Wall clock time and date at job start Tue Mar 31 2020 20:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.87489 * 2 1 4 4 C 1.54322 * 110.01139 * 238.90192 * 2 1 3 5 5 H 1.08998 * 110.71695 * 336.85539 * 4 2 1 6 6 N 1.46491 * 110.72226 * 99.95489 * 4 2 1 7 7 C 1.34779 * 120.00267 * 205.00239 * 6 4 2 8 8 O 1.21284 * 119.99650 * 359.97438 * 7 6 4 9 9 C 1.50702 * 120.00081 * 179.97438 * 7 6 4 10 10 C 1.50704 * 109.46868 * 179.97438 * 9 7 6 11 11 O 1.21278 * 120.00023 * 359.97438 * 10 9 7 12 12 N 1.34777 * 119.99731 * 180.02562 * 10 9 7 13 13 C 1.46501 * 119.99693 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46889 * 179.97438 * 13 12 10 15 15 F 1.39899 * 109.47091 * 60.00300 * 14 13 12 16 16 F 1.39905 * 109.47099 * 180.02562 * 14 13 12 17 17 F 1.39898 * 109.47338 * 299.99981 * 14 13 12 18 18 C 1.55282 * 103.00430 * 218.39875 * 4 2 1 19 19 C 1.54905 * 101.53029 * 35.35966 * 18 4 2 20 20 N 1.47023 * 109.88034 * 121.01704 * 2 1 3 21 21 C 1.36943 * 125.64628 * 298.52844 * 20 2 1 22 22 H 1.07999 * 119.99997 * 0.02562 * 21 20 2 23 23 C 1.38816 * 119.99832 * 180.02562 * 21 20 2 24 24 N 1.31616 * 120.00113 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99740 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47390 * 90.00350 * 25 23 21 27 27 H 1.48508 * 109.46962 * 210.00051 * 25 23 21 28 28 H 1.48501 * 109.47448 * 329.99970 * 25 23 21 29 29 H 1.09008 * 109.47282 * 300.43758 * 1 2 3 30 30 H 1.09003 * 109.47218 * 60.43851 * 1 2 3 31 31 H 1.09004 * 109.47562 * 180.44055 * 1 2 3 32 32 H 0.97002 * 120.00134 * 24.99518 * 6 4 2 33 33 H 1.08991 * 109.47438 * 299.99677 * 9 7 6 34 34 H 1.09003 * 109.47119 * 60.00268 * 9 7 6 35 35 H 0.96998 * 120.00099 * 359.97438 * 12 10 9 36 36 H 1.08991 * 109.47124 * 299.99815 * 13 12 10 37 37 H 1.09003 * 109.46772 * 60.00001 * 13 12 10 38 38 H 1.09001 * 110.95548 * 277.33125 * 18 4 2 39 39 H 1.08996 * 111.09853 * 153.45188 * 18 4 2 40 40 H 1.09002 * 110.36692 * 204.23391 * 19 18 4 41 41 H 1.08995 * 110.36664 * 82.02192 * 19 18 4 42 42 H 0.97000 * 120.00077 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2417 5 1 1.3092 -1.4449 -1.6196 6 7 2.4580 0.1969 -2.2863 7 6 2.4632 -0.1881 -3.5779 8 8 2.1372 -1.3178 -3.8753 9 6 2.8741 0.7852 -4.6527 10 6 2.7944 0.1109 -5.9981 11 8 2.4393 -1.0461 -6.0765 12 7 3.1186 0.7935 -7.1141 13 6 3.0405 0.1382 -8.4221 14 6 3.4577 1.1262 -9.5132 15 9 4.7708 1.5497 -9.2814 16 9 3.3826 0.5006 -10.7623 17 9 2.6008 2.2319 -9.4936 18 6 3.2918 -1.5137 -0.6899 19 6 2.8176 -1.8763 0.7395 20 7 2.0300 -0.7124 1.1849 21 6 1.8015 -0.3544 2.4868 22 1 1.2078 0.5197 2.7103 23 6 2.3331 -1.1149 3.5193 24 7 3.0570 -2.1799 3.2470 25 14 2.0209 -0.6269 5.2951 26 1 0.7821 -1.2871 5.7795 27 1 3.1694 -1.0528 6.1347 28 1 1.8632 0.8471 5.3831 29 1 -0.3634 0.5206 0.8861 30 1 -0.3634 0.5070 -0.8939 31 1 -0.3634 -1.0276 0.0079 32 1 2.7190 1.1004 -2.0485 33 1 2.2065 1.6465 -4.6374 34 1 3.8972 1.1152 -4.4722 35 1 3.4029 1.7187 -7.0514 36 1 3.7078 -0.7234 -8.4372 37 1 2.0173 -0.1914 -8.6028 38 1 4.1690 -0.8674 -0.6584 39 1 3.4909 -2.4114 -1.2751 40 1 3.6742 -2.0285 1.3961 41 1 2.1942 -2.7700 0.7170 42 1 3.4288 -2.7111 3.9684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316792782.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:12 Heat of formation + Delta-G solvation = -221.108462 kcal Electronic energy + Delta-G solvation = -29029.443477 eV Core-core repulsion = 24208.400447 eV Total energy + Delta-G solvation = -4821.043030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.19539 -48.71327 -48.66986 -41.42462 -40.25278 -38.90281 -36.12037 -35.46646 -33.87164 -32.33161 -31.97338 -30.51514 -29.48931 -26.40676 -25.78331 -24.42509 -22.61522 -21.95274 -21.49254 -21.09967 -19.65850 -19.47941 -19.15842 -18.70382 -18.27881 -17.32314 -17.10173 -16.98154 -16.60021 -16.29619 -15.86014 -15.68034 -15.53513 -15.42745 -15.27119 -15.10016 -14.83193 -14.81652 -14.61478 -14.41713 -14.28549 -14.18975 -13.97160 -13.66890 -13.20630 -12.97350 -12.93727 -12.86186 -12.72667 -12.58114 -12.19576 -12.05731 -11.95252 -11.55186 -11.40788 -11.24547 -10.72180 -10.52303 -10.39889 -9.91311 -8.87862 -7.72854 -5.17964 1.37174 1.49417 1.51081 1.57273 1.59438 1.77517 1.78020 2.34865 2.55216 2.64859 2.96248 3.17366 3.37492 3.49527 3.63526 3.90873 3.98027 4.01121 4.12349 4.25840 4.33460 4.45464 4.48883 4.53098 4.66065 4.73199 4.84000 4.98364 5.06255 5.08731 5.18089 5.40332 5.52342 5.61992 5.70275 5.82312 6.30563 6.32544 6.69711 7.12908 7.14743 7.44941 7.81253 8.44922 9.28972 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.038175 B = 0.001846 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.288298 B =15164.393317 C =15293.961368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.151 3.849 3 H 0.059 0.941 4 C 0.154 3.846 5 H 0.072 0.928 6 N -0.703 5.703 7 C 0.505 3.495 8 O -0.558 6.558 9 C -0.149 4.149 10 C 0.519 3.481 11 O -0.543 6.543 12 N -0.720 5.720 13 C 0.079 3.921 14 C 0.460 3.540 15 F -0.180 7.180 16 F -0.179 7.179 17 F -0.179 7.179 18 C -0.138 4.138 19 C 0.156 3.844 20 N -0.614 5.614 21 C -0.223 4.223 22 H 0.087 0.913 23 C -0.073 4.073 24 N -0.952 5.952 25 Si 0.978 3.022 26 H -0.292 1.292 27 H -0.297 1.297 28 H -0.265 1.265 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.030 0.970 32 H 0.417 0.583 33 H 0.171 0.829 34 H 0.167 0.833 35 H 0.423 0.577 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.077 0.923 41 H -0.021 1.021 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.336 14.326 -25.737 29.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.045 3.955 3 H 0.077 0.923 4 C 0.047 3.953 5 H 0.090 0.910 6 N -0.357 5.357 7 C 0.291 3.709 8 O -0.435 6.435 9 C -0.191 4.191 10 C 0.305 3.695 11 O -0.417 6.417 12 N -0.378 5.378 13 C -0.047 4.047 14 C 0.405 3.595 15 F -0.161 7.161 16 F -0.160 7.160 17 F -0.161 7.161 18 C -0.177 4.177 19 C 0.030 3.970 20 N -0.339 5.339 21 C -0.352 4.352 22 H 0.105 0.895 23 C -0.265 4.265 24 N -0.602 5.602 25 Si 0.807 3.193 26 H -0.220 1.220 27 H -0.224 1.224 28 H -0.189 1.189 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.255 0.745 33 H 0.188 0.812 34 H 0.185 0.815 35 H 0.261 0.739 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.095 0.905 41 H -0.003 1.003 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.894 12.655 -25.838 28.833 hybrid contribution 0.090 0.372 1.083 1.149 sum 1.984 13.027 -24.755 28.044 Atomic orbital electron populations 1.22137 0.96820 1.00444 1.01273 1.21221 0.93304 0.95339 0.85675 0.92314 1.21636 0.95888 0.90988 0.86758 0.91012 1.45768 1.68610 1.16258 1.05057 1.20761 0.77609 0.88751 0.83785 1.90863 1.47818 1.22578 1.82239 1.21627 1.09688 0.99574 0.88196 1.20512 0.76452 0.86315 0.86218 1.90916 1.45526 1.18576 1.86732 1.45504 1.70935 1.17220 1.04144 1.22421 1.06757 0.94502 0.80974 1.20399 0.74996 0.81101 0.83003 1.93234 1.37554 1.91016 1.94318 1.93228 1.96042 1.82288 1.44466 1.93232 1.70285 1.56028 1.96537 1.23199 0.98000 0.99894 0.96652 1.21663 0.95651 0.87750 0.91913 1.44743 1.59519 1.28713 1.00960 1.19407 1.25972 1.08143 0.81721 0.89489 1.25637 1.00975 0.97847 1.02003 1.70052 1.40304 1.19256 1.30628 0.85069 0.76373 0.78114 0.79720 1.21968 1.22389 1.18916 0.93338 0.90903 0.95122 0.74487 0.81206 0.81516 0.73885 0.86713 0.86619 0.90628 0.92244 0.90464 1.00277 0.94540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 9.15 71.98 0.66 -4.50 16 2 C 0.15 5.66 3.48 45.34 0.16 5.81 16 3 H 0.06 1.97 7.72 -2.39 -0.02 1.95 16 4 C 0.15 5.29 2.85 46.23 0.13 5.42 16 5 H 0.07 2.84 7.26 -2.39 -0.02 2.82 16 6 N -0.70 -16.59 5.18 -436.72 -2.26 -18.85 16 7 C 0.50 12.53 7.82 87.66 0.69 13.22 16 8 O -0.56 -21.13 13.82 20.40 0.28 -20.85 16 9 C -0.15 -1.65 6.19 29.10 0.18 -1.47 16 10 C 0.52 9.11 7.82 87.66 0.69 9.79 16 11 O -0.54 -16.68 14.18 20.42 0.29 -16.39 16 12 N -0.72 -6.85 5.42 -463.07 -2.51 -9.36 16 13 C 0.08 0.79 5.64 86.38 0.49 1.28 16 14 C 0.46 4.29 3.11 71.98 0.22 4.52 16 15 F -0.18 -1.86 17.18 44.97 0.77 -1.09 16 16 F -0.18 -2.12 17.32 44.97 0.78 -1.34 16 17 F -0.18 -1.81 17.18 44.97 0.77 -1.04 16 18 C -0.14 -5.39 6.78 32.03 0.22 -5.18 16 19 C 0.16 7.82 5.88 86.85 0.51 8.34 16 20 N -0.61 -30.25 3.13 -668.28 -2.09 -32.34 16 21 C -0.22 -11.97 9.87 84.03 0.83 -11.14 16 22 H 0.09 4.39 7.83 -2.91 -0.02 4.36 16 23 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 24 N -0.95 -56.72 10.09 21.65 0.22 -56.50 16 25 Si 0.98 44.96 29.55 68.60 2.03 46.99 16 26 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 27 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 28 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 29 H 0.05 1.73 8.02 -2.38 -0.02 1.72 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.42 6.53 8.37 -92.71 -0.78 5.75 16 33 H 0.17 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.17 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.42 1.24 8.36 -92.71 -0.78 0.47 16 36 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.08 4.38 5.87 -2.39 -0.01 4.37 16 41 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 42 H 0.24 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -82.55 363.44 3.05 -79.50 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -0.47 Total: 8.76 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 5.23 Total: 22.51 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -6.64 Total: -117.05 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: 0.57 Total: -37.24 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 2.32 Total: -3.47 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -82.55 3.05 -79.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316792782.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.610 kcal (2) G-P(sol) polarization free energy of solvation -82.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds