Wall clock time and date at job start Tue Mar 31 2020 21:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47359 * 2 1 4 4 N 1.46493 * 109.47117 * 120.00360 * 2 1 3 5 5 C 1.36936 * 120.00051 * 274.72282 * 4 2 1 6 6 H 1.08001 * 120.00027 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00143 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99971 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99976 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46794 * 89.99880 * 9 7 5 11 11 H 1.48493 * 109.47171 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.46988 * 330.00115 * 9 7 5 13 13 C 1.53007 * 109.47019 * 240.00192 * 2 1 3 14 14 H 1.09000 * 109.51116 * 64.89898 * 13 2 1 15 15 C 1.53292 * 109.51378 * 185.00331 * 13 2 1 16 16 N 1.47148 * 108.38675 * 172.22808 * 15 13 2 17 17 C 1.34778 * 120.98448 * 129.48502 * 16 15 13 18 18 O 1.21606 * 119.99905 * 353.13756 * 17 16 15 19 19 C 1.47287 * 119.99847 * 173.13746 * 17 16 15 20 20 C 1.36575 * 125.80398 * 172.61300 * 19 17 16 21 21 C 1.40067 * 106.92525 * 179.97438 * 20 19 17 22 22 C 1.36575 * 106.92639 * 0.02562 * 21 20 19 23 23 C 1.47290 * 125.80258 * 180.02562 * 22 21 20 24 24 N 1.34777 * 119.99671 * 179.97438 * 23 22 21 25 25 O 1.21607 * 120.00303 * 359.97438 * 23 22 21 26 26 O 1.34547 * 108.38646 * 359.76993 * 22 21 20 27 27 C 1.47154 * 118.03258 * 309.45979 * 16 15 13 28 28 C 1.53293 * 108.38435 * 50.53786 * 27 16 15 29 29 O 1.42957 * 109.22251 * 307.69906 * 28 27 16 30 30 H 1.09004 * 109.47192 * 59.99713 * 1 2 3 31 31 H 1.09001 * 109.47440 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47069 * 299.99885 * 1 2 3 33 33 H 0.97006 * 119.99984 * 94.99648 * 4 2 1 34 34 H 0.97003 * 119.99977 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.67797 * 291.95011 * 15 13 2 36 36 H 1.08995 * 109.68596 * 52.49825 * 15 13 2 37 37 H 1.08000 * 126.53917 * 359.92266 * 20 19 17 38 38 H 1.07995 * 126.53686 * 179.97438 * 21 20 19 39 39 H 0.97001 * 119.99903 * 359.97438 * 24 23 22 40 40 H 0.97000 * 120.00264 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.68045 * 170.25525 * 27 16 15 42 42 H 1.08999 * 109.68078 * 290.81105 * 27 16 15 43 43 H 1.09001 * 109.51244 * 67.62070 * 28 27 16 44 44 H 1.09002 * 109.51489 * 187.72108 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1545 -0.0062 2.3743 6 1 1.9022 1.0428 2.4216 7 6 2.6177 -0.6605 3.5075 8 7 2.9255 -1.9389 3.4497 9 14 2.8041 0.2734 5.1146 10 1 1.5380 0.1884 5.8861 11 1 3.9084 -0.3229 5.9084 12 1 3.1138 1.6969 4.8268 13 6 2.0400 -0.7212 -1.2493 14 1 1.7504 -0.1597 -2.1376 15 6 3.5677 -0.8319 -1.1889 16 7 4.0154 -1.6876 -2.2992 17 6 4.9965 -1.2870 -3.1319 18 8 5.4395 -0.1574 -3.0507 19 6 5.5321 -2.2174 -4.1403 20 6 6.4177 -1.8995 -5.1302 21 6 6.6567 -3.0734 -5.8560 22 6 5.9063 -4.0576 -5.2785 23 6 5.8460 -5.4632 -5.7146 24 7 5.0625 -6.3400 -5.0559 25 8 6.5031 -5.8325 -6.6688 26 8 5.2358 -3.5261 -4.2401 27 6 3.3605 -2.9938 -2.4731 28 6 1.8429 -2.7779 -2.4709 29 8 1.4750 -2.0332 -1.3074 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2489 -1.6319 1.1525 34 1 3.2489 -2.3962 4.2417 35 1 4.0116 0.1589 -1.2869 36 1 3.8664 -1.2761 -0.2395 37 1 6.8506 -0.9281 -5.3181 38 1 7.3091 -3.1798 -6.7099 39 1 4.5386 -6.0455 -4.2945 40 1 5.0225 -7.2656 -5.3433 41 1 3.6671 -3.4348 -3.4215 42 1 3.6384 -3.6558 -1.6529 43 1 1.5525 -2.2247 -3.3641 44 1 1.3377 -3.7438 -2.4607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276787083.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:13 Heat of formation + Delta-G solvation = -69.185909 kcal Electronic energy + Delta-G solvation = -29802.849170 eV Core-core repulsion = 25530.250736 eV Total energy + Delta-G solvation = -4272.598433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -43.27266 -40.28403 -39.60376 -38.44594 -35.64072 -34.77946 -34.36431 -33.40605 -32.36328 -30.89422 -30.14241 -28.43807 -27.90148 -25.16177 -24.10851 -23.58909 -22.80633 -22.01543 -21.02862 -20.21005 -19.73308 -18.68086 -17.83732 -17.36064 -17.31308 -17.05858 -16.47380 -15.96696 -15.57761 -15.16505 -14.97254 -14.79651 -14.62952 -14.38952 -14.21807 -13.70497 -13.57058 -13.44320 -13.42256 -13.24889 -13.03965 -12.39371 -11.95872 -11.80852 -11.42259 -11.27409 -11.04639 -10.87128 -10.82776 -10.59543 -10.51428 -10.46767 -10.30807 -10.23464 -9.96859 -9.94019 -9.62149 -9.21793 -8.95868 -8.52084 -6.96869 -5.77452 -3.06086 0.24940 1.54419 1.91040 2.66086 2.68002 2.87105 3.01931 3.43235 3.48991 3.50065 3.90247 4.02815 4.39633 4.47951 4.57932 4.72101 4.87919 5.01500 5.08893 5.16945 5.19865 5.34648 5.38107 5.50999 5.58793 5.61312 5.73298 5.74383 5.80861 5.93128 6.04803 6.16058 6.21107 6.28607 6.36324 6.44398 6.62742 6.75076 6.75291 7.10976 7.12471 7.38658 7.58573 7.69676 7.78955 8.40692 9.53162 10.08785 10.45677 11.44759 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016526 B = 0.002733 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.842235 B =10241.513482 C =10287.019532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.182 3.818 3 H 0.061 0.939 4 N -0.718 5.718 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.930 5.930 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.077 3.923 14 H 0.057 0.943 15 C 0.085 3.915 16 N -0.598 5.598 17 C 0.596 3.404 18 O -0.512 6.512 19 C -0.027 4.027 20 C -0.137 4.137 21 C -0.123 4.123 22 C -0.065 4.065 23 C 0.611 3.389 24 N -0.840 5.840 25 O -0.519 6.519 26 O -0.148 6.148 27 C 0.061 3.939 28 C 0.049 3.951 29 O -0.357 6.357 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.389 0.611 34 H 0.254 0.746 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.170 0.830 38 H 0.169 0.831 39 H 0.409 0.591 40 H 0.412 0.588 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.050 0.950 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.825 -6.456 -19.551 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.079 0.921 4 N -0.361 5.361 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.018 3.982 14 H 0.075 0.925 15 C -0.036 4.036 16 N -0.331 5.331 17 C 0.382 3.618 18 O -0.389 6.389 19 C -0.081 4.081 20 C -0.157 4.157 21 C -0.144 4.144 22 C -0.118 4.118 23 C 0.395 3.605 24 N -0.404 5.404 25 O -0.396 6.396 26 O -0.045 6.045 27 C -0.061 4.061 28 C -0.029 4.029 29 O -0.275 6.275 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.224 0.776 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.188 0.812 38 H 0.186 0.814 39 H 0.238 0.762 40 H 0.244 0.756 41 H 0.119 0.881 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.232 -6.035 -19.616 20.644 hybrid contribution 0.144 -0.072 0.920 0.934 sum 2.376 -6.106 -18.696 19.811 Atomic orbital electron populations 1.22325 0.98352 1.01637 0.99642 1.20266 0.92930 0.94644 0.84978 0.92092 1.42411 1.77687 1.10888 1.05078 1.19234 1.36616 0.93745 0.87459 0.91160 1.24716 1.02145 0.95917 0.97966 1.69664 1.50851 1.08545 1.28809 0.86224 0.77248 0.78861 0.84053 1.21800 1.21869 1.20763 1.22950 0.91238 0.84189 0.99826 0.92490 1.22619 0.95406 0.96606 0.88961 1.48148 1.35570 1.19436 1.29926 1.16793 0.80027 0.85356 0.79575 1.90883 1.60208 1.17877 1.69900 1.22587 1.02750 0.81578 1.01175 1.22003 0.98377 1.00752 0.94582 1.21991 1.00184 0.90767 1.01439 1.22396 1.01496 0.95202 0.92747 1.16613 0.79501 0.82204 0.82197 1.43700 1.47801 1.13500 1.35381 1.90927 1.44008 1.77256 1.27360 1.84240 1.55047 1.22463 1.42732 1.22880 0.94463 0.84906 1.03894 1.22888 0.92830 0.97678 0.89509 1.88122 1.70824 1.27114 1.41482 0.94842 0.92455 0.92748 0.77625 0.93576 0.88101 0.87680 0.81213 0.81361 0.76170 0.75619 0.88107 0.89499 0.93200 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.30 37.16 0.35 -2.49 16 2 C 0.18 3.46 2.80 -67.93 -0.19 3.27 16 3 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 4 N -0.72 -17.04 4.24 -53.43 -0.23 -17.27 16 5 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 8 N -0.93 -27.31 13.06 55.49 0.72 -26.58 16 9 Si 0.90 22.02 29.55 -169.99 -5.02 17.00 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.08 1.24 2.57 -26.58 -0.07 1.17 16 14 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 15 C 0.09 1.41 5.84 -3.54 -0.02 1.39 16 16 N -0.60 -8.40 3.02 -173.60 -0.52 -8.92 16 17 C 0.60 8.60 7.68 -12.58 -0.10 8.51 16 18 O -0.51 -8.82 16.35 5.27 0.09 -8.73 16 19 C -0.03 -0.32 6.77 -36.50 -0.25 -0.57 16 20 C -0.14 -1.41 10.60 -39.50 -0.42 -1.82 16 21 C -0.12 -1.16 10.60 -39.50 -0.42 -1.57 16 22 C -0.07 -0.62 7.14 -36.50 -0.26 -0.88 16 23 C 0.61 5.59 8.08 -12.58 -0.10 5.48 16 24 N -0.84 -4.50 8.87 30.40 0.27 -4.23 16 25 O -0.52 -6.37 17.70 5.27 0.09 -6.28 16 26 O -0.15 -1.45 7.04 4.35 0.03 -1.42 16 27 C 0.06 0.67 6.25 -3.53 -0.02 0.65 16 28 C 0.05 0.55 6.98 37.31 0.26 0.81 16 29 O -0.36 -5.62 9.24 -35.23 -0.33 -5.95 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 1.07 7.57 -51.93 -0.39 0.68 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.39 9.94 7.08 -40.82 -0.29 9.65 16 34 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.10 1.73 7.06 -51.93 -0.37 1.37 16 36 H 0.11 2.05 6.94 -51.93 -0.36 1.69 16 37 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 39 H 0.41 1.49 8.59 -40.82 -0.35 1.14 16 40 H 0.41 1.51 8.93 -40.82 -0.36 1.15 16 41 H 0.10 0.89 4.45 -52.26 -0.23 0.66 16 42 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 370.23 15.07 5.58 5.58 Total: -1.00 -33.43 370.23 -6.50 -39.93 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -5.70 Total: 9.86 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -1.48 Total: 7.00 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.24 Total: -57.00 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.12 Total: -22.37 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.43 -6.50 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276787083.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.253 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds