99662 0.81753 1.22922 0.98015 0.91728 0.90143 0.87134 1.60196 1.09132 1.60090 0.99654 1.21741 0.95535 1.02642 0.87494 1.20970 0.89256 0.81465 0.84617 1.90548 1.20411 1.52851 1.85882 1.42053 1.11503 1.64535 1.05297 1.19001 0.94313 1.47043 0.85269 0.92569 1.26114 1.04677 0.96674 0.94007 1.69808 1.38543 1.49713 0.99445 0.85377 0.76929 0.79573 0.79725 1.18466 1.20067 1.15251 0.90811 0.93042 0.94193 0.87366 0.88329 0.80475 0.80842 0.91694 0.92086 0.83355 0.86204 0.90938 0.77507 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.27 71.98 0.60 -1.46 16 2 C -0.08 -0.93 3.56 -9.60 -0.03 -0.96 16 3 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 4 C 0.10 0.56 6.07 86.73 0.53 1.09 16 5 N -0.60 -8.34 3.33 -811.81 -2.70 -11.04 16 6 C 0.52 8.98 7.62 87.66 0.67 9.65 16 7 O -0.58 -16.33 15.09 -3.01 -0.05 -16.38 16 8 C -0.18 -1.31 4.94 29.85 0.15 -1.16 16 9 C 0.46 7.12 2.89 71.98 0.21 7.33 16 10 F -0.19 -3.97 16.40 44.97 0.74 -3.23 16 11 F -0.18 -2.34 17.32 44.97 0.78 -1.56 16 12 F -0.19 -4.08 16.40 44.97 0.74 -3.35 16 13 C 0.08 1.42 6.18 86.86 0.54 1.96 16 14 C 0.08 1.34 3.17 46.31 0.15 1.48 16 15 H 0.11 1.50 7.83 -2.38 -0.02 1.48 16 16 N -0.66 -16.44 4.95 -488.39 -2.42 -18.86 16 17 C 0.06 1.61 6.03 85.56 0.52 2.12 16 18 C 0.45 19.43 7.82 87.66 0.69 20.11 16 19 O -0.61 -32.78 15.78 -3.05 -0.05 -32.82 16 20 N -0.59 -27.31 5.09 -306.98 -1.56 -28.88 16 21 C -0.33 -18.97 10.16 84.04 0.85 -18.11 16 22 H 0.06 3.89 7.39 -2.91 -0.02 3.86 16 23 C -0.02 -0.89 5.50 84.92 0.47 -0.43 16 24 N -0.93 -56.23 13.96 21.66 0.30 -55.93 16 25 Si 0.96 38.60 27.74 68.60 1.90 40.50 16 26 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 27 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 28 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 1.09 7.65 -2.39 -0.02 1.07 16 31 H 0.04 0.67 7.44 -2.39 -0.02 0.65 16 32 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 33 H 0.10 0.21 7.84 -2.39 -0.02 0.19 16 34 H 0.18 -0.06 8.14 -2.39 -0.02 -0.08 16 35 H 0.17 0.07 8.14 -2.39 -0.02 0.05 16 36 H 0.06 1.40 8.04 -2.39 -0.02 1.38 16 37 H 0.06 1.28 7.32 -2.38 -0.02 1.27 16 38 H 0.35 9.77 7.52 -89.70 -0.67 9.10 16 39 H 0.12 2.68 8.09 -2.39 -0.02 2.66 16 40 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.39 14.83 5.76 -92.71 -0.53 14.30 16 42 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -85.43 361.03 2.82 -82.61 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -0.18 Total: 27.30 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: 5.32 Total: 21.63 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -6.38 Total: -114.71 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -0.09 Total: -49.21 kcal Atomic # 9 Polarization: -10.38 SS G_CDS: 2.25 Total: -8.13 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.90 Total: 40.50 kcal Total: -85.43 2.82 -82.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274172817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.326 kcal (2) G-P(sol) polarization free energy of solvation -85.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -243.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds