Wall clock time and date at job start Tue Mar 31 2020 20:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.63921 * 2 1 4 4 C 1.54329 * 110.87316 * 236.75297 * 2 1 3 5 5 N 1.47019 * 107.26922 * 219.36979 * 4 2 1 6 6 C 1.34777 * 125.64651 * 178.90814 * 5 4 2 7 7 O 1.21281 * 120.00124 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00358 * 180.02562 * 6 5 4 9 9 C 1.50696 * 109.47714 * 179.97438 * 8 6 5 10 10 O 1.21279 * 119.99743 * 359.97438 * 9 8 6 11 11 N 1.34780 * 120.00332 * 179.97438 * 9 8 6 12 12 C 1.46494 * 119.99701 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.46722 * 180.02562 * 12 11 9 14 14 F 1.39894 * 109.47031 * 60.00332 * 13 12 11 15 15 F 1.39902 * 109.46967 * 180.02562 * 13 12 11 16 16 F 1.39898 * 109.46958 * 300.00115 * 13 12 11 17 17 C 1.47531 * 108.71833 * 358.94141 * 5 4 2 18 18 C 1.54911 * 104.77904 * 24.12032 * 17 5 4 19 19 H 1.08996 * 111.00108 * 204.89988 * 18 17 5 20 20 N 1.46498 * 111.00328 * 81.08698 * 18 17 5 21 21 C 1.36943 * 119.99727 * 89.58083 * 20 18 17 22 22 H 1.07998 * 120.00392 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99586 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00460 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99694 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 179.97438 * 25 23 21 27 27 H 1.48503 * 109.47261 * 60.00129 * 25 23 21 28 28 H 1.48500 * 109.47454 * 300.00122 * 25 23 21 29 29 H 1.09000 * 109.47088 * 296.85374 * 1 2 3 30 30 H 1.08995 * 109.47444 * 56.85756 * 1 2 3 31 31 H 1.09008 * 109.46908 * 176.85727 * 1 2 3 32 32 H 1.08991 * 109.87986 * 338.79038 * 4 2 1 33 33 H 1.09005 * 109.87949 * 99.79995 * 4 2 1 34 34 H 1.09010 * 109.46756 * 300.00204 * 8 6 5 35 35 H 1.08997 * 109.47273 * 59.99586 * 8 6 5 36 36 H 0.96995 * 119.99650 * 0.02562 * 11 9 8 37 37 H 1.08998 * 109.47911 * 300.00053 * 12 11 9 38 38 H 1.09002 * 109.47610 * 60.00348 * 12 11 9 39 39 H 1.08998 * 110.36887 * 265.30564 * 17 5 4 40 40 H 1.08995 * 110.40866 * 142.95111 * 17 5 4 41 41 H 0.96998 * 120.00095 * 269.57543 * 20 18 17 42 42 H 0.97001 * 119.99952 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0799 -0.7906 -1.2060 5 7 3.2495 -1.5469 -0.7354 6 6 3.9997 -2.3794 -1.4841 7 8 3.7286 -2.5539 -2.6533 8 6 5.1754 -3.0934 -0.8686 9 6 5.8403 -3.9565 -1.9097 10 8 5.4022 -3.9891 -3.0402 11 7 6.9217 -4.6923 -1.5846 12 6 7.5676 -5.5318 -2.5966 13 6 8.7614 -6.2566 -1.9717 14 9 8.3187 -7.0583 -0.9142 15 9 9.3786 -7.0579 -2.9383 16 9 9.6787 -5.3158 -1.4914 17 6 3.4656 -1.2446 0.6923 18 6 2.0790 -0.7933 1.2151 19 1 2.1814 -0.1491 2.0883 20 7 1.2295 -1.9486 1.5151 21 6 1.2528 -2.5096 2.7641 22 1 1.8976 -2.1007 3.5279 23 6 0.4475 -3.6039 3.0485 24 7 -0.3380 -4.1027 2.1175 25 14 0.4797 -4.3696 4.7520 26 1 -0.4640 -5.5153 4.7977 27 1 0.0751 -3.3553 5.7584 28 1 1.8531 -4.8465 5.0545 29 1 -0.3633 0.4642 0.9168 30 1 -0.3634 0.5618 -0.8604 31 1 -0.3633 -1.0262 -0.0563 32 1 1.3191 -1.4772 -1.5770 33 1 2.3750 -0.1016 -1.9974 34 1 5.8899 -2.3604 -0.4936 35 1 4.8304 -3.7186 -0.0452 36 1 7.2718 -4.6665 -0.6804 37 1 6.8530 -6.2650 -2.9706 38 1 7.9122 -4.9073 -3.4209 39 1 4.1932 -0.4407 0.8040 40 1 3.7995 -2.1360 1.2233 41 1 0.6506 -2.3161 0.8290 42 1 -0.3544 -3.7053 1.2328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274269509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:37 Heat of formation + Delta-G solvation = -228.772374 kcal Electronic energy + Delta-G solvation = -29684.341906 eV Core-core repulsion = 24862.966544 eV Total energy + Delta-G solvation = -4821.375362 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.24077 -48.75418 -48.71592 -41.57747 -40.47491 -38.81283 -36.19665 -35.89149 -34.07689 -32.41339 -31.96376 -29.90488 -29.13015 -27.21888 -25.62211 -24.52267 -23.59188 -22.22756 -20.78123 -20.46804 -19.70362 -19.54312 -19.47852 -19.04580 -18.38781 -17.46174 -17.16184 -16.98154 -16.65284 -16.55385 -15.98611 -15.67526 -15.58319 -15.47335 -15.26599 -15.14229 -14.87836 -14.86293 -14.76624 -14.63777 -14.52238 -14.35039 -13.91820 -13.54823 -13.45817 -13.11012 -13.01782 -12.91772 -12.78062 -12.60576 -12.14329 -11.92995 -11.69766 -11.61073 -11.37457 -11.13819 -10.92516 -10.62721 -10.48950 -9.65830 -9.00893 -8.30144 -5.25165 1.28842 1.43855 1.62969 1.63286 1.70057 1.72238 1.87542 2.20112 2.59085 2.76820 2.91341 3.11835 3.30676 3.45405 3.54608 3.76120 3.84113 3.91213 4.04188 4.06225 4.24323 4.25512 4.32233 4.37517 4.58803 4.62059 4.74636 4.79766 4.93321 4.94494 4.96678 5.15055 5.21121 5.37902 5.45714 5.70819 6.17799 6.54572 6.55719 6.99432 7.14844 7.21855 8.05265 8.19887 9.20554 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011161 B = 0.002951 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.150462 B = 9486.751126 C =11265.658752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.100 4.100 3 H 0.120 0.880 4 C 0.116 3.884 5 N -0.608 5.608 6 C 0.516 3.484 7 O -0.563 6.563 8 C -0.149 4.149 9 C 0.524 3.476 10 O -0.539 6.539 11 N -0.720 5.720 12 C 0.079 3.921 13 C 0.460 3.540 14 F -0.181 7.181 15 F -0.176 7.176 16 F -0.178 7.178 17 C 0.076 3.924 18 C 0.162 3.838 19 H 0.085 0.915 20 N -0.734 5.734 21 C -0.319 4.319 22 H 0.079 0.921 23 C -0.107 4.107 24 N -0.981 5.981 25 Si 1.124 2.876 26 H -0.305 1.305 27 H -0.278 1.278 28 H -0.274 1.274 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.026 0.974 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.167 0.833 35 H 0.141 0.859 36 H 0.421 0.579 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.357 0.643 42 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.904 4.300 -3.640 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.138 0.862 4 C -0.006 4.006 5 N -0.342 5.342 6 C 0.304 3.696 7 O -0.441 6.441 8 C -0.191 4.191 9 C 0.310 3.690 10 O -0.413 6.413 11 N -0.378 5.378 12 C -0.047 4.047 13 C 0.406 3.594 14 F -0.163 7.163 15 F -0.157 7.157 16 F -0.159 7.159 17 C -0.049 4.049 18 C 0.052 3.948 19 H 0.103 0.897 20 N -0.375 5.375 21 C -0.450 4.450 22 H 0.097 0.903 23 C -0.298 4.298 24 N -0.630 5.630 25 Si 0.950 3.050 26 H -0.232 1.232 27 H -0.204 1.204 28 H -0.200 1.200 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.184 0.816 35 H 0.158 0.842 36 H 0.260 0.740 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.190 0.810 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 19.031 3.012 -3.975 19.674 hybrid contribution 0.356 0.508 -0.931 1.119 sum 19.387 3.520 -4.906 20.305 Atomic orbital electron populations 1.21526 0.94322 1.00606 1.01978 1.22516 0.96304 0.99972 0.93163 0.86200 1.21920 0.87200 0.94048 0.97480 1.48479 1.29314 1.44085 1.12320 1.20242 0.84406 0.79127 0.85786 1.90806 1.71606 1.63695 1.17987 1.21550 0.97300 1.01283 0.98944 1.20281 0.79699 0.80007 0.89002 1.90876 1.63074 1.64424 1.22935 1.45489 1.30977 1.46479 1.14834 1.22471 0.92449 0.96791 0.92963 1.20354 0.84632 0.77803 0.76637 1.93240 1.89150 1.75125 1.58779 1.93227 1.84366 1.74886 1.63241 1.93231 1.69301 1.64613 1.88787 1.23386 1.00431 1.01863 0.79187 1.21631 0.89005 0.88320 0.95869 0.89687 1.42583 1.49213 1.34717 1.11027 1.20403 1.22218 1.12005 0.90405 0.90330 1.27024 0.96683 0.97824 1.08227 1.71007 1.42883 1.44968 1.04130 0.82667 0.76234 0.75202 0.70931 1.23182 1.20398 1.20021 0.92345 0.91127 0.95441 0.94923 0.90949 0.81578 0.84155 0.74046 0.86831 0.85980 0.87922 0.90772 0.81010 0.94975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 8.73 71.98 0.63 -3.15 16 2 C -0.10 -2.72 3.41 -9.60 -0.03 -2.75 16 3 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 4 C 0.12 3.63 6.46 86.73 0.56 4.19 16 5 N -0.61 -18.84 3.33 -811.54 -2.70 -21.55 16 6 C 0.52 17.35 7.84 87.66 0.69 18.04 16 7 O -0.56 -24.62 14.51 20.41 0.30 -24.33 16 8 C -0.15 -3.31 5.19 29.10 0.15 -3.16 16 9 C 0.52 13.25 7.82 87.65 0.69 13.93 16 10 O -0.54 -19.67 14.18 20.41 0.29 -19.38 16 11 N -0.72 -11.82 5.42 -463.06 -2.51 -14.33 16 12 C 0.08 1.17 5.64 86.38 0.49 1.65 16 13 C 0.46 6.31 3.11 71.98 0.22 6.54 16 14 F -0.18 -2.88 17.18 44.97 0.77 -2.11 16 15 F -0.18 -2.66 17.32 44.97 0.78 -1.88 16 16 F -0.18 -2.48 17.18 44.97 0.77 -1.71 16 17 C 0.08 2.02 6.39 86.84 0.56 2.57 16 18 C 0.16 5.18 3.45 46.38 0.16 5.34 16 19 H 0.09 2.56 8.11 -2.39 -0.02 2.54 16 20 N -0.73 -32.61 4.67 -316.38 -1.48 -34.09 16 21 C -0.32 -15.96 9.97 84.03 0.84 -15.12 16 22 H 0.08 3.68 7.83 -2.91 -0.02 3.66 16 23 C -0.11 -5.82 5.50 84.86 0.47 -5.36 16 24 N -0.98 -60.05 13.70 21.65 0.30 -59.76 16 25 Si 1.12 49.06 29.92 68.60 2.05 51.12 16 26 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 27 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 28 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.03 1.00 6.43 -2.38 -0.02 0.99 16 32 H 0.03 1.22 7.78 -2.39 -0.02 1.20 16 33 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.17 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.14 2.82 7.85 -2.39 -0.02 2.80 16 36 H 0.42 4.49 8.36 -92.71 -0.78 3.72 16 37 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.07 2.09 7.48 -2.39 -0.02 2.07 16 41 H 0.36 17.79 5.06 -92.71 -0.47 17.32 16 42 H 0.24 14.87 6.77 -92.71 -0.63 14.24 16 Total: -1.00 -79.56 363.02 3.96 -75.59 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: -0.02 Total: 29.68 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 5.41 Total: 22.73 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -6.39 Total: -129.72 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: 0.59 Total: -43.71 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 2.32 Total: -5.70 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.05 Total: 51.12 kcal Total: -79.56 3.96 -75.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274269509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.179 kcal (2) G-P(sol) polarization free energy of solvation -79.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds