Wall clock time and date at job start Tue Mar 31 2020 21:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09004 * 109.47528 * 2 1 4 4 C 1.50699 * 109.47372 * 120.00344 * 2 1 3 5 5 O 1.21286 * 120.00269 * 119.99807 * 4 2 1 6 6 N 1.34775 * 120.00099 * 299.99901 * 4 2 1 7 7 C 1.46493 * 120.00236 * 179.97438 * 6 4 2 8 8 C 1.53006 * 109.47189 * 180.02562 * 7 6 4 9 9 H 1.08995 * 112.74577 * 75.76776 * 8 7 6 10 10 C 1.53518 * 113.47492 * 206.61900 * 8 7 6 11 11 C 1.53516 * 83.57214 * 140.78601 * 10 8 7 12 12 N 1.47480 * 113.47155 * 304.99938 * 8 7 6 13 13 C 1.46896 * 110.99971 * 106.53357 * 12 8 7 14 14 C 1.50705 * 109.47030 * 189.99904 * 13 12 8 15 15 O 1.21291 * 119.99740 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99866 * 180.02562 * 14 13 12 17 17 C 1.37101 * 119.99852 * 179.97438 * 16 14 13 18 18 H 1.08000 * 120.00121 * 359.97438 * 17 16 14 19 19 C 1.38956 * 119.99538 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00496 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99643 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47033 * 89.99435 * 21 19 17 23 23 H 1.48489 * 109.47230 * 209.99858 * 21 19 17 24 24 H 1.48504 * 109.46596 * 330.00079 * 21 19 17 25 25 C 1.53006 * 109.47136 * 240.00421 * 2 1 3 26 26 F 1.39901 * 109.46680 * 299.99672 * 25 2 1 27 27 F 1.39897 * 109.47308 * 59.99778 * 25 2 1 28 28 F 1.39901 * 109.47182 * 179.97438 * 25 2 1 29 29 H 1.09000 * 109.47650 * 59.99643 * 1 2 3 30 30 H 1.08995 * 109.47473 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47494 * 299.99871 * 1 2 3 32 32 H 0.97005 * 119.99768 * 0.02562 * 6 4 2 33 33 H 1.08997 * 109.47341 * 59.99745 * 7 6 4 34 34 H 1.09004 * 109.47562 * 299.99900 * 7 6 4 35 35 H 1.08991 * 114.17033 * 254.43280 * 10 8 7 36 36 H 1.08997 * 114.17009 * 27.14359 * 10 8 7 37 37 H 1.09002 * 113.47749 * 219.20372 * 11 10 8 38 38 H 1.08998 * 113.52519 * 88.75342 * 11 10 8 39 39 H 1.09001 * 109.46866 * 309.99223 * 13 12 8 40 40 H 1.09000 * 109.47551 * 69.99530 * 13 12 8 41 41 H 0.97003 * 119.99893 * 359.97438 * 16 14 13 42 42 H 0.96999 * 119.99888 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 2.1946 -0.9410 3.6506 8 6 1.6842 -0.2201 4.8999 9 1 0.6317 -0.4193 5.1010 10 6 2.5886 -0.4072 6.1263 11 6 2.2555 1.0694 6.3821 12 7 2.0275 1.2138 4.9321 13 6 0.8455 2.0442 4.6653 14 6 1.2723 3.4753 4.4628 15 8 2.4456 3.7741 4.5343 16 7 0.3501 4.4232 4.2033 17 6 0.7383 5.7252 4.0197 18 1 1.7830 5.9913 4.0833 19 6 -0.2126 6.7024 3.7516 20 7 -1.4838 6.3786 3.6737 21 14 0.3163 8.4766 3.5020 22 1 0.6008 8.7106 2.0635 23 1 -0.7718 9.3845 3.9455 24 1 1.5405 8.7448 4.2987 25 6 2.0399 -0.7212 -1.2493 26 9 1.5736 -2.0402 -1.2493 27 9 1.5736 -0.0617 -2.3916 28 9 3.4389 -0.7207 -1.2496 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.1487 0.5384 2.5436 33 1 3.2846 -0.9415 3.6507 34 1 1.8309 -1.9686 3.6505 35 1 2.1891 -1.0910 6.8752 36 1 3.6351 -0.5933 5.8849 37 1 3.1032 1.6486 6.7482 38 1 1.3558 1.2152 6.9798 39 1 0.3439 1.6841 3.7670 40 1 0.1614 1.9853 5.5118 41 1 -0.5884 4.1842 4.1465 42 1 -2.1474 7.0607 3.4862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276898372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:16 Heat of formation + Delta-G solvation = -214.984206 kcal Electronic energy + Delta-G solvation = -30155.516158 eV Core-core repulsion = 25334.738695 eV Total energy + Delta-G solvation = -4820.777462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.16025 -48.66106 -48.60820 -41.67470 -40.69647 -39.55325 -35.94338 -35.77103 -35.01890 -33.29266 -32.02378 -29.43445 -27.51957 -27.46401 -25.34330 -25.05314 -23.59222 -21.63460 -21.05812 -20.70504 -19.88852 -19.80099 -19.53295 -18.79172 -17.84322 -17.68601 -17.21047 -16.86746 -16.48847 -16.38547 -16.25631 -15.67688 -15.59266 -15.44200 -15.30634 -15.03624 -15.03212 -14.80375 -14.74220 -14.61962 -14.36215 -14.12604 -13.88855 -13.52946 -13.50581 -13.10099 -12.98167 -12.90663 -12.59591 -12.46737 -12.41353 -12.32601 -12.13731 -11.94142 -11.63990 -11.47074 -11.06859 -10.35325 -10.18449 -9.97396 -9.69602 -8.44706 -5.92168 1.35119 1.38399 1.43359 1.47391 1.54392 1.96908 2.09299 2.29701 2.60922 2.77558 2.96417 3.06389 3.21814 3.37809 3.56059 3.61177 3.77283 3.81679 3.95372 4.04987 4.16011 4.29228 4.36434 4.41921 4.52328 4.57547 4.63487 4.67332 4.85366 4.89071 5.02466 5.05864 5.20940 5.27582 5.43131 5.45397 5.95151 6.13583 6.27258 6.64356 6.96172 7.17062 7.60795 8.18030 8.72239 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.009489 B = 0.003497 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.213749 B = 8004.593252 C =10218.046060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.162 4.162 3 H 0.154 0.846 4 C 0.521 3.479 5 O -0.564 6.564 6 N -0.703 5.703 7 C 0.139 3.861 8 C 0.016 3.984 9 H 0.114 0.886 10 C -0.115 4.115 11 C -0.004 4.004 12 N -0.470 5.470 13 C 0.020 3.980 14 C 0.441 3.559 15 O -0.619 6.619 16 N -0.573 5.573 17 C -0.330 4.330 18 H 0.074 0.926 19 C -0.007 4.007 20 N -0.917 5.917 21 Si 0.985 3.015 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.276 1.276 25 C 0.470 3.530 26 F -0.180 7.180 27 F -0.177 7.177 28 F -0.188 7.188 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.408 0.592 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.397 0.603 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.196 -16.289 -1.830 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 H 0.171 0.829 4 C 0.306 3.694 5 O -0.443 6.443 6 N -0.355 5.355 7 C 0.016 3.984 8 C -0.094 4.094 9 H 0.131 0.869 10 C -0.153 4.153 11 C -0.133 4.133 12 N -0.193 5.193 13 C -0.111 4.111 14 C 0.229 3.771 15 O -0.504 6.504 16 N -0.211 5.211 17 C -0.460 4.460 18 H 0.092 0.908 19 C -0.207 4.207 20 N -0.558 5.558 21 Si 0.809 3.191 22 H -0.197 1.197 23 H -0.196 1.196 24 H -0.202 1.202 25 C 0.416 3.584 26 F -0.161 7.161 27 F -0.158 7.158 28 F -0.170 7.170 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.245 0.755 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.231 0.769 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.582 -16.390 -2.350 16.567 hybrid contribution -0.867 1.231 -0.007 1.505 sum -1.449 -15.159 -2.357 15.409 Atomic orbital electron populations 1.21919 0.86970 1.05078 1.06564 1.22719 1.03196 1.03239 0.89324 0.82859 1.20020 0.80051 0.84159 0.85162 1.90779 1.38958 1.27536 1.87059 1.45774 1.52855 1.31915 1.04909 1.21467 0.99226 0.95969 0.81748 1.23860 1.01242 0.89125 0.95146 0.86881 1.23099 1.00468 0.95385 0.96319 1.23847 1.02044 0.97732 0.89669 1.68823 1.30066 1.03526 1.16877 1.22467 0.93790 0.91125 1.03762 1.20798 0.85884 0.88159 0.82290 1.90520 1.19716 1.83269 1.56943 1.41914 1.09231 1.06906 1.63083 1.19573 0.94394 0.84701 1.47336 0.90791 1.25880 0.94814 1.03479 0.96562 1.69642 1.00801 1.36215 1.49157 0.85047 0.77834 0.77550 0.78661 1.19743 1.19644 1.20153 1.20010 0.75309 0.77672 0.85428 1.93173 1.88280 1.37921 1.96765 1.93192 1.88387 1.80648 1.53563 1.93188 1.30620 1.96397 1.96780 0.88600 0.90373 0.88172 0.75481 0.92327 0.89332 0.87052 0.89080 0.91899 0.89765 0.87431 0.89484 0.76903 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.85 71.98 0.64 -1.48 16 2 C -0.16 -3.29 2.71 -11.54 -0.03 -3.33 16 3 H 0.15 2.77 8.14 -2.38 -0.02 2.75 16 4 C 0.52 12.98 6.92 87.66 0.61 13.58 16 5 O -0.56 -18.11 14.83 -3.05 -0.05 -18.15 16 6 N -0.70 -15.01 5.36 -463.06 -2.48 -17.49 16 7 C 0.14 2.76 5.81 86.38 0.50 3.26 16 8 C 0.02 0.27 3.23 42.19 0.14 0.41 16 9 H 0.11 1.39 7.91 -2.39 -0.02 1.37 16 10 C -0.11 -1.82 8.00 30.94 0.25 -1.57 16 11 C 0.00 -0.10 7.71 83.57 0.64 0.55 16 12 N -0.47 -12.59 5.39 -906.67 -4.88 -17.47 16 13 C 0.02 0.57 5.05 85.56 0.43 1.01 16 14 C 0.44 19.26 7.85 87.66 0.69 19.94 16 15 O -0.62 -33.07 16.01 -3.06 -0.05 -33.12 16 16 N -0.57 -27.12 5.29 -306.98 -1.62 -28.74 16 17 C -0.33 -17.90 9.68 84.04 0.81 -17.09 16 18 H 0.07 4.36 7.16 -2.91 -0.02 4.34 16 19 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 20 N -0.92 -46.85 13.05 21.66 0.28 -46.57 16 21 Si 0.98 41.56 29.55 68.60 2.03 43.58 16 22 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.47 11.39 2.42 71.98 0.17 11.56 16 26 F -0.18 -4.70 15.88 44.97 0.71 -3.98 16 27 F -0.18 -3.94 16.80 44.97 0.76 -3.19 16 28 F -0.19 -5.45 16.40 44.97 0.74 -4.72 16 29 H 0.10 1.20 7.80 -2.39 -0.02 1.18 16 30 H 0.08 1.10 7.80 -2.39 -0.02 1.08 16 31 H 0.10 1.15 7.56 -2.39 -0.02 1.13 16 32 H 0.41 7.95 5.64 -92.70 -0.52 7.43 16 33 H 0.06 1.40 7.88 -2.39 -0.02 1.39 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.58 7.94 -2.39 -0.02 1.56 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.08 1.67 7.42 -2.39 -0.02 1.65 16 39 H 0.11 2.38 6.27 -2.39 -0.01 2.37 16 40 H 0.09 2.07 7.30 -2.39 -0.02 2.05 16 41 H 0.40 17.48 7.90 -92.71 -0.73 16.75 16 42 H 0.28 13.32 8.31 -92.71 -0.77 12.55 16 Total: -1.00 -73.39 363.06 0.59 -72.80 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: -0.17 Total: 30.11 kcal Atomic # 6 Polarization: 21.62 SS G_CDS: 5.32 Total: 26.94 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -8.70 Total: -110.28 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -0.09 Total: -51.27 kcal Atomic # 9 Polarization: -14.10 SS G_CDS: 2.21 Total: -11.89 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -73.39 0.59 -72.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276898372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.184 kcal (2) G-P(sol) polarization free energy of solvation -73.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds