Wall clock time and date at job start Tue Mar 31 2020 20:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.38685 * 2 1 4 4 C 1.54388 * 110.34447 * 122.22836 * 2 1 3 5 5 N 1.48147 * 104.61502 * 142.73844 * 4 2 1 6 6 C 1.34778 * 127.83668 * 140.42029 * 5 4 2 7 7 O 1.21275 * 119.99920 * 179.97438 * 6 5 4 8 8 C 1.50701 * 120.00125 * 359.96910 * 6 5 4 9 9 C 1.52999 * 109.47178 * 180.02562 * 8 6 5 10 10 F 1.39893 * 109.46938 * 60.00276 * 9 8 6 11 11 F 1.39904 * 109.46738 * 180.02562 * 9 8 6 12 12 F 1.39898 * 109.47045 * 300.00467 * 9 8 6 13 13 C 1.48146 * 104.32487 * 320.41849 * 5 4 2 14 14 C 1.54284 * 110.34160 * 237.77321 * 2 1 3 15 15 H 1.08990 * 110.34484 * 0.10050 * 14 2 1 16 16 N 1.46902 * 110.34270 * 122.25898 * 14 2 1 17 17 C 1.46904 * 110.99713 * 204.99583 * 16 14 2 18 18 C 1.50695 * 109.46798 * 179.97438 * 17 16 14 19 19 O 1.21288 * 120.00231 * 0.27184 * 18 17 16 20 20 N 1.34784 * 119.99635 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99504 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00446 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99366 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00272 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99631 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47225 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47174 * 119.99925 * 25 23 21 28 28 H 1.48506 * 109.46866 * 239.99515 * 25 23 21 29 29 H 1.08996 * 109.46997 * 182.23301 * 1 2 3 30 30 H 1.08997 * 109.47071 * 302.23002 * 1 2 3 31 31 H 1.08997 * 109.47304 * 62.23263 * 1 2 3 32 32 H 1.08996 * 110.41128 * 261.52515 * 4 2 1 33 33 H 1.09005 * 110.40283 * 23.84106 * 4 2 1 34 34 H 1.08997 * 109.47159 * 300.01055 * 8 6 5 35 35 H 1.09011 * 109.46608 * 60.00190 * 8 6 5 36 36 H 1.09003 * 110.40483 * 280.80021 * 13 5 4 37 37 H 1.09003 * 110.40715 * 158.36931 * 13 5 4 38 38 H 1.00901 * 111.00042 * 81.04433 * 16 14 2 39 39 H 1.09005 * 109.47078 * 59.99805 * 17 16 14 40 40 H 1.09002 * 109.47005 * 300.00021 * 17 16 14 41 41 H 0.96999 * 120.00044 * 0.02562 * 20 18 17 42 42 H 0.97000 * 119.99725 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0667 -0.7720 1.2245 5 7 3.2664 -1.4816 0.7226 6 6 4.4425 -1.6663 1.3546 7 8 5.3365 -2.2750 0.8060 8 6 4.6465 -1.1164 2.7427 9 6 6.0564 -1.4620 3.2261 10 9 6.9980 -0.8985 2.3583 11 9 6.2455 -0.9519 4.5150 12 9 6.2146 -2.8518 3.2470 13 6 2.8802 -1.9421 -0.6314 14 6 2.0663 -0.7714 -1.2238 15 1 1.2398 -1.1488 -1.8258 16 7 2.9332 0.0948 -2.0338 17 6 2.9732 -0.3586 -3.4305 18 6 3.8695 0.5525 -4.2289 19 8 4.4247 1.4846 -3.6866 20 7 4.0582 0.3286 -5.5445 21 6 4.8733 1.1578 -6.2709 22 1 5.3645 1.9902 -5.7889 23 6 5.0673 0.9273 -7.6274 24 7 4.4701 -0.0858 -8.2138 25 14 6.1785 2.0567 -8.6171 26 1 6.7273 3.1131 -7.7295 27 1 7.2947 1.2682 -9.1979 28 1 5.3960 2.6868 -9.7108 29 1 -0.3633 -1.0268 0.0400 30 1 -0.3633 0.5481 0.8693 31 1 -0.3634 0.4788 -0.9093 32 1 2.3400 -0.0794 2.0206 33 1 1.3227 -1.4846 1.5806 34 1 4.5235 -0.0335 2.7263 35 1 3.9125 -1.5551 3.4188 36 1 2.2640 -2.8389 -0.5665 37 1 3.7673 -2.1323 -1.2356 38 1 3.8621 0.1441 -1.6429 39 1 1.9669 -0.3357 -3.8489 40 1 3.3604 -1.3767 -3.4711 41 1 3.6167 -0.4187 -5.9775 42 1 4.6059 -0.2468 -9.1606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274172818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:53 Heat of formation + Delta-G solvation = -246.163311 kcal Electronic energy + Delta-G solvation = -29596.856956 eV Core-core repulsion = 24774.727467 eV Total energy + Delta-G solvation = -4822.129490 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.11940 -48.63797 -48.59631 -41.35138 -40.16852 -39.13832 -36.19341 -35.50025 -33.66946 -33.25765 -32.83766 -29.98057 -27.88352 -27.28062 -26.07290 -24.90365 -23.40738 -21.40342 -20.85720 -20.77676 -19.92256 -19.65788 -19.59487 -18.44289 -18.10064 -17.60373 -17.25959 -16.74787 -16.39775 -16.29846 -16.14765 -15.74534 -15.48069 -15.46690 -15.24566 -15.00821 -14.84881 -14.76860 -14.72544 -14.66659 -14.10762 -13.81365 -13.68445 -13.54641 -13.42659 -13.24726 -13.06511 -13.02886 -12.88103 -12.80200 -12.43549 -12.14027 -11.98318 -11.83925 -11.63109 -11.53734 -11.22056 -10.38403 -10.05833 -10.02179 -9.27068 -8.49142 -5.97883 1.34498 1.34860 1.40038 1.41824 1.54378 1.92389 2.02658 2.27377 2.67685 2.86947 2.94716 3.01677 3.17953 3.41964 3.53999 3.57511 3.82090 4.07550 4.13998 4.17246 4.20548 4.29868 4.39082 4.46209 4.51961 4.58479 4.68070 4.72072 4.81554 4.94696 5.11529 5.21527 5.38491 5.40477 5.53128 5.89967 6.10523 6.25329 6.36885 6.57618 6.86609 7.10367 7.53517 8.09071 8.68510 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.012860 B = 0.002606 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.810839 B =10743.673778 C =12193.940943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 H 0.078 0.922 4 C 0.099 3.901 5 N -0.615 5.615 6 C 0.527 3.473 7 O -0.579 6.579 8 C -0.177 4.177 9 C 0.464 3.536 10 F -0.194 7.194 11 F -0.176 7.176 12 F -0.189 7.189 13 C 0.074 3.926 14 C 0.076 3.924 15 H 0.114 0.886 16 N -0.667 5.667 17 C 0.063 3.937 18 C 0.435 3.565 19 O -0.625 6.625 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.268 1.268 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.169 0.831 35 H 0.181 0.819 36 H 0.102 0.898 37 H 0.050 0.950 38 H 0.337 0.663 39 H 0.113 0.887 40 H 0.060 0.940 41 H 0.397 0.603 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.571 -5.449 24.683 27.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.097 0.903 4 C -0.022 4.022 5 N -0.348 5.348 6 C 0.316 3.684 7 O -0.459 6.459 8 C -0.217 4.217 9 C 0.409 3.591 10 F -0.176 7.176 11 F -0.158 7.158 12 F -0.170 7.170 13 C -0.050 4.050 14 C -0.035 4.035 15 H 0.132 0.868 16 N -0.298 5.298 17 C -0.069 4.069 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.464 4.464 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.193 1.193 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.187 0.813 35 H 0.199 0.801 36 H 0.120 0.880 37 H 0.069 0.931 38 H 0.155 0.845 39 H 0.131 0.869 40 H 0.078 0.922 41 H 0.231 0.769 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.098 -4.769 24.497 27.313 hybrid contribution 1.582 -0.756 -1.082 2.060 sum -9.516 -5.525 23.415 25.872 Atomic orbital electron populations 1.21747 0.91705 1.03039 1.02683 1.22151 0.97584 0.99694 0.92011 0.90316 1.22990 0.85580 0.96389 0.97223 1.48880 1.13169 1.55206 1.17523 1.20031 0.80957 0.79778 0.87661 1.90843 1.42617 1.43800 1.68619 1.23012 0.93417 1.09223 0.96009 1.20200 0.89511 0.74339 0.75008 1.93207 1.69104 1.84998 1.70246 1.93210 1.96197 1.86936 1.39416 1.93189 1.96556 1.31080 1.96223 1.23212 0.99086 0.99190 0.83535 1.22906 0.95432 0.90254 0.94889 0.86770 1.60299 1.17024 1.52011 1.00469 1.21615 1.00206 0.95386 0.89695 1.20940 0.85927 0.87969 0.82850 1.90491 1.54357 1.35279 1.71071 1.41936 1.42960 1.28378 1.07733 1.19691 1.24709 1.10116 0.91907 0.90516 1.26038 0.99196 0.98657 0.97320 1.69672 1.43980 1.29594 1.12795 0.84880 0.77857 0.77860 0.77797 1.19904 1.19658 1.19299 0.90901 0.90631 0.93075 0.87267 0.87284 0.81305 0.80110 0.88007 0.93134 0.84468 0.86867 0.92185 0.76928 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 8.92 71.98 0.64 -0.51 16 2 C -0.09 -1.23 3.45 -9.89 -0.03 -1.27 16 3 H 0.08 1.39 7.95 -2.39 -0.02 1.37 16 4 C 0.10 0.80 6.46 86.53 0.56 1.36 16 5 N -0.62 -10.55 3.32 -807.94 -2.68 -13.23 16 6 C 0.53 11.51 7.68 87.66 0.67 12.18 16 7 O -0.58 -19.43 15.10 -3.01 -0.05 -19.48 16 8 C -0.18 -2.11 4.73 29.85 0.14 -1.97 16 9 C 0.46 9.21 2.89 71.98 0.21 9.42 16 10 F -0.19 -5.32 16.40 44.97 0.74 -4.58 16 11 F -0.18 -3.00 17.32 44.97 0.78 -2.22 16 12 F -0.19 -4.60 16.40 44.97 0.74 -3.86 16 13 C 0.07 1.45 6.49 86.54 0.56 2.01 16 14 C 0.08 1.44 3.04 45.82 0.14 1.58 16 15 H 0.11 1.80 7.39 -2.39 -0.02 1.78 16 16 N -0.67 -20.10 5.80 -490.88 -2.85 -22.94 16 17 C 0.06 2.13 6.02 85.55 0.51 2.65 16 18 C 0.44 21.13 7.82 87.65 0.69 21.82 16 19 O -0.63 -35.61 15.78 -3.05 -0.05 -35.65 16 20 N -0.57 -29.98 5.29 -306.98 -1.62 -31.60 16 21 C -0.33 -19.45 9.68 84.04 0.81 -18.64 16 22 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 24 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 25 Si 0.99 43.77 29.55 68.60 2.03 45.80 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 27 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 28 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 29 H 0.07 0.41 8.10 -2.39 -0.02 0.39 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.11 0.32 7.30 -2.39 -0.02 0.30 16 33 H 0.11 0.33 7.83 -2.38 -0.02 0.31 16 34 H 0.17 1.02 7.95 -2.39 -0.02 1.00 16 35 H 0.18 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.38 7.73 -2.39 -0.02 1.36 16 38 H 0.34 11.91 8.12 -89.69 -0.73 11.18 16 39 H 0.11 3.26 8.07 -2.38 -0.02 3.24 16 40 H 0.06 1.86 8.12 -2.39 -0.02 1.84 16 41 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 42 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -81.68 366.49 2.32 -79.36 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -0.38 Total: 29.90 kcal Atomic # 6 Polarization: 23.06 SS G_CDS: 5.37 Total: 28.44 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -6.87 Total: -117.70 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -0.09 Total: -55.13 kcal Atomic # 9 Polarization: -12.92 SS G_CDS: 2.25 Total: -10.66 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -81.68 2.32 -79.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274172818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.799 kcal (2) G-P(sol) polarization free energy of solvation -81.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds