Wall clock time and date at job start Tue Mar 31 2020 20:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.63921 * 2 1 4 4 C 1.54329 * 110.87316 * 236.75297 * 2 1 3 5 5 N 1.47019 * 107.26922 * 219.36979 * 4 2 1 6 6 C 1.34777 * 125.64651 * 178.90814 * 5 4 2 7 7 O 1.21281 * 120.00124 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00358 * 180.02562 * 6 5 4 9 9 C 1.50696 * 109.47714 * 179.97438 * 8 6 5 10 10 O 1.21279 * 119.99743 * 359.97438 * 9 8 6 11 11 N 1.34780 * 120.00332 * 179.97438 * 9 8 6 12 12 C 1.46494 * 119.99701 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.46722 * 180.02562 * 12 11 9 14 14 F 1.39894 * 109.47031 * 60.00332 * 13 12 11 15 15 F 1.39902 * 109.46967 * 180.02562 * 13 12 11 16 16 F 1.39898 * 109.46958 * 300.00115 * 13 12 11 17 17 C 1.47531 * 108.71833 * 358.94141 * 5 4 2 18 18 C 1.54911 * 104.77904 * 24.12032 * 17 5 4 19 19 H 1.08996 * 111.00108 * 204.89988 * 18 17 5 20 20 N 1.46498 * 111.00328 * 81.08698 * 18 17 5 21 21 C 1.36943 * 119.99727 * 89.58083 * 20 18 17 22 22 H 1.07998 * 120.00392 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99586 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00460 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99694 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 179.97438 * 25 23 21 27 27 H 1.48503 * 109.47261 * 60.00129 * 25 23 21 28 28 H 1.48500 * 109.47454 * 300.00122 * 25 23 21 29 29 H 1.09000 * 109.47088 * 296.85374 * 1 2 3 30 30 H 1.08995 * 109.47444 * 56.85756 * 1 2 3 31 31 H 1.09008 * 109.46908 * 176.85727 * 1 2 3 32 32 H 1.08991 * 109.87986 * 338.79038 * 4 2 1 33 33 H 1.09005 * 109.87949 * 99.79995 * 4 2 1 34 34 H 1.09010 * 109.46756 * 300.00204 * 8 6 5 35 35 H 1.08997 * 109.47273 * 59.99586 * 8 6 5 36 36 H 0.96995 * 119.99650 * 0.02562 * 11 9 8 37 37 H 1.08998 * 109.47911 * 300.00053 * 12 11 9 38 38 H 1.09002 * 109.47610 * 60.00348 * 12 11 9 39 39 H 1.08998 * 110.36887 * 265.30564 * 17 5 4 40 40 H 1.08995 * 110.40866 * 142.95111 * 17 5 4 41 41 H 0.96998 * 120.00095 * 269.57543 * 20 18 17 42 42 H 0.97001 * 119.99952 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0799 -0.7906 -1.2060 5 7 3.2495 -1.5469 -0.7354 6 6 3.9997 -2.3794 -1.4841 7 8 3.7286 -2.5539 -2.6533 8 6 5.1754 -3.0934 -0.8686 9 6 5.8403 -3.9565 -1.9097 10 8 5.4022 -3.9891 -3.0402 11 7 6.9217 -4.6923 -1.5846 12 6 7.5676 -5.5318 -2.5966 13 6 8.7614 -6.2566 -1.9717 14 9 8.3187 -7.0583 -0.9142 15 9 9.3786 -7.0579 -2.9383 16 9 9.6787 -5.3158 -1.4914 17 6 3.4656 -1.2446 0.6923 18 6 2.0790 -0.7933 1.2151 19 1 2.1814 -0.1491 2.0883 20 7 1.2295 -1.9486 1.5151 21 6 1.2528 -2.5096 2.7641 22 1 1.8976 -2.1007 3.5279 23 6 0.4475 -3.6039 3.0485 24 7 -0.3380 -4.1027 2.1175 25 14 0.4797 -4.3696 4.7520 26 1 -0.4640 -5.5153 4.7977 27 1 0.0751 -3.3553 5.7584 28 1 1.8531 -4.8465 5.0545 29 1 -0.3633 0.4642 0.9168 30 1 -0.3634 0.5618 -0.8604 31 1 -0.3633 -1.0262 -0.0563 32 1 1.3191 -1.4772 -1.5770 33 1 2.3750 -0.1016 -1.9974 34 1 5.8899 -2.3604 -0.4936 35 1 4.8304 -3.7186 -0.0452 36 1 7.2718 -4.6665 -0.6804 37 1 6.8530 -6.2650 -2.9706 38 1 7.9122 -4.9073 -3.4209 39 1 4.1932 -0.4407 0.8040 40 1 3.7995 -2.1360 1.2233 41 1 0.6506 -2.3161 0.8290 42 1 -0.3544 -3.7053 1.2328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274269509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:38 Heat of formation + Delta-G solvation = -204.583847 kcal Electronic energy + Delta-G solvation = -29683.293013 eV Core-core repulsion = 24862.966544 eV Total energy + Delta-G solvation = -4820.326469 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.58162 -48.09516 -48.05476 -40.40684 -39.29102 -37.45751 -35.23135 -34.16568 -32.68676 -31.25559 -30.43279 -29.03580 -27.62421 -26.00093 -23.82264 -23.67749 -22.29040 -21.24087 -19.48174 -19.27989 -19.04936 -18.83471 -18.23957 -17.65096 -17.23286 -16.28314 -15.97840 -15.87694 -15.54186 -15.22242 -14.98094 -14.87158 -14.58480 -14.48221 -14.21895 -14.20341 -14.14836 -13.73985 -13.58822 -13.44034 -13.27956 -13.08440 -12.66717 -12.36430 -12.17802 -12.14123 -11.91643 -11.64818 -11.19049 -10.90994 -10.71739 -10.35963 -10.24705 -10.20819 -10.03074 -9.62434 -9.36616 -9.25699 -9.08578 -8.27974 -7.15717 -6.20020 -3.22178 2.05635 2.43237 2.48479 2.92165 3.23523 3.32839 3.44796 3.47398 3.55731 3.65765 3.80368 4.37490 4.56194 4.62559 4.71648 4.90089 5.00993 5.05931 5.09940 5.21463 5.27404 5.40693 5.57401 5.65272 5.77716 5.80323 5.87917 6.03003 6.07134 6.22023 6.23516 6.37387 6.51044 6.65202 6.75367 6.97925 7.69026 7.82574 7.94383 8.48531 8.64777 9.09723 9.96452 10.11020 11.27187 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011161 B = 0.002951 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.150462 B = 9486.751126 C =11265.658752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.116 4.116 3 H 0.081 0.919 4 C 0.119 3.881 5 N -0.606 5.606 6 C 0.529 3.471 7 O -0.512 6.512 8 C -0.158 4.158 9 C 0.524 3.476 10 O -0.483 6.483 11 N -0.738 5.738 12 C 0.081 3.919 13 C 0.449 3.551 14 F -0.176 7.176 15 F -0.174 7.174 16 F -0.179 7.179 17 C 0.066 3.934 18 C 0.177 3.823 19 H 0.073 0.927 20 N -0.720 5.720 21 C -0.340 4.340 22 H 0.066 0.934 23 C -0.040 4.040 24 N -0.938 5.938 25 Si 1.079 2.921 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.295 1.295 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.407 0.593 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.370 0.630 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.370 2.686 -5.291 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.136 4.136 3 H 0.099 0.901 4 C -0.003 4.003 5 N -0.341 5.341 6 C 0.315 3.685 7 O -0.386 6.386 8 C -0.200 4.200 9 C 0.309 3.691 10 O -0.353 6.353 11 N -0.396 5.396 12 C -0.045 4.045 13 C 0.394 3.606 14 F -0.158 7.158 15 F -0.156 7.156 16 F -0.160 7.160 17 C -0.060 4.060 18 C 0.065 3.935 19 H 0.091 0.909 20 N -0.362 5.362 21 C -0.470 4.470 22 H 0.084 0.916 23 C -0.238 4.238 24 N -0.582 5.582 25 Si 0.909 3.091 26 H -0.211 1.211 27 H -0.222 1.222 28 H -0.223 1.223 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.242 0.758 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.205 0.795 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 16.405 1.343 -5.690 17.416 hybrid contribution 1.095 0.916 -0.396 1.482 sum 17.500 2.259 -6.085 18.665 Atomic orbital electron populations 1.21581 0.93572 1.02573 1.01079 1.22537 0.97006 0.98704 0.95306 0.90090 1.21902 0.87672 0.94334 0.96435 1.48332 1.29633 1.44372 1.11776 1.19379 0.83474 0.79475 0.86177 1.90826 1.70014 1.62162 1.15620 1.21514 0.98342 1.00620 0.99553 1.20110 0.79371 0.80003 0.89659 1.90886 1.61238 1.62434 1.20742 1.45709 1.32271 1.47733 1.13900 1.22396 0.92371 0.96763 0.92980 1.20566 0.84957 0.78081 0.76992 1.93245 1.89089 1.74935 1.58527 1.93227 1.84378 1.74825 1.63127 1.93226 1.69324 1.64674 1.88816 1.23437 1.01335 1.00698 0.80511 1.21275 0.88410 0.89564 0.94295 0.90893 1.42379 1.48270 1.33344 1.12234 1.20013 1.24345 1.13408 0.89261 0.91570 1.25765 0.96083 0.96123 1.05838 1.70889 1.39950 1.43280 1.04073 0.83261 0.75733 0.76191 0.73880 1.21062 1.22199 1.22259 0.92055 0.93487 0.91856 0.91705 0.92235 0.86060 0.85397 0.75760 0.86740 0.86813 0.92453 0.90209 0.79492 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.73 37.16 0.32 -1.66 16 2 C -0.12 -1.70 3.41 -88.78 -0.30 -2.01 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C 0.12 1.91 6.46 -3.06 -0.02 1.89 16 5 N -0.61 -9.89 3.33 -170.44 -0.57 -10.46 16 6 C 0.53 9.10 7.84 -10.99 -0.09 9.01 16 7 O -0.51 -10.94 14.51 -18.96 -0.28 -11.21 16 8 C -0.16 -1.93 5.19 -29.04 -0.15 -2.09 16 9 C 0.52 6.91 7.82 -10.99 -0.09 6.83 16 10 O -0.48 -8.70 14.18 -18.96 -0.27 -8.97 16 11 N -0.74 -6.76 5.42 -60.30 -0.33 -7.08 16 12 C 0.08 0.65 5.64 -4.04 -0.02 0.63 16 13 C 0.45 3.45 3.11 37.16 0.12 3.57 16 14 F -0.18 -1.55 17.18 2.25 0.04 -1.51 16 15 F -0.17 -1.44 17.32 2.25 0.04 -1.40 16 16 F -0.18 -1.44 17.18 2.25 0.04 -1.40 16 17 C 0.07 1.00 6.39 -2.47 -0.02 0.98 16 18 C 0.18 3.05 3.45 -65.78 -0.23 2.83 16 19 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 20 N -0.72 -16.13 4.67 -51.35 -0.24 -16.37 16 21 C -0.34 -8.66 9.97 -15.06 -0.15 -8.81 16 22 H 0.07 1.64 7.83 -52.49 -0.41 1.22 16 23 C -0.04 -1.08 5.50 -17.43 -0.10 -1.18 16 24 N -0.94 -27.82 13.70 55.49 0.76 -27.06 16 25 Si 1.08 24.48 29.92 -169.99 -5.09 19.40 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.30 -6.36 7.11 56.52 0.40 -5.95 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 1.13 6.43 -51.92 -0.33 0.79 16 32 H 0.06 1.16 7.78 -51.93 -0.40 0.76 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.12 1.05 8.14 -51.92 -0.42 0.62 16 35 H 0.13 1.45 7.85 -51.93 -0.41 1.05 16 36 H 0.41 2.74 8.36 -40.82 -0.34 2.40 16 37 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.26 7.48 -51.93 -0.39 0.88 16 41 H 0.37 8.93 5.06 -40.82 -0.21 8.72 16 42 H 0.26 7.55 6.77 -40.82 -0.28 7.27 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -34.85 363.02 -6.50 -41.35 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -5.37 Total: 9.26 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -0.72 Total: 9.99 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -0.37 Total: -60.97 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.54 Total: -20.18 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.12 Total: -4.32 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.09 Total: 19.40 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.85 -6.50 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274269509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.229 kcal (2) G-P(sol) polarization free energy of solvation -34.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds