Wall clock time and date at job start Tue Mar 31 2020 20:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.88610 * 2 1 4 4 C 1.55127 * 110.94219 * 124.07873 * 2 1 3 5 5 N 1.47422 * 104.72650 * 155.28708 * 4 2 1 6 6 C 1.34775 * 125.64914 * 155.81269 * 5 4 2 7 7 O 1.21283 * 119.99925 * 359.72499 * 6 5 4 8 8 C 1.50703 * 120.00069 * 179.71577 * 6 5 4 9 9 C 1.50700 * 109.47148 * 180.02562 * 8 6 5 10 10 O 1.21283 * 119.99803 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99675 * 180.28037 * 9 8 6 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 8 13 13 C 1.52999 * 109.46992 * 179.97438 * 12 11 9 14 14 F 1.39898 * 109.47518 * 59.99786 * 13 12 11 15 15 F 1.39904 * 109.47292 * 179.97438 * 13 12 11 16 16 F 1.39905 * 109.46987 * 299.99783 * 13 12 11 17 17 C 1.47019 * 108.70211 * 335.55317 * 5 4 2 18 18 C 1.54328 * 107.27151 * 1.28711 * 17 5 4 19 19 H 1.09003 * 110.71874 * 263.65031 * 18 17 5 20 20 N 1.46500 * 110.72154 * 140.55538 * 18 17 5 21 21 C 1.36938 * 119.99997 * 86.45012 * 20 18 17 22 22 H 1.08003 * 119.99641 * 0.02562 * 21 20 18 23 23 C 1.38808 * 120.00050 * 179.97438 * 21 20 18 24 24 N 1.31617 * 120.00272 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99997 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47097 * 90.00171 * 25 23 21 27 27 H 1.48502 * 109.47086 * 210.00132 * 25 23 21 28 28 H 1.48500 * 109.47214 * 330.00508 * 25 23 21 29 29 H 1.09003 * 109.47249 * 183.88174 * 1 2 3 30 30 H 1.08996 * 109.46768 * 303.88291 * 1 2 3 31 31 H 1.09000 * 109.47316 * 63.87720 * 1 2 3 32 32 H 1.09000 * 110.49651 * 36.44180 * 4 2 1 33 33 H 1.09003 * 110.33940 * 274.05311 * 4 2 1 34 34 H 1.09009 * 109.46601 * 60.00324 * 8 6 5 35 35 H 1.08998 * 109.47035 * 300.00831 * 8 6 5 36 36 H 0.97000 * 119.99894 * 359.71837 * 11 9 8 37 37 H 1.08995 * 109.47421 * 299.99467 * 12 11 9 38 38 H 1.09001 * 109.47621 * 60.00103 * 12 11 9 39 39 H 1.09008 * 109.88210 * 120.70212 * 17 5 4 40 40 H 1.08996 * 109.88576 * 241.71100 * 17 5 4 41 41 H 0.96999 * 119.99983 * 266.45574 * 20 18 17 42 42 H 0.96995 * 120.00437 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0845 -0.8118 1.2000 5 7 3.4280 -1.2422 0.7724 6 6 4.4490 -1.5603 1.5927 7 8 4.3026 -1.4990 2.7951 8 6 5.7726 -1.9923 1.0159 9 6 6.7360 -2.2889 2.1361 10 8 6.3824 -2.1624 3.2894 11 7 7.9920 -2.6898 1.8563 12 6 8.9303 -2.9724 2.9453 13 6 10.2755 -3.4061 2.3596 14 9 10.7874 -2.3807 1.5573 15 9 11.1719 -3.6754 3.3995 16 9 10.0977 -4.5585 1.5865 17 6 3.4678 -1.2731 -0.6969 18 6 2.0861 -0.8075 -1.2026 19 1 1.4482 -1.6631 -1.4242 20 7 2.2277 0.0502 -2.3817 21 6 2.3023 -0.5084 -3.6298 22 1 2.2564 -1.5813 -3.7447 23 6 2.4360 0.3043 -4.7471 24 7 2.4915 1.6118 -4.6070 25 14 2.5371 -0.4577 -6.4496 26 1 1.1703 -0.5881 -7.0155 27 1 3.3576 0.4099 -7.3324 28 1 3.1635 -1.8007 -6.3544 29 1 -0.3634 -1.0253 0.0696 30 1 -0.3633 0.5729 0.8531 31 1 -0.3634 0.4525 -0.9227 32 1 1.4538 -1.6784 1.3986 33 1 2.1524 -0.1801 2.0857 34 1 6.1749 -1.1941 0.3920 35 1 5.6306 -2.8887 0.4122 36 1 8.2745 -2.7913 0.9339 37 1 9.0685 -2.0747 3.5479 38 1 8.5318 -3.7717 3.5701 39 1 4.2426 -0.5982 -1.0610 40 1 3.6686 -2.2876 -1.0411 41 1 2.2687 1.0139 -2.2785 42 1 2.5853 2.1797 -5.3877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274269511.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:48 Heat of formation + Delta-G solvation = -230.662561 kcal Electronic energy + Delta-G solvation = -29124.324486 eV Core-core repulsion = 24302.867160 eV Total energy + Delta-G solvation = -4821.457327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -51.21827 -48.73321 -48.69604 -41.53092 -40.37860 -38.68583 -36.14585 -35.75709 -34.01819 -32.59594 -32.06859 -29.86644 -29.02818 -27.15217 -25.80886 -24.45233 -23.09572 -22.13283 -21.33245 -20.37451 -19.68137 -19.50922 -19.06624 -19.00723 -18.37752 -17.53291 -17.04661 -16.91358 -16.64821 -16.30161 -15.98783 -15.63151 -15.49153 -15.37374 -15.27112 -15.12240 -14.85915 -14.84415 -14.68121 -14.53992 -14.43239 -14.23235 -14.01447 -13.65497 -13.35817 -13.00596 -12.95846 -12.93401 -12.79381 -12.78448 -12.20892 -12.08777 -11.98217 -11.63316 -11.39417 -11.31529 -10.90919 -10.59850 -10.45372 -9.57474 -9.00579 -7.89373 -5.18735 1.32091 1.47520 1.54180 1.55263 1.62817 1.66075 1.71226 2.19421 2.61361 2.61985 2.93520 3.14130 3.32657 3.43085 3.58391 3.86001 3.89117 3.95543 4.09220 4.27065 4.28420 4.28689 4.36937 4.44381 4.52693 4.66112 4.73549 4.94059 4.96651 5.00059 5.15017 5.19795 5.30004 5.36196 5.52693 5.61517 6.20886 6.31180 6.56150 7.02326 7.23395 7.39312 8.11565 8.34981 9.33587 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.002540 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.735138 B =11019.703490 C =13013.046607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 H 0.070 0.930 4 C 0.118 3.882 5 N -0.614 5.614 6 C 0.521 3.479 7 O -0.556 6.556 8 C -0.153 4.153 9 C 0.526 3.474 10 O -0.537 6.537 11 N -0.722 5.722 12 C 0.080 3.920 13 C 0.459 3.541 14 F -0.181 7.181 15 F -0.177 7.177 16 F -0.180 7.180 17 C 0.083 3.917 18 C 0.169 3.831 19 H 0.070 0.930 20 N -0.723 5.723 21 C -0.235 4.235 22 H 0.083 0.917 23 C -0.071 4.071 24 N -0.969 5.969 25 Si 0.966 3.034 26 H -0.293 1.293 27 H -0.302 1.302 28 H -0.264 1.264 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.150 0.850 35 H 0.158 0.842 36 H 0.421 0.579 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.374 0.626 42 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.848 -11.106 12.323 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.124 4.124 3 H 0.088 0.912 4 C -0.005 4.005 5 N -0.349 5.349 6 C 0.309 3.691 7 O -0.434 6.434 8 C -0.195 4.195 9 C 0.312 3.688 10 O -0.412 6.412 11 N -0.379 5.379 12 C -0.046 4.046 13 C 0.404 3.596 14 F -0.163 7.163 15 F -0.158 7.158 16 F -0.161 7.161 17 C -0.042 4.042 18 C 0.059 3.941 19 H 0.088 0.912 20 N -0.361 5.361 21 C -0.367 4.367 22 H 0.101 0.899 23 C -0.263 4.263 24 N -0.619 5.619 25 Si 0.796 3.204 26 H -0.221 1.221 27 H -0.229 1.229 28 H -0.189 1.189 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.168 0.832 35 H 0.176 0.824 36 H 0.259 0.741 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.207 0.793 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.616 -11.151 13.693 21.137 hybrid contribution 0.518 0.298 -1.615 1.722 sum 12.133 -10.853 12.078 20.270 Atomic orbital electron populations 1.21571 0.92649 1.02611 1.01828 1.22559 0.97316 0.98762 0.93760 0.91169 1.22287 0.82734 0.98411 0.97065 1.48561 1.12178 1.66398 1.07744 1.20171 0.85436 0.77642 0.85841 1.90818 1.83033 1.53801 1.15709 1.21594 0.91441 1.08078 0.98410 1.20255 0.82103 0.76272 0.90192 1.90878 1.76811 1.50658 1.22850 1.45525 1.11269 1.70760 1.10369 1.22467 0.84410 1.06240 0.91439 1.20419 0.87763 0.75108 0.76306 1.93237 1.88934 1.59270 1.74827 1.93228 1.70509 1.93912 1.58146 1.93235 1.95394 1.51164 1.76353 1.23058 1.01565 1.02034 0.77586 1.21437 0.92931 0.93616 0.86101 0.91206 1.42494 1.87147 1.05203 1.01299 1.19622 1.40187 0.92330 0.84514 0.89873 1.25473 1.03823 0.95734 1.01309 1.69803 1.59078 1.03573 1.29451 0.85249 0.76969 0.77729 0.80441 1.22071 1.22932 1.18899 0.91425 0.91319 0.93410 0.90238 0.91444 0.83244 0.82428 0.74091 0.86401 0.86171 0.91589 0.90093 0.79321 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.31 71.98 0.67 -2.62 16 2 C -0.10 -3.00 3.26 -9.32 -0.03 -3.03 16 3 H 0.07 2.23 8.00 -2.39 -0.02 2.21 16 4 C 0.12 3.20 6.38 86.93 0.55 3.76 16 5 N -0.61 -17.10 3.32 -811.35 -2.70 -19.80 16 6 C 0.52 15.18 7.84 87.66 0.69 15.86 16 7 O -0.56 -21.34 14.43 20.40 0.29 -21.05 16 8 C -0.15 -2.88 5.38 29.10 0.16 -2.72 16 9 C 0.53 11.41 7.82 87.66 0.69 12.09 16 10 O -0.54 -17.45 14.18 20.40 0.29 -17.16 16 11 N -0.72 -9.90 5.42 -463.07 -2.51 -12.41 16 12 C 0.08 0.98 5.64 86.38 0.49 1.47 16 13 C 0.46 5.49 3.11 71.98 0.22 5.72 16 14 F -0.18 -2.49 17.18 44.97 0.77 -1.72 16 15 F -0.18 -2.39 17.32 44.97 0.78 -1.61 16 16 F -0.18 -2.36 17.18 44.97 0.77 -1.59 16 17 C 0.08 2.33 6.24 86.73 0.54 2.87 16 18 C 0.17 5.57 3.05 46.18 0.14 5.71 16 19 H 0.07 2.28 8.02 -2.39 -0.02 2.26 16 20 N -0.72 -31.53 5.18 -317.31 -1.64 -33.18 16 21 C -0.23 -11.44 9.98 84.03 0.84 -10.61 16 22 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 23 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 24 N -0.97 -55.37 13.06 21.65 0.28 -55.09 16 25 Si 0.97 42.55 29.55 68.60 2.03 44.58 16 26 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 27 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 28 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 29 H 0.07 1.53 8.07 -2.39 -0.02 1.51 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.96 7.99 -2.39 -0.02 1.94 16 33 H 0.07 1.93 8.03 -2.39 -0.02 1.91 16 34 H 0.15 2.14 8.14 -2.38 -0.02 2.13 16 35 H 0.16 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.42 3.59 8.36 -92.71 -0.78 2.81 16 37 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 2.00 8.03 -2.38 -0.02 1.98 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.37 18.18 7.71 -92.71 -0.72 17.46 16 42 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -71.75 369.00 3.38 -68.38 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.41 Total: 25.40 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 5.42 Total: 25.25 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -6.56 Total: -120.47 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: 0.58 Total: -38.21 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 2.32 Total: -4.92 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -71.75 3.38 -68.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274269511.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.287 kcal (2) G-P(sol) polarization free energy of solvation -71.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds