Wall clock time and date at job start Tue Mar 31 2020 21:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47359 * 2 1 4 4 N 1.46493 * 109.47117 * 120.00360 * 2 1 3 5 5 C 1.36936 * 120.00051 * 274.72282 * 4 2 1 6 6 H 1.08001 * 120.00027 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00143 * 180.02562 * 5 4 2 8 8 N 1.31618 * 119.99971 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99976 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46794 * 89.99880 * 9 7 5 11 11 H 1.48493 * 109.47171 * 209.99574 * 9 7 5 12 12 H 1.48498 * 109.46988 * 330.00115 * 9 7 5 13 13 C 1.53007 * 109.47019 * 240.00192 * 2 1 3 14 14 H 1.09000 * 109.51116 * 64.89898 * 13 2 1 15 15 C 1.53292 * 109.51378 * 185.00331 * 13 2 1 16 16 N 1.47148 * 108.38675 * 172.22808 * 15 13 2 17 17 C 1.34778 * 120.98448 * 129.48502 * 16 15 13 18 18 O 1.21606 * 119.99905 * 353.13756 * 17 16 15 19 19 C 1.47287 * 119.99847 * 173.13746 * 17 16 15 20 20 C 1.36575 * 125.80398 * 172.61300 * 19 17 16 21 21 C 1.40067 * 106.92525 * 179.97438 * 20 19 17 22 22 C 1.36575 * 106.92639 * 0.02562 * 21 20 19 23 23 C 1.47290 * 125.80258 * 180.02562 * 22 21 20 24 24 N 1.34777 * 119.99671 * 179.97438 * 23 22 21 25 25 O 1.21607 * 120.00303 * 359.97438 * 23 22 21 26 26 O 1.34547 * 108.38646 * 359.76993 * 22 21 20 27 27 C 1.47154 * 118.03258 * 309.45979 * 16 15 13 28 28 C 1.53293 * 108.38435 * 50.53786 * 27 16 15 29 29 O 1.42957 * 109.22251 * 307.69906 * 28 27 16 30 30 H 1.09004 * 109.47192 * 59.99713 * 1 2 3 31 31 H 1.09001 * 109.47440 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47069 * 299.99885 * 1 2 3 33 33 H 0.97006 * 119.99984 * 94.99648 * 4 2 1 34 34 H 0.97003 * 119.99977 * 180.02562 * 8 7 5 35 35 H 1.09005 * 109.67797 * 291.95011 * 15 13 2 36 36 H 1.08995 * 109.68596 * 52.49825 * 15 13 2 37 37 H 1.08000 * 126.53917 * 359.92266 * 20 19 17 38 38 H 1.07995 * 126.53686 * 179.97438 * 21 20 19 39 39 H 0.97001 * 119.99903 * 359.97438 * 24 23 22 40 40 H 0.97000 * 120.00264 * 179.97438 * 24 23 22 41 41 H 1.09000 * 109.68045 * 170.25525 * 27 16 15 42 42 H 1.08999 * 109.68078 * 290.81105 * 27 16 15 43 43 H 1.09001 * 109.51244 * 67.62070 * 28 27 16 44 44 H 1.09002 * 109.51489 * 187.72108 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1545 -0.0062 2.3743 6 1 1.9022 1.0428 2.4216 7 6 2.6177 -0.6605 3.5075 8 7 2.9255 -1.9389 3.4497 9 14 2.8041 0.2734 5.1146 10 1 1.5380 0.1884 5.8861 11 1 3.9084 -0.3229 5.9084 12 1 3.1138 1.6969 4.8268 13 6 2.0400 -0.7212 -1.2493 14 1 1.7504 -0.1597 -2.1376 15 6 3.5677 -0.8319 -1.1889 16 7 4.0154 -1.6876 -2.2992 17 6 4.9965 -1.2870 -3.1319 18 8 5.4395 -0.1574 -3.0507 19 6 5.5321 -2.2174 -4.1403 20 6 6.4177 -1.8995 -5.1302 21 6 6.6567 -3.0734 -5.8560 22 6 5.9063 -4.0576 -5.2785 23 6 5.8460 -5.4632 -5.7146 24 7 5.0625 -6.3400 -5.0559 25 8 6.5031 -5.8325 -6.6688 26 8 5.2358 -3.5261 -4.2401 27 6 3.3605 -2.9938 -2.4731 28 6 1.8429 -2.7779 -2.4709 29 8 1.4750 -2.0332 -1.3074 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2489 -1.6319 1.1525 34 1 3.2489 -2.3962 4.2417 35 1 4.0116 0.1589 -1.2869 36 1 3.8664 -1.2761 -0.2395 37 1 6.8506 -0.9281 -5.3181 38 1 7.3091 -3.1798 -6.7099 39 1 4.5386 -6.0455 -4.2945 40 1 5.0225 -7.2656 -5.3433 41 1 3.6671 -3.4348 -3.4215 42 1 3.6384 -3.6558 -1.6529 43 1 1.5525 -2.2247 -3.3641 44 1 1.3377 -3.7438 -2.4607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276787083.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:12 Heat of formation + Delta-G solvation = -95.440705 kcal Electronic energy + Delta-G solvation = -29803.987663 eV Core-core repulsion = 25530.250736 eV Total energy + Delta-G solvation = -4273.736927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.08685 -41.41012 -40.37046 -39.64355 -37.15176 -35.99755 -35.03988 -34.21402 -34.15201 -32.03658 -31.28083 -30.12332 -29.02358 -26.29203 -25.57893 -24.98634 -23.78501 -22.96404 -21.84917 -21.29690 -21.04271 -19.51528 -19.27314 -18.71515 -17.99188 -17.93651 -17.70281 -17.17071 -16.80234 -16.29966 -16.15965 -15.88800 -15.78008 -15.49499 -15.39773 -15.08916 -14.75824 -14.57952 -14.38761 -14.26649 -14.21414 -13.94266 -13.46672 -13.08865 -12.87302 -12.76182 -12.56455 -12.46986 -12.17145 -11.95557 -11.79542 -11.68172 -11.63258 -11.34602 -11.23654 -11.08547 -10.92706 -10.91110 -10.08894 -9.67332 -8.93806 -7.88747 -5.15478 -0.60014 0.71212 1.02041 1.49820 1.50071 1.58174 1.64931 1.84686 1.94550 2.33965 2.59234 2.79340 3.15395 3.45712 3.61631 3.66332 3.80021 3.92948 3.94040 3.97332 4.09301 4.20971 4.27695 4.31633 4.45292 4.52234 4.63812 4.68759 4.78856 4.82145 4.85716 4.97994 5.04453 5.11422 5.16227 5.26132 5.36150 5.56617 5.64014 5.69981 6.04585 6.19084 6.25046 6.33508 6.67820 7.02041 7.40723 8.15904 8.41113 9.34338 Molecular weight = 337.15amu Principal moments of inertia in cm(-1) A = 0.016526 B = 0.002733 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.842235 B =10241.513482 C =10287.019532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.173 3.827 3 H 0.061 0.939 4 N -0.726 5.726 5 C -0.233 4.233 6 H 0.075 0.925 7 C -0.073 4.073 8 N -0.966 5.966 9 Si 0.965 3.035 10 H -0.290 1.290 11 H -0.299 1.299 12 H -0.271 1.271 13 C 0.091 3.909 14 H 0.080 0.920 15 C 0.095 3.905 16 N -0.600 5.600 17 C 0.596 3.404 18 O -0.549 6.549 19 C -0.048 4.048 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.058 4.058 23 C 0.612 3.388 24 N -0.818 5.818 25 O -0.552 6.552 26 O -0.141 6.141 27 C 0.061 3.939 28 C 0.045 3.955 29 O -0.380 6.380 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.037 0.963 33 H 0.377 0.623 34 H 0.248 0.752 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.180 0.820 38 H 0.186 0.814 39 H 0.420 0.580 40 H 0.423 0.577 41 H 0.127 0.873 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.193 -6.919 -21.373 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.064 3.936 3 H 0.079 0.921 4 N -0.367 5.367 5 C -0.365 4.365 6 H 0.093 0.907 7 C -0.266 4.266 8 N -0.617 5.617 9 Si 0.795 3.205 10 H -0.217 1.217 11 H -0.226 1.226 12 H -0.196 1.196 13 C 0.032 3.968 14 H 0.097 0.903 15 C -0.028 4.028 16 N -0.331 5.331 17 C 0.384 3.616 18 O -0.428 6.428 19 C -0.102 4.102 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.111 4.111 23 C 0.395 3.605 24 N -0.382 5.382 25 O -0.432 6.432 26 O -0.038 6.038 27 C -0.060 4.060 28 C -0.032 4.032 29 O -0.299 6.299 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.210 0.790 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.197 0.803 38 H 0.203 0.797 39 H 0.251 0.749 40 H 0.257 0.743 41 H 0.144 0.856 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.540 -6.502 -21.453 22.470 hybrid contribution 0.327 0.009 1.357 1.396 sum 1.868 -6.493 -20.097 21.202 Atomic orbital electron populations 1.22150 0.96931 1.01197 1.00474 1.20505 0.93767 0.94679 0.84619 0.92067 1.42516 1.77963 1.10419 1.05849 1.19601 1.34459 0.94016 0.88419 0.90679 1.25429 1.03330 0.96788 1.01026 1.69812 1.52847 1.09959 1.29090 0.85262 0.76664 0.78133 0.80449 1.21746 1.22640 1.19610 1.22647 0.90365 0.84913 0.98858 0.90255 1.22237 0.96030 0.96072 0.88425 1.48174 1.35745 1.20108 1.29087 1.17058 0.79467 0.85364 0.79692 1.90853 1.61264 1.19580 1.71144 1.22075 1.04408 0.82083 1.01631 1.22216 0.97084 1.01501 0.93641 1.22223 1.00381 0.90190 1.01840 1.22621 1.00831 0.95590 0.92102 1.16572 0.79684 0.82212 0.82021 1.43580 1.46246 1.13595 1.34776 1.90922 1.45685 1.77631 1.28971 1.84172 1.55131 1.21609 1.42885 1.23062 0.94437 0.83452 1.05028 1.23209 0.92852 0.98695 0.88470 1.88081 1.70994 1.26952 1.43876 0.91470 0.93465 0.94376 0.78966 0.94310 0.89346 0.91299 0.80301 0.79717 0.74867 0.74327 0.85559 0.89994 0.91609 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.30 71.98 0.67 -4.41 16 2 C 0.17 6.51 2.80 44.99 0.13 6.64 16 3 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 4 N -0.73 -35.08 4.24 -322.95 -1.37 -36.45 16 5 C -0.23 -12.55 9.93 84.03 0.83 -11.72 16 6 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 7 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 8 N -0.97 -58.18 13.06 21.65 0.28 -57.90 16 9 Si 0.96 45.94 29.55 68.60 2.03 47.96 16 10 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 11 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 13 C 0.09 2.86 2.57 30.69 0.08 2.94 16 14 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 15 C 0.09 3.19 5.84 86.35 0.50 3.70 16 16 N -0.60 -16.57 3.02 -821.41 -2.48 -19.05 16 17 C 0.60 16.99 7.68 86.62 0.67 17.65 16 18 O -0.55 -19.14 16.35 -4.05 -0.07 -19.21 16 19 C -0.05 -1.07 6.77 24.26 0.16 -0.91 16 20 C -0.12 -2.35 10.60 22.32 0.24 -2.11 16 21 C -0.13 -2.09 10.60 22.32 0.24 -1.86 16 22 C -0.06 -0.98 7.14 24.26 0.17 -0.80 16 23 C 0.61 9.79 8.08 86.62 0.70 10.49 16 24 N -0.82 -6.52 8.87 -175.99 -1.56 -8.08 16 25 O -0.55 -12.61 17.70 -4.05 -0.07 -12.68 16 26 O -0.14 -2.46 7.04 -7.34 -0.05 -2.51 16 27 C 0.06 1.25 6.25 86.35 0.54 1.79 16 28 C 0.04 0.88 6.98 72.08 0.50 1.39 16 29 O -0.38 -11.46 9.24 -148.98 -1.38 -12.83 16 30 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.05 1.71 7.57 -2.39 -0.02 1.69 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.38 19.87 7.08 -92.70 -0.66 19.21 16 34 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 35 H 0.09 3.15 7.06 -2.38 -0.02 3.14 16 36 H 0.07 2.83 6.94 -2.39 -0.02 2.81 16 37 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.19 2.42 8.06 -2.91 -0.02 2.39 16 39 H 0.42 1.75 8.59 -92.71 -0.80 0.95 16 40 H 0.42 1.96 8.93 -92.71 -0.83 1.13 16 41 H 0.13 1.90 4.45 -7.66 -0.03 1.86 16 42 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -73.70 370.23 0.01 -73.69 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -1.22 Total: 27.92 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 5.90 Total: 19.12 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -5.13 Total: -121.47 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -1.57 Total: -47.23 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -73.70 0.01 -73.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276787083.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.752 kcal (2) G-P(sol) polarization free energy of solvation -73.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds