Wall clock time and date at job start Tue Mar 31 2020 21:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09002 * 109.46364 * 2 1 4 4 N 1.46490 * 109.47209 * 120.00152 * 2 1 3 5 5 C 1.36940 * 120.00415 * 286.91559 * 4 2 1 6 6 H 1.08001 * 119.99451 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00672 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99728 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00404 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47104 * 60.00178 * 9 7 5 11 11 H 1.48495 * 109.47135 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46982 * 300.00050 * 9 7 5 13 13 C 1.52992 * 109.46933 * 240.00460 * 2 1 3 14 14 H 1.09002 * 109.70254 * 286.88317 * 13 2 1 15 15 C 1.53626 * 109.67115 * 47.47424 * 13 2 1 16 16 C 1.53037 * 109.24657 * 174.54807 * 15 13 2 17 17 C 1.53045 * 109.53768 * 298.51394 * 16 15 13 18 18 C 1.53195 * 109.31107 * 61.36255 * 17 16 15 19 19 N 1.46922 * 109.58687 * 166.52836 * 13 2 1 20 20 C 1.34776 * 120.63009 * 6.62672 * 19 13 2 21 21 O 1.21522 * 119.99989 * 3.34702 * 20 19 13 22 22 C 1.48080 * 120.00240 * 183.35042 * 20 19 13 23 23 C 1.39861 * 120.93106 * 305.96428 * 22 20 19 24 24 C 1.38088 * 119.01944 * 180.02562 * 23 22 20 25 25 N 1.31843 * 120.93822 * 0.25648 * 24 23 22 26 26 C 1.31764 * 122.07316 * 359.46701 * 25 24 23 27 27 C 1.38359 * 120.86677 * 0.53096 * 26 25 24 28 28 Cl 1.73597 * 120.51572 * 179.71769 * 27 26 25 29 29 H 1.09001 * 109.46929 * 299.99861 * 1 2 3 30 30 H 1.08997 * 109.47099 * 59.99815 * 1 2 3 31 31 H 1.08993 * 109.46574 * 179.97438 * 1 2 3 32 32 H 0.96996 * 120.00504 * 106.91435 * 4 2 1 33 33 H 0.96998 * 120.00149 * 179.97438 * 8 7 5 34 34 H 1.09011 * 109.62797 * 54.55619 * 15 13 2 35 35 H 1.09004 * 109.45555 * 294.43822 * 15 13 2 36 36 H 1.08998 * 109.45814 * 178.49434 * 16 15 13 37 37 H 1.08995 * 109.46024 * 58.53559 * 16 15 13 38 38 H 1.09005 * 109.49282 * 301.41315 * 17 16 15 39 39 H 1.08994 * 109.52057 * 181.33612 * 17 16 15 40 40 H 1.09003 * 109.58165 * 185.57738 * 18 17 16 41 41 H 1.08996 * 109.58270 * 65.15565 * 18 17 16 42 42 H 1.08001 * 120.49438 * 0.03761 * 23 22 20 43 43 H 1.08001 * 119.53062 * 179.97438 * 24 23 22 44 44 H 1.07994 * 119.56449 * 180.27352 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.9214 -0.0884 2.4221 6 1 1.4844 0.8956 2.5072 7 6 2.3836 -0.7429 3.5555 8 7 2.9157 -1.9423 3.4518 9 14 2.2518 0.0789 5.2278 10 1 0.8252 0.3577 5.5313 11 1 2.8128 -0.8210 6.2672 12 1 3.0133 1.3538 5.2142 13 6 2.0400 -0.7211 -1.2492 14 1 1.8815 -1.7945 -1.1444 15 6 1.2905 -0.2045 -2.4867 16 6 1.8997 -0.8305 -3.7433 17 6 3.3680 -0.4152 -3.8617 18 6 4.1398 -0.9294 -2.6424 19 7 3.4733 -0.4497 -1.4241 20 6 4.1650 0.2217 -0.4821 21 8 3.6183 0.5556 0.5506 22 6 5.5910 0.5525 -0.7054 23 6 6.5168 -0.4428 -1.0345 24 6 7.8370 -0.0901 -1.2337 25 7 8.2296 1.1626 -1.1128 26 6 7.3909 2.1325 -0.8095 27 6 6.0499 1.8695 -0.5927 28 17 4.9543 3.1533 -0.1865 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0276 -0.0005 32 1 2.4105 -1.5745 1.1197 33 1 3.2390 -2.3996 4.2438 34 1 1.3785 0.8807 -2.5416 35 1 0.2386 -0.4811 -2.4158 36 1 1.3532 -0.4869 -4.6216 37 1 1.8337 -1.9164 -3.6766 38 1 3.4363 0.6719 -3.9036 39 1 3.7951 -0.8418 -4.7692 40 1 5.1624 -0.5531 -2.6719 41 1 4.1491 -2.0193 -2.6489 42 1 6.2039 -1.4719 -1.1317 43 1 8.5590 -0.8521 -1.4878 44 1 7.7557 3.1455 -0.7250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316877138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:44 Heat of formation + Delta-G solvation = 53.402837 kcal Electronic energy + Delta-G solvation = -28743.018100 eV Core-core repulsion = 24916.444678 eV Total energy + Delta-G solvation = -3826.573422 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.80313 -39.57258 -36.99849 -36.46140 -35.36087 -33.10348 -32.24983 -31.89278 -31.12738 -29.87781 -27.79224 -25.84673 -24.33159 -23.88195 -23.63235 -22.62931 -20.92099 -20.02071 -19.39214 -17.49029 -16.72792 -16.64131 -16.36729 -15.58046 -15.29471 -14.95277 -14.63658 -14.46160 -14.09703 -14.00955 -13.77106 -13.49219 -13.29037 -13.05956 -12.83368 -12.56169 -12.16365 -12.08230 -11.95290 -11.92391 -11.40769 -11.17822 -11.10056 -10.98629 -10.85818 -10.65398 -10.61200 -10.43644 -10.19160 -9.87307 -9.73550 -9.65825 -9.42222 -8.99867 -8.66206 -8.43228 -8.06697 -6.52547 -5.50096 -2.70317 0.77995 0.85833 2.08850 3.17277 3.22915 3.58132 3.62098 3.63730 3.63986 4.27327 4.46876 4.65961 4.74088 4.78700 4.79680 4.90430 4.94286 5.12054 5.15615 5.36470 5.40986 5.45522 5.55182 5.63341 5.73498 5.78353 5.83044 5.86408 5.88621 5.97307 6.06464 6.08830 6.12628 6.31988 6.33715 6.44666 6.45322 6.78548 6.87069 7.03897 7.34893 7.68254 7.81256 7.94576 8.66855 8.79983 9.79308 10.35789 10.71068 11.74199 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.009190 B = 0.006023 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.986516 B = 4647.511638 C = 6313.286621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.179 3.821 3 H 0.060 0.940 4 N -0.692 5.692 5 C -0.185 4.185 6 H 0.062 0.938 7 C -0.025 4.025 8 N -0.944 5.944 9 Si 0.897 3.103 10 H -0.291 1.291 11 H -0.295 1.295 12 H -0.291 1.291 13 C 0.150 3.850 14 H 0.069 0.931 15 C -0.128 4.128 16 C -0.118 4.118 17 C -0.133 4.133 18 C 0.103 3.897 19 N -0.606 5.606 20 C 0.512 3.488 21 O -0.400 6.400 22 C -0.051 4.051 23 C -0.137 4.137 24 C 0.095 3.905 25 N -0.467 5.467 26 C 0.109 3.891 27 C -0.057 4.057 28 Cl -0.033 7.033 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.044 0.956 32 H 0.377 0.623 33 H 0.248 0.752 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.148 0.852 43 H 0.165 0.835 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.338 3.485 -18.766 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.069 3.931 3 H 0.078 0.922 4 N -0.332 5.332 5 C -0.317 4.317 6 H 0.080 0.920 7 C -0.218 4.218 8 N -0.596 5.596 9 Si 0.730 3.270 10 H -0.218 1.218 11 H -0.222 1.222 12 H -0.218 1.218 13 C 0.047 3.953 14 H 0.087 0.913 15 C -0.167 4.167 16 C -0.156 4.156 17 C -0.172 4.172 18 C -0.020 4.020 19 N -0.344 5.344 20 C 0.294 3.706 21 O -0.265 6.265 22 C -0.064 4.064 23 C -0.157 4.157 24 C -0.061 4.061 25 N -0.177 5.177 26 C -0.049 4.049 27 C -0.087 4.087 28 Cl -0.004 7.004 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.210 0.790 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.165 0.835 43 H 0.182 0.818 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.772 4.123 -18.061 19.404 hybrid contribution -0.702 -0.129 1.126 1.333 sum 5.069 3.994 -16.935 18.123 Atomic orbital electron populations 1.22567 0.99589 1.00695 1.00011 1.20447 0.90636 0.96865 0.85113 0.92207 1.42241 1.71230 1.18274 1.01470 1.18962 1.29868 0.98716 0.84110 0.91965 1.24538 1.02988 0.97079 0.97216 1.69626 1.48465 1.13723 1.27739 0.86384 0.77237 0.78289 0.85102 1.21825 1.22151 1.21782 1.21623 0.78359 0.99650 0.95664 0.91339 1.22105 0.99797 1.00910 0.93896 1.21521 0.95370 1.00739 0.97985 1.21910 0.96218 1.01519 0.97535 1.21819 0.96723 0.99014 0.84476 1.47734 1.09557 1.57531 1.19561 1.18095 0.84912 0.82659 0.84921 1.91384 1.65844 1.46434 1.22865 1.20705 0.97039 0.92233 0.96376 1.22410 0.93814 1.00433 0.99092 1.22788 0.94155 0.93359 0.95784 1.67655 1.37295 1.00929 1.11788 1.22732 0.87125 0.99521 0.95552 1.22163 0.93110 0.90260 1.03123 1.98418 1.62570 1.47857 1.91551 0.92655 0.94391 0.93645 0.78968 0.94200 0.91600 0.90437 0.92046 0.91865 0.91710 0.91240 0.90107 0.91609 0.83468 0.81788 0.81657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 8.62 37.16 0.32 -2.75 16 2 C 0.18 3.60 1.84 -67.93 -0.13 3.48 16 3 H 0.06 1.34 6.28 -51.93 -0.33 1.02 16 4 N -0.69 -17.44 3.26 -53.43 -0.17 -17.61 16 5 C -0.18 -5.29 8.32 -15.06 -0.13 -5.42 16 6 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 7 C -0.02 -0.74 5.50 -17.43 -0.10 -0.84 16 8 N -0.94 -29.58 13.06 55.49 0.72 -28.85 16 9 Si 0.90 23.96 29.55 -169.99 -5.02 18.94 16 10 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 11 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 12 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 13 C 0.15 2.39 2.63 -67.38 -0.18 2.21 16 14 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 15 C -0.13 -1.59 4.42 -26.39 -0.12 -1.70 16 16 C -0.12 -1.16 5.88 -26.69 -0.16 -1.32 16 17 C -0.13 -1.27 6.08 -26.61 -0.16 -1.43 16 18 C 0.10 1.15 5.58 -3.71 -0.02 1.13 16 19 N -0.61 -9.24 2.97 -165.99 -0.49 -9.74 16 20 C 0.51 9.35 6.47 -12.22 -0.08 9.27 16 21 O -0.40 -9.23 9.34 5.35 0.05 -9.18 16 22 C -0.05 -0.80 4.89 -104.62 -0.51 -1.31 16 23 C -0.14 -1.73 7.56 -39.03 -0.30 -2.03 16 24 C 0.10 1.07 11.17 -17.60 -0.20 0.88 16 25 N -0.47 -5.98 10.33 -13.27 -0.14 -6.12 16 26 C 0.11 1.40 10.99 -17.54 -0.19 1.21 16 27 C -0.06 -0.85 6.37 -38.91 -0.25 -1.10 16 28 Cl -0.03 -0.52 27.57 -51.86 -1.43 -1.95 16 29 H 0.05 1.12 7.98 -51.93 -0.41 0.70 16 30 H 0.04 0.57 6.45 -51.93 -0.33 0.23 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.38 10.27 7.68 -40.82 -0.31 9.96 16 33 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 35 H 0.08 0.91 6.72 -51.93 -0.35 0.56 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.84 4.77 -51.93 -0.25 0.59 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.15 1.63 7.44 -52.49 -0.39 1.24 16 43 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 358.40 15.07 5.40 5.40 Total: -1.00 -34.00 358.40 -9.41 -43.41 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.15 Total: 5.42 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -2.18 Total: 0.29 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -0.08 Total: -62.32 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.05 Total: -9.18 kcal Atomic # 14 Polarization: 23.96 SS G_CDS: -5.02 Total: 18.94 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.43 Total: -1.95 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.00 -9.41 -43.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316877138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.815 kcal (2) G-P(sol) polarization free energy of solvation -34.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds