Wall clock time and date at job start Tue Mar 31 2020 20:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87489 * 2 1 4 4 C 1.54322 * 110.01139 * 238.90192 * 2 1 3 5 5 H 1.08998 * 110.71695 * 336.85539 * 4 2 1 6 6 N 1.46491 * 110.72226 * 99.95489 * 4 2 1 7 7 C 1.34779 * 120.00267 * 205.00239 * 6 4 2 8 8 O 1.21284 * 119.99650 * 359.97438 * 7 6 4 9 9 C 1.50702 * 120.00081 * 179.97438 * 7 6 4 10 10 C 1.50704 * 109.46868 * 179.97438 * 9 7 6 11 11 O 1.21278 * 120.00023 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99731 * 180.02562 * 10 9 7 13 13 C 1.46501 * 119.99693 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46889 * 179.97438 * 13 12 10 15 15 F 1.39899 * 109.47091 * 60.00300 * 14 13 12 16 16 F 1.39905 * 109.47099 * 180.02562 * 14 13 12 17 17 F 1.39898 * 109.47338 * 299.99981 * 14 13 12 18 18 C 1.55282 * 103.00430 * 218.39875 * 4 2 1 19 19 C 1.54905 * 101.53029 * 35.35966 * 18 4 2 20 20 N 1.47023 * 109.88034 * 121.01704 * 2 1 3 21 21 C 1.36943 * 125.64628 * 298.52844 * 20 2 1 22 22 H 1.07999 * 119.99997 * 0.02562 * 21 20 2 23 23 C 1.38816 * 119.99832 * 180.02562 * 21 20 2 24 24 N 1.31616 * 120.00113 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99740 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47390 * 90.00350 * 25 23 21 27 27 H 1.48508 * 109.46962 * 210.00051 * 25 23 21 28 28 H 1.48501 * 109.47448 * 329.99970 * 25 23 21 29 29 H 1.09008 * 109.47282 * 300.43758 * 1 2 3 30 30 H 1.09003 * 109.47218 * 60.43851 * 1 2 3 31 31 H 1.09004 * 109.47562 * 180.44055 * 1 2 3 32 32 H 0.97002 * 120.00134 * 24.99518 * 6 4 2 33 33 H 1.08991 * 109.47438 * 299.99677 * 9 7 6 34 34 H 1.09003 * 109.47119 * 60.00268 * 9 7 6 35 35 H 0.96998 * 120.00099 * 359.97438 * 12 10 9 36 36 H 1.08991 * 109.47124 * 299.99815 * 13 12 10 37 37 H 1.09003 * 109.46772 * 60.00001 * 13 12 10 38 38 H 1.09001 * 110.95548 * 277.33125 * 18 4 2 39 39 H 1.08996 * 111.09853 * 153.45188 * 18 4 2 40 40 H 1.09002 * 110.36692 * 204.23391 * 19 18 4 41 41 H 1.08995 * 110.36664 * 82.02192 * 19 18 4 42 42 H 0.97000 * 120.00077 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2417 5 1 1.3092 -1.4449 -1.6196 6 7 2.4580 0.1969 -2.2863 7 6 2.4632 -0.1881 -3.5779 8 8 2.1372 -1.3178 -3.8753 9 6 2.8741 0.7852 -4.6527 10 6 2.7944 0.1109 -5.9981 11 8 2.4393 -1.0461 -6.0765 12 7 3.1186 0.7935 -7.1141 13 6 3.0405 0.1382 -8.4221 14 6 3.4577 1.1262 -9.5132 15 9 4.7708 1.5497 -9.2814 16 9 3.3826 0.5006 -10.7623 17 9 2.6008 2.2319 -9.4936 18 6 3.2918 -1.5137 -0.6899 19 6 2.8176 -1.8763 0.7395 20 7 2.0300 -0.7124 1.1849 21 6 1.8015 -0.3544 2.4868 22 1 1.2078 0.5197 2.7103 23 6 2.3331 -1.1149 3.5193 24 7 3.0570 -2.1799 3.2470 25 14 2.0209 -0.6269 5.2951 26 1 0.7821 -1.2871 5.7795 27 1 3.1694 -1.0528 6.1347 28 1 1.8632 0.8471 5.3831 29 1 -0.3634 0.5206 0.8861 30 1 -0.3634 0.5070 -0.8939 31 1 -0.3634 -1.0276 0.0079 32 1 2.7190 1.1004 -2.0485 33 1 2.2065 1.6465 -4.6374 34 1 3.8972 1.1152 -4.4722 35 1 3.4029 1.7187 -7.0514 36 1 3.7078 -0.7234 -8.4372 37 1 2.0173 -0.1914 -8.6028 38 1 4.1690 -0.8674 -0.6584 39 1 3.4909 -2.4114 -1.2751 40 1 3.6742 -2.0285 1.3961 41 1 2.1942 -2.7700 0.7170 42 1 3.4288 -2.7111 3.9684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316792782.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:15 Heat of formation + Delta-G solvation = -195.338440 kcal Electronic energy + Delta-G solvation = -29028.326005 eV Core-core repulsion = 24208.400447 eV Total energy + Delta-G solvation = -4819.925558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.71102 -48.21824 -48.19192 -40.49794 -39.10420 -37.43262 -35.40128 -33.96542 -32.25157 -31.36668 -30.36763 -29.31947 -28.29131 -24.80487 -24.01066 -23.82410 -21.65967 -20.57388 -20.14856 -19.66656 -19.18327 -18.96612 -18.53168 -17.43905 -16.77187 -16.34880 -16.25905 -15.90919 -15.54998 -15.21820 -14.98118 -14.72955 -14.63859 -14.61031 -14.33921 -14.32379 -14.03927 -13.78668 -13.57569 -13.50579 -13.23153 -12.78112 -12.47763 -12.31166 -12.14127 -11.84693 -11.56219 -11.14661 -10.87271 -10.83800 -10.55886 -10.46065 -10.31247 -10.10473 -9.77792 -9.75134 -9.59583 -9.39713 -8.68553 -8.58524 -6.88616 -5.66531 -3.09593 1.92215 2.27353 2.34302 2.80176 3.10786 3.33861 3.38652 3.42539 3.43797 3.45471 3.67861 4.19763 4.46635 4.58692 4.70037 4.80315 4.92312 5.01660 5.31559 5.41331 5.54907 5.61647 5.62753 5.83057 6.11922 6.24964 6.31136 6.35356 6.53586 6.60502 6.72158 6.81835 6.86940 7.11677 7.51733 7.61370 7.71074 7.80294 7.84627 8.33753 8.45014 9.19394 9.80400 10.44283 11.36638 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.038175 B = 0.001846 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.288298 B =15164.393317 C =15293.961368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.035 0.965 4 C 0.136 3.864 5 H 0.093 0.907 6 N -0.717 5.717 7 C 0.510 3.490 8 O -0.500 6.500 9 C -0.163 4.163 10 C 0.521 3.479 11 O -0.479 6.479 12 N -0.739 5.739 13 C 0.080 3.920 14 C 0.449 3.551 15 F -0.178 7.178 16 F -0.173 7.173 17 F -0.179 7.179 18 C -0.153 4.153 19 C 0.152 3.848 20 N -0.595 5.595 21 C -0.220 4.220 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.914 3.086 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.051 0.949 32 H 0.397 0.603 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.406 0.594 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.109 0.891 41 H 0.014 0.986 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 10.863 -24.493 26.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.053 0.947 4 C 0.032 3.968 5 H 0.111 0.889 6 N -0.369 5.369 7 C 0.293 3.707 8 O -0.373 6.373 9 C -0.206 4.206 10 C 0.305 3.695 11 O -0.348 6.348 12 N -0.397 5.397 13 C -0.045 4.045 14 C 0.394 3.606 15 F -0.160 7.160 16 F -0.155 7.155 17 F -0.160 7.160 18 C -0.192 4.192 19 C 0.027 3.973 20 N -0.321 5.321 21 C -0.348 4.348 22 H 0.095 0.905 23 C -0.207 4.207 24 N -0.569 5.569 25 Si 0.745 3.255 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.231 0.769 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.241 0.759 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.032 0.968 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.751 9.065 -24.546 26.225 hybrid contribution 0.145 1.419 0.791 1.631 sum 1.896 10.484 -23.754 26.034 Atomic orbital electron populations 1.22241 0.97925 1.01424 0.99888 1.20993 0.92557 0.94768 0.86970 0.94709 1.22159 0.97640 0.90767 0.86239 0.88851 1.46015 1.68893 1.16161 1.05862 1.19768 0.79241 0.88561 0.83164 1.90862 1.45438 1.19603 1.81407 1.21581 1.06300 1.00626 0.92132 1.20097 0.77530 0.87002 0.84833 1.90919 1.42328 1.15761 1.85812 1.45721 1.72451 1.16690 1.04824 1.22403 1.06563 0.94429 0.81144 1.20569 0.75216 0.81405 0.83397 1.93234 1.37383 1.91012 1.94339 1.93236 1.96024 1.82150 1.44075 1.93231 1.70243 1.55973 1.96553 1.23411 0.96740 0.99354 0.99740 1.21949 0.97352 0.88414 0.89603 1.44494 1.59069 1.28433 1.00060 1.19015 1.26990 1.08312 0.80521 0.90465 1.24799 1.00365 0.97434 0.98070 1.69795 1.38887 1.18048 1.30147 0.86081 0.77254 0.77692 0.84489 1.21656 1.21686 1.20733 0.92727 0.94366 0.92948 0.76937 0.85798 0.85753 0.75861 0.86704 0.86734 0.92029 0.91998 0.87341 0.96772 0.93685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.15 37.16 0.34 -2.50 16 2 C 0.16 3.03 3.48 -66.95 -0.23 2.79 16 3 H 0.04 0.65 7.72 -51.93 -0.40 0.25 16 4 C 0.14 2.42 2.85 -66.03 -0.19 2.23 16 5 H 0.09 1.83 7.26 -51.93 -0.38 1.46 16 6 N -0.72 -9.57 5.18 -51.97 -0.27 -9.84 16 7 C 0.51 6.97 7.82 -10.98 -0.09 6.89 16 8 O -0.50 -9.53 13.82 -18.96 -0.26 -9.79 16 9 C -0.16 -1.27 6.19 -29.03 -0.18 -1.45 16 10 C 0.52 5.22 7.82 -10.98 -0.09 5.13 16 11 O -0.48 -7.43 14.18 -18.96 -0.27 -7.70 16 12 N -0.74 -4.59 5.42 -60.30 -0.33 -4.91 16 13 C 0.08 0.47 5.64 -4.04 -0.02 0.44 16 14 C 0.45 2.53 3.11 37.16 0.12 2.65 16 15 F -0.18 -1.12 17.18 2.25 0.04 -1.08 16 16 F -0.17 -1.15 17.32 2.25 0.04 -1.11 16 17 F -0.18 -1.11 17.18 2.25 0.04 -1.07 16 18 C -0.15 -2.99 6.78 -24.52 -0.17 -3.15 16 19 C 0.15 3.67 5.88 -2.53 -0.01 3.66 16 20 N -0.60 -14.60 3.13 -162.58 -0.51 -15.11 16 21 C -0.22 -5.90 9.87 -15.06 -0.15 -6.05 16 22 H 0.08 2.00 7.83 -52.49 -0.41 1.58 16 23 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 24 N -0.92 -26.46 10.09 55.49 0.56 -25.90 16 25 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H 0.05 1.03 8.02 -51.92 -0.42 0.61 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.40 4.05 8.37 -40.82 -0.34 3.71 16 33 H 0.12 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.41 1.42 8.36 -40.82 -0.34 1.08 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.11 2.93 5.87 -51.93 -0.30 2.63 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -35.47 363.44 -6.80 -42.28 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.53 Total: 1.86 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -0.77 Total: 10.24 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.54 Total: -55.76 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.53 Total: -17.49 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.12 Total: -3.26 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.47 -6.80 -42.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316792782.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.062 kcal (2) G-P(sol) polarization free energy of solvation -35.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds