Wall clock time and date at job start Tue Mar 31 2020 21:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09004 * 109.47528 * 2 1 4 4 C 1.50699 * 109.47372 * 120.00344 * 2 1 3 5 5 O 1.21286 * 120.00269 * 119.99807 * 4 2 1 6 6 N 1.34775 * 120.00099 * 299.99901 * 4 2 1 7 7 C 1.46493 * 120.00236 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.47189 * 180.02562 * 7 6 4 9 9 H 1.08995 * 112.74577 * 75.76776 * 8 7 6 10 10 C 1.53518 * 113.47492 * 206.61900 * 8 7 6 11 11 C 1.53516 * 83.57214 * 140.78601 * 10 8 7 12 12 N 1.47480 * 113.47155 * 304.99938 * 8 7 6 13 13 C 1.46896 * 110.99971 * 106.53357 * 12 8 7 14 14 C 1.50705 * 109.47030 * 189.99904 * 13 12 8 15 15 O 1.21291 * 119.99740 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99866 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99852 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00121 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99538 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00496 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99643 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47033 * 89.99435 * 21 19 17 23 23 H 1.48489 * 109.47230 * 209.99858 * 21 19 17 24 24 H 1.48504 * 109.46596 * 330.00079 * 21 19 17 25 25 C 1.53006 * 109.47136 * 240.00421 * 2 1 3 26 26 F 1.39901 * 109.46680 * 299.99672 * 25 2 1 27 27 F 1.39897 * 109.47308 * 59.99778 * 25 2 1 28 28 F 1.39901 * 109.47182 * 179.97438 * 25 2 1 29 29 H 1.09000 * 109.47650 * 59.99643 * 1 2 3 30 30 H 1.08995 * 109.47473 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47494 * 299.99871 * 1 2 3 32 32 H 0.97005 * 119.99768 * 0.02562 * 6 4 2 33 33 H 1.08997 * 109.47341 * 59.99745 * 7 6 4 34 34 H 1.09004 * 109.47562 * 299.99900 * 7 6 4 35 35 H 1.08991 * 114.17033 * 254.43280 * 10 8 7 36 36 H 1.08997 * 114.17009 * 27.14359 * 10 8 7 37 37 H 1.09002 * 113.47749 * 219.20372 * 11 10 8 38 38 H 1.08998 * 113.52519 * 88.75342 * 11 10 8 39 39 H 1.09001 * 109.46866 * 309.99223 * 13 12 8 40 40 H 1.09000 * 109.47551 * 69.99530 * 13 12 8 41 41 H 0.97003 * 119.99893 * 359.97438 * 16 14 13 42 42 H 0.96999 * 119.99888 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 2.1946 -0.9410 3.6506 8 6 1.6842 -0.2201 4.8999 9 1 0.6317 -0.4193 5.1010 10 6 2.5886 -0.4072 6.1263 11 6 2.2555 1.0694 6.3821 12 7 2.0275 1.2138 4.9321 13 6 0.8455 2.0442 4.6653 14 6 1.2723 3.4753 4.4628 15 8 2.4456 3.7741 4.5343 16 7 0.3501 4.4232 4.2033 17 6 0.7383 5.7252 4.0197 18 1 1.7830 5.9913 4.0833 19 6 -0.2126 6.7024 3.7516 20 7 -1.4838 6.3786 3.6737 21 14 0.3163 8.4766 3.5020 22 1 0.6008 8.7106 2.0635 23 1 -0.7718 9.3845 3.9455 24 1 1.5405 8.7448 4.2987 25 6 2.0399 -0.7212 -1.2493 26 9 1.5736 -2.0402 -1.2493 27 9 1.5736 -0.0617 -2.3916 28 9 3.4389 -0.7207 -1.2496 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.1487 0.5384 2.5436 33 1 3.2846 -0.9415 3.6507 34 1 1.8309 -1.9686 3.6505 35 1 2.1891 -1.0910 6.8752 36 1 3.6351 -0.5933 5.8849 37 1 3.1032 1.6486 6.7482 38 1 1.3558 1.2152 6.9798 39 1 0.3439 1.6841 3.7670 40 1 0.1614 1.9853 5.5118 41 1 -0.5884 4.1842 4.1465 42 1 -2.1474 7.0607 3.4862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276898372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:17 Heat of formation + Delta-G solvation = -189.409362 kcal Electronic energy + Delta-G solvation = -30154.407149 eV Core-core repulsion = 25334.738695 eV Total energy + Delta-G solvation = -4819.668454 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.16265 -47.67773 -47.56990 -40.67653 -39.64434 -37.85003 -34.80113 -34.19828 -33.96859 -31.47037 -30.76273 -28.50647 -26.65559 -25.92544 -24.13749 -23.85183 -22.68501 -20.65931 -19.83345 -19.38057 -18.83468 -18.53645 -17.99581 -17.82958 -16.87544 -16.26545 -16.11253 -15.73128 -15.38883 -15.09825 -14.74042 -14.54549 -14.44458 -14.21715 -14.02837 -13.97421 -13.83554 -13.76461 -13.71921 -13.57555 -13.37631 -12.91064 -12.67724 -12.53181 -12.27110 -12.03152 -11.68278 -11.65828 -11.60906 -11.40717 -11.14219 -10.97285 -10.66241 -10.44875 -10.28318 -10.07091 -9.57331 -9.22212 -8.93690 -8.31200 -8.04120 -6.49170 -3.90084 2.33724 2.40155 2.89972 3.12672 3.22327 3.27715 3.54795 3.76171 3.79029 3.88400 4.00518 4.16397 4.33254 4.50227 4.60478 4.63388 4.76768 4.87300 4.89757 5.08741 5.16908 5.20881 5.27616 5.30732 5.33795 5.51353 5.55313 5.65682 5.67286 5.76286 5.86523 6.07720 6.12692 6.22029 6.41808 7.04796 7.22001 7.48383 7.92140 7.98067 8.53574 9.11170 9.45661 9.97739 10.68398 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.009489 B = 0.003497 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.213749 B = 8004.593252 C =10218.046060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.167 4.167 3 H 0.143 0.857 4 C 0.524 3.476 5 O -0.527 6.527 6 N -0.710 5.710 7 C 0.141 3.859 8 C 0.002 3.998 9 H 0.084 0.916 10 C -0.132 4.132 11 C 0.005 3.995 12 N -0.433 5.433 13 C 0.007 3.993 14 C 0.443 3.557 15 O -0.571 6.571 16 N -0.565 5.565 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.024 3.976 20 N -0.902 5.902 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.475 3.525 26 F -0.173 7.173 27 F -0.181 7.181 28 F -0.173 7.173 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.404 0.596 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.391 0.609 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 -15.582 -2.277 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.189 4.189 3 H 0.161 0.839 4 C 0.308 3.692 5 O -0.403 6.403 6 N -0.362 5.362 7 C 0.018 3.982 8 C -0.108 4.108 9 H 0.102 0.898 10 C -0.171 4.171 11 C -0.124 4.124 12 N -0.156 5.156 13 C -0.125 4.125 14 C 0.228 3.772 15 O -0.454 6.454 16 N -0.202 5.202 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.178 4.178 20 N -0.543 5.543 21 Si 0.756 3.244 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C 0.420 3.580 26 F -0.155 7.155 27 F -0.162 7.162 28 F -0.154 7.154 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.240 0.760 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.224 0.776 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.170 -15.677 -2.809 15.970 hybrid contribution -1.457 1.045 0.117 1.797 sum -0.288 -14.633 -2.692 14.881 Atomic orbital electron populations 1.21847 0.89148 1.04492 1.05307 1.22667 1.01498 1.03500 0.91264 0.83881 1.19681 0.80629 0.84563 0.84306 1.90797 1.37227 1.25784 1.86511 1.45773 1.53394 1.32050 1.05006 1.21390 1.00191 0.95001 0.81657 1.23803 0.99489 0.92119 0.95365 0.89834 1.23156 1.00659 0.97042 0.96209 1.23756 1.02268 0.95932 0.90447 1.68874 1.29908 1.01297 1.15490 1.22578 0.92891 0.95690 1.01373 1.19602 0.86888 0.85827 0.84907 1.90549 1.17550 1.81793 1.55511 1.41874 1.08637 1.07363 1.62371 1.19688 0.95309 0.82623 1.45258 0.87952 1.25240 0.94823 1.00441 0.97273 1.69599 1.00383 1.35095 1.49255 0.85876 0.78271 0.81551 0.78737 1.20350 1.20913 1.19412 1.19732 0.75982 0.77715 0.84582 1.93192 1.88314 1.37292 1.96687 1.93188 1.88566 1.80836 1.53650 1.93222 1.29201 1.96332 1.96661 0.89648 0.90606 0.89639 0.75968 0.90405 0.90921 0.90345 0.88475 0.89104 0.91307 0.90366 0.91930 0.77621 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.85 37.15 0.33 -0.92 16 2 C -0.17 -1.79 2.71 -91.77 -0.25 -2.04 16 3 H 0.14 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.52 6.80 6.92 -10.99 -0.08 6.72 16 5 O -0.53 -8.53 14.83 5.55 0.08 -8.44 16 6 N -0.71 -8.25 5.36 -60.29 -0.32 -8.58 16 7 C 0.14 1.55 5.81 -4.04 -0.02 1.53 16 8 C 0.00 0.03 3.23 -71.43 -0.23 -0.21 16 9 H 0.08 0.73 7.91 -51.93 -0.41 0.32 16 10 C -0.13 -1.24 8.00 -26.20 -0.21 -1.45 16 11 C 0.00 0.06 7.71 -7.54 -0.06 0.00 16 12 N -0.43 -6.19 5.39 -237.93 -1.28 -7.47 16 13 C 0.01 0.11 5.05 -4.98 -0.03 0.08 16 14 C 0.44 9.70 7.85 -10.98 -0.09 9.62 16 15 O -0.57 -14.91 16.01 5.55 0.09 -14.82 16 16 N -0.57 -13.36 5.29 -10.96 -0.06 -13.42 16 17 C -0.30 -7.98 9.68 -14.93 -0.14 -8.13 16 18 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -23.44 13.05 55.50 0.72 -22.72 16 21 Si 0.93 20.39 29.55 -169.99 -5.02 15.37 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 C 0.47 5.87 2.42 37.16 0.09 5.96 16 26 F -0.17 -2.30 15.88 2.25 0.04 -2.27 16 27 F -0.18 -2.10 16.80 2.25 0.04 -2.06 16 28 F -0.17 -2.48 16.40 2.25 0.04 -2.44 16 29 H 0.08 0.63 7.80 -51.93 -0.41 0.23 16 30 H 0.07 0.61 7.80 -51.93 -0.41 0.21 16 31 H 0.08 0.62 7.56 -51.93 -0.39 0.23 16 32 H 0.40 4.45 5.64 -40.82 -0.23 4.22 16 33 H 0.08 0.96 7.88 -51.93 -0.41 0.56 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.92 7.94 -51.93 -0.41 0.51 16 37 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 0.78 7.42 -51.93 -0.39 0.39 16 39 H 0.08 1.00 6.27 -51.93 -0.33 0.67 16 40 H 0.06 0.85 7.30 -51.93 -0.38 0.47 16 41 H 0.39 8.74 7.90 -40.82 -0.32 8.42 16 42 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -32.96 363.06 -6.27 -39.23 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -5.28 Total: 10.47 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -0.78 Total: 11.69 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.94 Total: -52.19 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.17 Total: -23.27 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 0.11 Total: -6.77 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.96 -6.27 -39.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276898372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.181 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds