Wall clock time and date at job start Tue Mar 31 2020 20:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.38685 * 2 1 4 4 C 1.54388 * 110.34447 * 122.22836 * 2 1 3 5 5 N 1.48147 * 104.61502 * 142.73844 * 4 2 1 6 6 C 1.34778 * 127.83668 * 140.42029 * 5 4 2 7 7 O 1.21275 * 119.99920 * 179.97438 * 6 5 4 8 8 C 1.50701 * 120.00125 * 359.96910 * 6 5 4 9 9 C 1.52999 * 109.47178 * 180.02562 * 8 6 5 10 10 F 1.39893 * 109.46938 * 60.00276 * 9 8 6 11 11 F 1.39904 * 109.46738 * 180.02562 * 9 8 6 12 12 F 1.39898 * 109.47045 * 300.00467 * 9 8 6 13 13 C 1.48146 * 104.32487 * 320.41849 * 5 4 2 14 14 C 1.54284 * 110.34160 * 237.77321 * 2 1 3 15 15 H 1.08990 * 110.34484 * 0.10050 * 14 2 1 16 16 N 1.46902 * 110.34270 * 122.25898 * 14 2 1 17 17 C 1.46904 * 110.99713 * 204.99583 * 16 14 2 18 18 C 1.50695 * 109.46798 * 179.97438 * 17 16 14 19 19 O 1.21288 * 120.00231 * 0.27184 * 18 17 16 20 20 N 1.34784 * 119.99635 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99504 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00446 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99366 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00272 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99631 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47225 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47174 * 119.99925 * 25 23 21 28 28 H 1.48506 * 109.46866 * 239.99515 * 25 23 21 29 29 H 1.08996 * 109.46997 * 182.23301 * 1 2 3 30 30 H 1.08997 * 109.47071 * 302.23002 * 1 2 3 31 31 H 1.08997 * 109.47304 * 62.23263 * 1 2 3 32 32 H 1.08996 * 110.41128 * 261.52515 * 4 2 1 33 33 H 1.09005 * 110.40283 * 23.84106 * 4 2 1 34 34 H 1.08997 * 109.47159 * 300.01055 * 8 6 5 35 35 H 1.09011 * 109.46608 * 60.00190 * 8 6 5 36 36 H 1.09003 * 110.40483 * 280.80021 * 13 5 4 37 37 H 1.09003 * 110.40715 * 158.36931 * 13 5 4 38 38 H 1.00901 * 111.00042 * 81.04433 * 16 14 2 39 39 H 1.09005 * 109.47078 * 59.99805 * 17 16 14 40 40 H 1.09002 * 109.47005 * 300.00021 * 17 16 14 41 41 H 0.96999 * 120.00044 * 0.02562 * 20 18 17 42 42 H 0.97000 * 119.99725 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0667 -0.7720 1.2245 5 7 3.2664 -1.4816 0.7226 6 6 4.4425 -1.6663 1.3546 7 8 5.3365 -2.2750 0.8060 8 6 4.6465 -1.1164 2.7427 9 6 6.0564 -1.4620 3.2261 10 9 6.9980 -0.8985 2.3583 11 9 6.2455 -0.9519 4.5150 12 9 6.2146 -2.8518 3.2470 13 6 2.8802 -1.9421 -0.6314 14 6 2.0663 -0.7714 -1.2238 15 1 1.2398 -1.1488 -1.8258 16 7 2.9332 0.0948 -2.0338 17 6 2.9732 -0.3586 -3.4305 18 6 3.8695 0.5525 -4.2289 19 8 4.4247 1.4846 -3.6866 20 7 4.0582 0.3286 -5.5445 21 6 4.8733 1.1578 -6.2709 22 1 5.3645 1.9902 -5.7889 23 6 5.0673 0.9273 -7.6274 24 7 4.4701 -0.0858 -8.2138 25 14 6.1785 2.0567 -8.6171 26 1 6.7273 3.1131 -7.7295 27 1 7.2947 1.2682 -9.1979 28 1 5.3960 2.6868 -9.7108 29 1 -0.3633 -1.0268 0.0400 30 1 -0.3633 0.5481 0.8693 31 1 -0.3634 0.4788 -0.9093 32 1 2.3400 -0.0794 2.0206 33 1 1.3227 -1.4846 1.5806 34 1 4.5235 -0.0335 2.7263 35 1 3.9125 -1.5551 3.4188 36 1 2.2640 -2.8389 -0.5665 37 1 3.7673 -2.1323 -1.2356 38 1 3.8621 0.1441 -1.6429 39 1 1.9669 -0.3357 -3.8489 40 1 3.3604 -1.3767 -3.4711 41 1 3.6167 -0.4187 -5.9775 42 1 4.6059 -0.2468 -9.1606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274172818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:55 Heat of formation + Delta-G solvation = -219.185834 kcal Electronic energy + Delta-G solvation = -29595.687125 eV Core-core repulsion = 24774.727467 eV Total energy + Delta-G solvation = -4820.959658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.29193 -47.84022 -47.69349 -40.53775 -38.62624 -37.91214 -34.72186 -33.81143 -32.85130 -32.18064 -31.21533 -28.94615 -26.73763 -26.40209 -24.59780 -23.84967 -22.54809 -20.43333 -20.03401 -19.21363 -18.87258 -18.76404 -17.89726 -17.63404 -17.15497 -16.44478 -16.08988 -15.61960 -15.31710 -15.06173 -14.66887 -14.59140 -14.49303 -14.19361 -14.13237 -14.05218 -13.87825 -13.85938 -13.75823 -13.51661 -13.19554 -12.86744 -12.73475 -12.60718 -12.32306 -12.17557 -12.15216 -11.64522 -11.56228 -11.25041 -11.16569 -11.07416 -10.96483 -10.34370 -10.33585 -10.22019 -9.51972 -9.24170 -8.47611 -8.10035 -7.96035 -6.41607 -3.82262 2.12186 2.15517 2.65231 3.17089 3.27750 3.35201 3.40442 3.62882 3.73550 3.90011 4.00318 4.19038 4.21743 4.27958 4.55265 4.61655 4.65283 4.74998 4.93509 5.04932 5.11166 5.12527 5.22757 5.26771 5.39369 5.42391 5.51078 5.70794 5.77607 5.81004 5.93481 5.95120 6.07842 6.27257 7.06777 7.16301 7.54004 7.55932 7.66439 8.06483 8.61034 9.18200 9.54089 10.05306 10.76202 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.012860 B = 0.002606 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.810839 B =10743.673778 C =12193.940943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.099 0.901 4 C 0.099 3.901 5 N -0.617 5.617 6 C 0.538 3.462 7 O -0.517 6.517 8 C -0.191 4.191 9 C 0.472 3.528 10 F -0.170 7.170 11 F -0.183 7.183 12 F -0.174 7.174 13 C 0.074 3.926 14 C 0.077 3.923 15 H 0.098 0.902 16 N -0.657 5.657 17 C 0.048 3.952 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.137 0.863 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.353 0.647 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.257 -5.290 23.241 25.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.117 0.883 4 C -0.024 4.024 5 N -0.351 5.351 6 C 0.324 3.676 7 O -0.392 6.392 8 C -0.232 4.232 9 C 0.417 3.583 10 F -0.151 7.151 11 F -0.165 7.165 12 F -0.155 7.155 13 C -0.050 4.050 14 C -0.035 4.035 15 H 0.116 0.884 16 N -0.288 5.288 17 C -0.085 4.085 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.155 0.845 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.173 0.827 39 H 0.106 0.894 40 H 0.063 0.937 41 H 0.225 0.775 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.707 -4.600 23.041 25.057 hybrid contribution 0.899 -0.801 -0.677 1.382 sum -7.808 -5.401 22.364 24.296 Atomic orbital electron populations 1.21783 0.93560 1.01817 1.02607 1.22187 0.96226 1.00958 0.92501 0.88304 1.22697 0.86580 0.95584 0.97570 1.48761 1.12633 1.55758 1.17939 1.19316 0.81392 0.80481 0.86364 1.90869 1.40589 1.40870 1.66856 1.22934 0.94801 1.07404 0.98087 1.19690 0.88432 0.75106 0.75032 1.93257 1.67802 1.84704 1.69324 1.93201 1.96121 1.87154 1.39985 1.93223 1.96387 1.29773 1.96159 1.23270 1.00331 0.98200 0.83182 1.22705 0.96115 0.90415 0.94266 0.88409 1.60230 1.17414 1.50142 1.01032 1.21748 1.00758 0.96664 0.89291 1.19770 0.86400 0.88019 0.83226 1.90528 1.52683 1.33171 1.70331 1.41864 1.42799 1.28372 1.06946 1.19756 1.22826 1.09439 0.90787 0.87871 1.25264 0.98282 0.97376 0.97022 1.69619 1.43592 1.28916 1.12186 0.85801 0.79412 0.79807 0.79342 1.19198 1.20745 1.20743 0.92597 0.92343 0.91567 0.90129 0.90384 0.84235 0.84508 0.90469 0.89491 0.82701 0.89408 0.93733 0.77467 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.92 37.16 0.33 -0.53 16 2 C -0.10 -0.79 3.45 -89.22 -0.31 -1.09 16 3 H 0.10 0.96 7.95 -51.93 -0.41 0.55 16 4 C 0.10 0.61 6.46 -2.41 -0.02 0.59 16 5 N -0.62 -5.93 3.32 -169.30 -0.56 -6.49 16 6 C 0.54 6.15 7.68 -10.98 -0.08 6.07 16 7 O -0.52 -8.38 15.10 5.56 0.08 -8.30 16 8 C -0.19 -1.40 4.73 -27.88 -0.13 -1.53 16 9 C 0.47 4.88 2.89 37.16 0.11 4.98 16 10 F -0.17 -2.26 16.40 2.25 0.04 -2.22 16 11 F -0.18 -1.70 17.32 2.25 0.04 -1.66 16 12 F -0.17 -2.12 16.40 2.25 0.04 -2.08 16 13 C 0.07 0.77 6.49 -2.41 -0.02 0.76 16 14 C 0.08 0.80 3.04 -66.31 -0.20 0.59 16 15 H 0.10 0.91 7.39 -51.93 -0.38 0.52 16 16 N -0.66 -9.92 5.80 -106.51 -0.62 -10.54 16 17 C 0.05 0.81 6.02 -4.98 -0.03 0.78 16 18 C 0.44 10.38 7.82 -10.98 -0.09 10.30 16 19 O -0.58 -15.93 15.78 5.55 0.09 -15.84 16 20 N -0.56 -14.32 5.29 -10.96 -0.06 -14.38 16 21 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 25 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.05 0.29 8.10 -51.93 -0.42 -0.13 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.33 7.30 -51.93 -0.38 -0.05 16 33 H 0.08 0.35 7.83 -51.93 -0.41 -0.06 16 34 H 0.14 0.68 7.95 -51.93 -0.41 0.27 16 35 H 0.14 0.52 8.14 -51.92 -0.42 0.10 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.15 7.73 -51.93 -0.40 0.75 16 38 H 0.35 6.02 8.12 -39.29 -0.32 5.71 16 39 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 40 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 41 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 366.49 15.07 5.52 5.52 Total: -1.00 -34.98 366.49 -5.90 -40.89 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.50 Total: 9.92 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: -0.67 Total: 12.87 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.51 Total: -55.34 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: 0.17 Total: -24.14 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.11 Total: -5.96 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.98 -5.90 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274172818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.299 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds