Wall clock time and date at job start Tue Mar 31 2020 21:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50701 * 109.47180 * 239.99722 * 2 1 3 5 5 O 1.21280 * 119.99781 * 239.99561 * 4 2 1 6 6 N 1.34771 * 119.99622 * 60.00237 * 4 2 1 7 7 C 1.46505 * 119.99622 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 6 4 9 9 H 1.08998 * 112.74913 * 75.76886 * 8 7 6 10 10 C 1.53515 * 113.48075 * 206.62035 * 8 7 6 11 11 C 1.53509 * 83.57552 * 140.78949 * 10 8 7 12 12 N 1.47474 * 87.93422 * 333.97813 * 11 10 8 13 13 C 1.46898 * 110.99908 * 138.70782 * 12 11 10 14 14 C 1.50700 * 109.47505 * 94.02870 * 13 12 11 15 15 O 1.21296 * 119.99887 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00338 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00106 * 179.97438 * 16 14 13 18 18 H 1.07996 * 119.99741 * 359.97438 * 17 16 14 19 19 C 1.38950 * 119.99654 * 179.97438 * 17 16 14 20 20 N 1.31419 * 119.99891 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00395 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47197 * 89.99742 * 21 19 17 23 23 H 1.48502 * 109.47371 * 209.99367 * 21 19 17 24 24 H 1.48502 * 109.47124 * 329.99844 * 21 19 17 25 25 C 1.52997 * 109.47127 * 119.99574 * 2 1 3 26 26 F 1.39905 * 109.47157 * 180.02562 * 25 2 1 27 27 F 1.39897 * 109.47422 * 300.00196 * 25 2 1 28 28 F 1.39900 * 109.47367 * 60.00290 * 25 2 1 29 29 H 1.08998 * 109.46505 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46884 * 299.99674 * 1 2 3 31 31 H 1.08996 * 109.47129 * 60.00751 * 1 2 3 32 32 H 0.96996 * 120.00772 * 359.97438 * 6 4 2 33 33 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 34 34 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 35 35 H 1.08999 * 114.17015 * 254.43937 * 10 8 7 36 36 H 1.08998 * 114.16479 * 27.14145 * 10 8 7 37 37 H 1.08998 * 113.47298 * 219.20710 * 11 10 8 38 38 H 1.09002 * 113.53057 * 88.75282 * 11 10 8 39 39 H 1.09007 * 109.47013 * 214.02616 * 13 12 11 40 40 H 1.08998 * 109.47090 * 334.02359 * 13 12 11 41 41 H 0.97005 * 119.99595 * 359.97438 * 16 14 13 42 42 H 0.96998 * 119.99863 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1957 -0.9404 -3.6506 8 6 1.6851 -0.2196 -4.8999 9 1 2.2230 0.7067 -5.1015 10 6 1.5601 -1.1349 -6.1260 11 6 0.2784 -0.3296 -6.3815 12 7 0.2187 -0.0662 -4.9317 13 6 -0.1711 1.3248 -4.6650 14 6 -1.6626 1.3986 -4.4620 15 8 -2.3348 0.3914 -4.5329 16 7 -2.2496 2.5836 -4.2026 17 6 -3.6065 2.6507 -4.0184 18 1 -4.2050 1.7540 -4.0816 19 6 -4.2116 3.8725 -3.7504 20 7 -5.5122 3.9368 -3.5733 21 14 -3.1765 5.4237 -3.6418 22 1 -3.0784 6.0484 -4.9855 23 1 -3.8118 6.3777 -2.6977 24 1 -1.8164 5.0781 -3.1561 25 6 2.0401 -0.7211 1.2493 26 9 3.4391 -0.7206 1.2496 27 9 1.5737 -0.0617 2.3915 28 9 1.5738 -2.0402 1.2494 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.1489 0.5384 -2.5436 33 1 3.2857 -0.9399 -3.6505 34 1 1.8328 -1.9682 -3.6508 35 1 2.3376 -0.9859 -6.8752 36 1 1.3876 -2.1836 -5.8842 37 1 -0.5499 -0.9364 -6.7471 38 1 0.4399 0.5673 -6.9795 39 1 0.3357 1.6784 -3.7670 40 1 0.1117 1.9501 -5.5118 41 1 -1.7120 3.3891 -4.1462 42 1 -5.9347 4.7898 -3.3866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276898374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:25 Heat of formation + Delta-G solvation = -181.855338 kcal Electronic energy + Delta-G solvation = -30328.365576 eV Core-core repulsion = 25509.024690 eV Total energy + Delta-G solvation = -4819.340887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.19002 -47.70820 -47.59508 -40.76020 -39.70517 -38.05190 -34.85353 -34.20486 -34.01998 -31.82035 -31.00592 -28.57421 -26.60256 -26.07670 -24.17804 -23.69407 -22.73293 -20.71386 -19.88412 -19.49214 -18.87762 -18.56431 -18.47085 -17.86140 -16.95270 -16.31900 -16.16430 -15.65990 -15.49873 -15.26740 -14.89674 -14.65465 -14.49436 -14.29573 -14.05620 -13.99100 -13.82657 -13.77400 -13.74426 -13.40317 -13.21953 -12.98221 -12.73650 -12.62793 -12.34297 -12.25516 -12.01861 -11.74527 -11.62759 -11.52415 -11.28011 -11.06650 -10.73793 -10.68602 -10.11516 -10.05403 -9.65012 -9.27981 -9.03864 -8.44933 -8.26303 -6.38455 -3.90502 2.26906 2.38207 2.85658 2.92558 2.98543 3.08046 3.52308 3.60837 3.68042 3.86184 3.96263 4.02110 4.25407 4.47087 4.52299 4.61708 4.66553 4.69719 4.80683 4.99604 5.11999 5.19780 5.22663 5.32418 5.37055 5.41228 5.46906 5.58976 5.69531 5.75060 5.85392 5.87932 6.00651 6.12957 6.31905 6.93121 7.15965 7.49424 7.86894 8.05717 8.51655 8.87607 9.33730 9.74265 10.74606 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.009663 B = 0.003747 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2897.064101 B = 7471.666164 C = 9579.840865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.164 4.164 3 H 0.138 0.862 4 C 0.524 3.476 5 O -0.525 6.525 6 N -0.711 5.711 7 C 0.141 3.859 8 C 0.003 3.997 9 H 0.084 0.916 10 C -0.132 4.132 11 C 0.004 3.996 12 N -0.433 5.433 13 C 0.003 3.997 14 C 0.452 3.548 15 O -0.552 6.552 16 N -0.592 5.592 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.043 3.957 20 N -0.879 5.879 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.271 1.271 25 C 0.474 3.526 26 F -0.176 7.176 27 F -0.181 7.181 28 F -0.171 7.171 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.403 0.597 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.369 0.631 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.789 -3.329 1.946 19.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 H 0.156 0.844 4 C 0.308 3.692 5 O -0.402 6.402 6 N -0.363 5.363 7 C 0.017 3.983 8 C -0.108 4.108 9 H 0.102 0.898 10 C -0.170 4.170 11 C -0.125 4.125 12 N -0.155 5.155 13 C -0.129 4.129 14 C 0.237 3.763 15 O -0.432 6.432 16 N -0.232 5.232 17 C -0.434 4.434 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.519 5.519 21 Si 0.706 3.294 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.196 1.196 25 C 0.419 3.581 26 F -0.157 7.157 27 F -0.162 7.162 28 F -0.152 7.152 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.239 0.761 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.201 0.799 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.184 -5.001 2.494 19.024 hybrid contribution 0.856 2.537 -0.161 2.683 sum 19.040 -2.463 2.332 19.340 Atomic orbital electron populations 1.21885 0.88439 1.05244 1.05480 1.22664 1.01946 1.02819 0.91225 0.84433 1.19708 0.80572 0.84654 0.84311 1.90800 1.37455 1.25411 1.86490 1.45767 1.53183 1.32327 1.05051 1.21396 0.98394 0.96892 0.81592 1.23809 0.91993 0.99471 0.95483 0.89843 1.23156 0.97926 0.99795 0.96146 1.23771 0.98617 0.99797 0.90265 1.68874 1.09904 1.21061 1.15686 1.22626 0.97422 0.91387 1.01484 1.19487 0.88055 0.84282 0.84500 1.90594 1.64362 1.34413 1.53864 1.42227 1.08647 1.07317 1.65013 1.19411 0.80702 0.97474 1.45824 0.86280 1.25034 0.95679 0.97780 0.97569 1.69619 1.08593 1.26432 1.47289 0.86695 0.80005 0.83814 0.78933 1.19674 1.20127 1.19613 1.19748 0.75758 0.77959 0.84606 1.93205 1.29428 1.96382 1.96694 1.93188 1.88557 1.80842 1.53642 1.93212 1.88257 1.37064 1.96656 0.90266 0.89716 0.89211 0.76089 0.90881 0.90313 0.90289 0.88381 0.88937 0.91276 0.90255 0.91806 0.79872 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.85 37.16 0.33 -1.25 16 2 C -0.16 -1.69 2.71 -91.77 -0.25 -1.94 16 3 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.52 6.53 6.92 -10.99 -0.08 6.45 16 5 O -0.53 -8.28 14.83 5.56 0.08 -8.20 16 6 N -0.71 -7.80 5.36 -60.29 -0.32 -8.13 16 7 C 0.14 1.46 5.82 -4.04 -0.02 1.43 16 8 C 0.00 0.03 3.23 -71.43 -0.23 -0.21 16 9 H 0.08 0.65 7.91 -51.93 -0.41 0.24 16 10 C -0.13 -1.15 8.00 -26.20 -0.21 -1.35 16 11 C 0.00 0.05 7.71 -7.55 -0.06 -0.01 16 12 N -0.43 -5.80 5.39 -237.95 -1.28 -7.08 16 13 C 0.00 0.05 5.05 -4.98 -0.03 0.02 16 14 C 0.45 9.36 7.85 -10.99 -0.09 9.27 16 15 O -0.55 -14.04 16.01 5.54 0.09 -13.95 16 16 N -0.59 -12.98 5.09 -10.96 -0.06 -13.04 16 17 C -0.31 -8.20 10.16 -14.93 -0.15 -8.35 16 18 H 0.12 3.71 7.39 -52.49 -0.39 3.32 16 19 C 0.04 1.11 5.50 -17.46 -0.10 1.02 16 20 N -0.88 -24.84 13.96 55.50 0.77 -24.06 16 21 Si 0.88 18.30 27.74 -169.99 -4.71 13.59 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.27 -5.00 6.52 56.52 0.37 -4.63 16 25 C 0.47 5.71 2.42 37.16 0.09 5.80 16 26 F -0.18 -2.30 16.40 2.25 0.04 -2.26 16 27 F -0.18 -2.05 16.80 2.25 0.04 -2.01 16 28 F -0.17 -2.38 15.88 2.25 0.04 -2.35 16 29 H 0.08 0.91 7.80 -51.93 -0.41 0.50 16 30 H 0.08 0.77 7.80 -51.93 -0.41 0.37 16 31 H 0.09 0.95 7.56 -51.93 -0.39 0.56 16 32 H 0.40 4.09 5.64 -40.82 -0.23 3.86 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.93 7.87 -51.93 -0.41 0.52 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.88 7.94 -51.93 -0.41 0.46 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 0.71 7.42 -51.93 -0.39 0.33 16 39 H 0.08 0.90 6.27 -51.92 -0.33 0.57 16 40 H 0.06 0.77 7.30 -51.93 -0.38 0.39 16 41 H 0.37 7.00 5.76 -40.82 -0.24 6.76 16 42 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 359.93 15.07 5.42 5.42 Total: -1.00 -34.05 359.93 -5.92 -39.97 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -5.24 Total: 11.22 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -0.79 Total: 10.89 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.89 Total: -52.31 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.17 Total: -22.15 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.11 Total: -6.62 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -4.71 Total: 13.59 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.05 -5.92 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276898374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.890 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds