Wall clock time and date at job start Tue Mar 31 2020 20:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.88610 * 2 1 4 4 C 1.55127 * 110.94219 * 124.07873 * 2 1 3 5 5 N 1.47422 * 104.72650 * 155.28708 * 4 2 1 6 6 C 1.34775 * 125.64914 * 155.81269 * 5 4 2 7 7 O 1.21283 * 119.99925 * 359.72499 * 6 5 4 8 8 C 1.50703 * 120.00069 * 179.71577 * 6 5 4 9 9 C 1.50700 * 109.47148 * 180.02562 * 8 6 5 10 10 O 1.21283 * 119.99803 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99675 * 180.28037 * 9 8 6 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 8 13 13 C 1.52999 * 109.46992 * 179.97438 * 12 11 9 14 14 F 1.39898 * 109.47518 * 59.99786 * 13 12 11 15 15 F 1.39904 * 109.47292 * 179.97438 * 13 12 11 16 16 F 1.39905 * 109.46987 * 299.99783 * 13 12 11 17 17 C 1.47019 * 108.70211 * 335.55317 * 5 4 2 18 18 C 1.54328 * 107.27151 * 1.28711 * 17 5 4 19 19 H 1.09003 * 110.71874 * 263.65031 * 18 17 5 20 20 N 1.46500 * 110.72154 * 140.55538 * 18 17 5 21 21 C 1.36938 * 119.99997 * 86.45012 * 20 18 17 22 22 H 1.08003 * 119.99641 * 0.02562 * 21 20 18 23 23 C 1.38808 * 120.00050 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00272 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99997 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47097 * 90.00171 * 25 23 21 27 27 H 1.48502 * 109.47086 * 210.00132 * 25 23 21 28 28 H 1.48500 * 109.47214 * 330.00508 * 25 23 21 29 29 H 1.09003 * 109.47249 * 183.88174 * 1 2 3 30 30 H 1.08996 * 109.46768 * 303.88291 * 1 2 3 31 31 H 1.09000 * 109.47316 * 63.87720 * 1 2 3 32 32 H 1.09000 * 110.49651 * 36.44180 * 4 2 1 33 33 H 1.09003 * 110.33940 * 274.05311 * 4 2 1 34 34 H 1.09009 * 109.46601 * 60.00324 * 8 6 5 35 35 H 1.08998 * 109.47035 * 300.00831 * 8 6 5 36 36 H 0.97000 * 119.99894 * 359.71837 * 11 9 8 37 37 H 1.08995 * 109.47421 * 299.99467 * 12 11 9 38 38 H 1.09001 * 109.47621 * 60.00103 * 12 11 9 39 39 H 1.09008 * 109.88210 * 120.70212 * 17 5 4 40 40 H 1.08996 * 109.88576 * 241.71100 * 17 5 4 41 41 H 0.96999 * 119.99983 * 266.45574 * 20 18 17 42 42 H 0.96995 * 120.00437 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0845 -0.8118 1.2000 5 7 3.4280 -1.2422 0.7724 6 6 4.4490 -1.5603 1.5927 7 8 4.3026 -1.4990 2.7951 8 6 5.7726 -1.9923 1.0159 9 6 6.7360 -2.2889 2.1361 10 8 6.3824 -2.1624 3.2894 11 7 7.9920 -2.6898 1.8563 12 6 8.9303 -2.9724 2.9453 13 6 10.2755 -3.4061 2.3596 14 9 10.7874 -2.3807 1.5573 15 9 11.1719 -3.6754 3.3995 16 9 10.0977 -4.5585 1.5865 17 6 3.4678 -1.2731 -0.6969 18 6 2.0861 -0.8075 -1.2026 19 1 1.4482 -1.6631 -1.4242 20 7 2.2277 0.0502 -2.3817 21 6 2.3023 -0.5084 -3.6298 22 1 2.2564 -1.5813 -3.7447 23 6 2.4360 0.3043 -4.7471 24 7 2.4915 1.6118 -4.6070 25 14 2.5371 -0.4577 -6.4496 26 1 1.1703 -0.5881 -7.0155 27 1 3.3576 0.4099 -7.3324 28 1 3.1635 -1.8007 -6.3544 29 1 -0.3634 -1.0253 0.0696 30 1 -0.3633 0.5729 0.8531 31 1 -0.3634 0.4525 -0.9227 32 1 1.4538 -1.6784 1.3986 33 1 2.1524 -0.1801 2.0857 34 1 6.1749 -1.1941 0.3920 35 1 5.6306 -2.8887 0.4122 36 1 8.2745 -2.7913 0.9339 37 1 9.0685 -2.0747 3.5479 38 1 8.5318 -3.7717 3.5701 39 1 4.2426 -0.5982 -1.0610 40 1 3.6686 -2.2876 -1.0411 41 1 2.2687 1.0139 -2.2785 42 1 2.5853 2.1797 -5.3877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274269511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:56 Heat of formation + Delta-G solvation = -208.606145 kcal Electronic energy + Delta-G solvation = -29123.368048 eV Core-core repulsion = 24302.867160 eV Total energy + Delta-G solvation = -4820.500889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.62873 -48.14231 -48.10287 -40.47395 -39.27732 -37.41019 -35.30095 -34.09598 -32.70561 -31.33012 -30.73438 -29.10131 -27.53688 -26.05476 -24.09129 -23.76554 -21.82979 -21.18502 -19.99826 -19.33527 -19.09787 -18.88576 -18.25991 -17.37857 -17.17162 -16.42462 -16.11297 -15.90941 -15.61367 -15.14159 -14.98856 -14.77988 -14.67629 -14.52914 -14.25496 -14.24701 -14.06408 -13.75965 -13.61213 -13.54633 -13.13214 -13.03953 -12.65596 -12.49974 -12.40600 -12.12087 -11.92999 -11.57186 -11.19576 -11.04737 -10.80582 -10.65291 -10.32666 -10.29766 -10.01298 -9.81425 -9.69897 -9.43589 -9.05956 -8.33760 -7.16032 -5.91307 -3.22524 1.99777 2.35018 2.41685 2.81698 3.18341 3.24261 3.34472 3.40227 3.41901 3.50306 3.74812 4.29668 4.45091 4.58957 4.65245 4.84676 4.99620 5.03846 5.10805 5.16589 5.20956 5.50858 5.59082 5.70396 5.71906 5.80662 5.86610 5.97002 6.15440 6.20685 6.32316 6.43224 6.51704 6.58159 6.82022 6.90613 7.56647 7.75379 7.86055 8.25836 8.38436 9.38132 9.91926 10.26712 11.30479 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.002540 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.735138 B =11019.703490 C =13013.046607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.084 0.916 4 C 0.116 3.884 5 N -0.615 5.615 6 C 0.527 3.473 7 O -0.512 6.512 8 C -0.159 4.159 9 C 0.523 3.477 10 O -0.484 6.484 11 N -0.738 5.738 12 C 0.081 3.919 13 C 0.448 3.552 14 F -0.177 7.177 15 F -0.174 7.174 16 F -0.178 7.178 17 C 0.070 3.930 18 C 0.177 3.823 19 H 0.066 0.934 20 N -0.712 5.712 21 C -0.249 4.249 22 H 0.072 0.928 23 C -0.007 4.007 24 N -0.929 5.929 25 Si 0.907 3.093 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.408 0.592 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.387 0.613 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.211 -9.272 12.557 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 H 0.102 0.898 4 C -0.007 4.007 5 N -0.350 5.350 6 C 0.313 3.687 7 O -0.387 6.387 8 C -0.202 4.202 9 C 0.308 3.692 10 O -0.354 6.354 11 N -0.396 5.396 12 C -0.045 4.045 13 C 0.394 3.606 14 F -0.159 7.159 15 F -0.156 7.156 16 F -0.159 7.159 17 C -0.056 4.056 18 C 0.065 3.935 19 H 0.084 0.916 20 N -0.352 5.352 21 C -0.380 4.380 22 H 0.090 0.910 23 C -0.204 4.204 24 N -0.576 5.576 25 Si 0.738 3.262 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.243 0.757 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.221 0.779 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.947 -9.252 13.940 19.994 hybrid contribution 0.719 -0.232 -1.776 1.930 sum 11.667 -9.484 12.164 19.340 Atomic orbital electron populations 1.21613 0.93877 1.01566 1.02112 1.22662 0.96327 0.99761 0.94555 0.89779 1.22285 0.82514 0.98083 0.97770 1.48512 1.11922 1.66647 1.07965 1.19440 0.84268 0.78620 0.86367 1.90828 1.82172 1.51932 1.13765 1.21534 0.94173 1.05951 0.98518 1.20120 0.81275 0.76945 0.90825 1.90887 1.75656 1.47998 1.20885 1.45725 1.12246 1.72343 1.09299 1.22396 0.84679 1.05749 0.91675 1.20567 0.88051 0.75393 0.76608 1.93240 1.88856 1.59072 1.74706 1.93230 1.70427 1.93909 1.57988 1.93236 1.95402 1.51012 1.76292 1.23370 1.03567 1.01138 0.77536 1.21240 0.91532 0.93865 0.86903 0.91579 1.42370 1.86975 1.05313 1.00543 1.19226 1.43303 0.91901 0.83576 0.90976 1.24765 1.02312 0.95347 0.98000 1.69653 1.56352 1.02309 1.29266 0.86202 0.77566 0.78053 0.84383 1.21614 1.21737 1.20654 0.92832 0.93144 0.91337 0.91650 0.90935 0.85565 0.85769 0.75674 0.86751 0.86784 0.90789 0.92279 0.77854 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.31 37.16 0.35 -1.46 16 2 C -0.11 -1.69 3.26 -88.35 -0.29 -1.98 16 3 H 0.08 1.34 8.00 -51.93 -0.42 0.93 16 4 C 0.12 1.67 6.38 -2.41 -0.02 1.65 16 5 N -0.62 -9.16 3.32 -170.38 -0.57 -9.72 16 6 C 0.53 8.09 7.84 -10.98 -0.09 8.00 16 7 O -0.51 -9.91 14.43 -18.96 -0.27 -10.19 16 8 C -0.16 -1.71 5.38 -29.03 -0.16 -1.86 16 9 C 0.52 6.12 7.82 -10.98 -0.09 6.03 16 10 O -0.48 -7.94 14.18 -18.96 -0.27 -8.21 16 11 N -0.74 -5.87 5.42 -60.30 -0.33 -6.19 16 12 C 0.08 0.56 5.64 -4.04 -0.02 0.54 16 13 C 0.45 3.08 3.11 37.16 0.12 3.19 16 14 F -0.18 -1.38 17.18 2.25 0.04 -1.34 16 15 F -0.17 -1.31 17.32 2.25 0.04 -1.27 16 16 F -0.18 -1.35 17.18 2.25 0.04 -1.31 16 17 C 0.07 1.07 6.24 -3.06 -0.02 1.05 16 18 C 0.18 3.05 3.05 -66.09 -0.20 2.85 16 19 H 0.07 1.16 8.02 -51.93 -0.42 0.74 16 20 N -0.71 -15.78 5.18 -51.65 -0.27 -16.05 16 21 C -0.25 -6.22 9.98 -15.06 -0.15 -6.37 16 22 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 24 N -0.93 -26.17 13.06 55.49 0.72 -25.45 16 25 Si 0.91 20.85 29.55 -169.99 -5.02 15.83 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.88 7.99 -51.93 -0.41 0.47 16 33 H 0.07 1.07 8.03 -51.93 -0.42 0.65 16 34 H 0.13 1.12 8.14 -51.92 -0.42 0.69 16 35 H 0.12 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.41 2.33 8.36 -40.82 -0.34 1.99 16 37 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.20 8.03 -51.92 -0.42 0.79 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.39 9.31 7.71 -40.82 -0.31 8.99 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -32.89 369.00 -6.65 -39.53 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.66 Total: 7.45 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -0.66 Total: 11.36 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.44 Total: -57.41 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.54 Total: -18.40 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.12 Total: -3.92 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.89 -6.65 -39.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274269511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.073 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds