Wall clock time and date at job start Tue Mar 31 2020 21:09:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53011 * 1
3 3 H 1.09002 * 109.46364 * 2 1
4 4 N 1.46490 * 109.47209 * 120.00152 * 2 1 3
5 5 C 1.36940 * 120.00415 * 286.91559 * 4 2 1
6 6 H 1.08001 * 119.99451 * 0.02562 * 5 4 2
7 7 C 1.38806 * 120.00672 * 179.97438 * 5 4 2
8 8 N 1.31621 * 119.99728 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 120.00404 * 179.97438 * 7 5 4
10 10 H 1.48494 * 109.47104 * 60.00178 * 9 7 5
11 11 H 1.48495 * 109.47135 * 180.02562 * 9 7 5
12 12 H 1.48496 * 109.46982 * 300.00050 * 9 7 5
13 13 C 1.52992 * 109.46933 * 240.00460 * 2 1 3
14 14 H 1.09002 * 109.70254 * 286.88317 * 13 2 1
15 15 C 1.53626 * 109.67115 * 47.47424 * 13 2 1
16 16 C 1.53037 * 109.24657 * 174.54807 * 15 13 2
17 17 C 1.53045 * 109.53768 * 298.51394 * 16 15 13
18 18 C 1.53195 * 109.31107 * 61.36255 * 17 16 15
19 19 N 1.46922 * 109.58687 * 166.52836 * 13 2 1
20 20 C 1.34776 * 120.63009 * 6.62672 * 19 13 2
21 21 O 1.21522 * 119.99989 * 3.34702 * 20 19 13
22 22 C 1.48080 * 120.00240 * 183.35042 * 20 19 13
23 23 C 1.39861 * 120.93106 * 305.96428 * 22 20 19
24 24 C 1.38088 * 119.01944 * 180.02562 * 23 22 20
25 25 N 1.31843 * 120.93822 * 0.25648 * 24 23 22
26 26 C 1.31764 * 122.07316 * 359.46701 * 25 24 23
27 27 C 1.38359 * 120.86677 * 0.53096 * 26 25 24
28 28 Cl 1.73597 * 120.51572 * 179.71769 * 27 26 25
29 29 H 1.09001 * 109.46929 * 299.99861 * 1 2 3
30 30 H 1.08997 * 109.47099 * 59.99815 * 1 2 3
31 31 H 1.08993 * 109.46574 * 179.97438 * 1 2 3
32 32 H 0.96996 * 120.00504 * 106.91435 * 4 2 1
33 33 H 0.96998 * 120.00149 * 179.97438 * 8 7 5
34 34 H 1.09011 * 109.62797 * 54.55619 * 15 13 2
35 35 H 1.09004 * 109.45555 * 294.43822 * 15 13 2
36 36 H 1.08998 * 109.45814 * 178.49434 * 16 15 13
37 37 H 1.08995 * 109.46024 * 58.53559 * 16 15 13
38 38 H 1.09005 * 109.49282 * 301.41315 * 17 16 15
39 39 H 1.08994 * 109.52057 * 181.33612 * 17 16 15
40 40 H 1.09003 * 109.58165 * 185.57738 * 18 17 16
41 41 H 1.08996 * 109.58270 * 65.15565 * 18 17 16
42 42 H 1.08001 * 120.49438 * 0.03761 * 23 22 20
43 43 H 1.08001 * 119.53062 * 179.97438 * 24 23 22
44 44 H 1.07994 * 119.56449 * 180.27352 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 1.9214 -0.0884 2.4221
6 1 1.4844 0.8956 2.5072
7 6 2.3836 -0.7429 3.5555
8 7 2.9157 -1.9423 3.4518
9 14 2.2518 0.0789 5.2278
10 1 0.8252 0.3577 5.5313
11 1 2.8128 -0.8210 6.2672
12 1 3.0133 1.3538 5.2142
13 6 2.0400 -0.7211 -1.2492
14 1 1.8815 -1.7945 -1.1444
15 6 1.2905 -0.2045 -2.4867
16 6 1.8997 -0.8305 -3.7433
17 6 3.3680 -0.4152 -3.8617
18 6 4.1398 -0.9294 -2.6424
19 7 3.4733 -0.4497 -1.4241
20 6 4.1650 0.2217 -0.4821
21 8 3.6183 0.5556 0.5506
22 6 5.5910 0.5525 -0.7054
23 6 6.5168 -0.4428 -1.0345
24 6 7.8370 -0.0901 -1.2337
25 7 8.2296 1.1626 -1.1128
26 6 7.3909 2.1325 -0.8095
27 6 6.0499 1.8695 -0.5927
28 17 4.9543 3.1533 -0.1865
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 -0.3632 -1.0276 -0.0005
32 1 2.4105 -1.5745 1.1197
33 1 3.2390 -2.3996 4.2438
34 1 1.3785 0.8807 -2.5416
35 1 0.2386 -0.4811 -2.4158
36 1 1.3532 -0.4869 -4.6216
37 1 1.8337 -1.9164 -3.6766
38 1 3.4363 0.6719 -3.9036
39 1 3.7951 -0.8418 -4.7692
40 1 5.1624 -0.5531 -2.6719
41 1 4.1491 -2.0193 -2.6489
42 1 6.2039 -1.4719 -1.1317
43 1 8.5590 -0.8521 -1.4878
44 1 7.7557 3.1455 -0.7250
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001316877138.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:09:43
Heat of formation + Delta-G solvation = 31.521814 kcal
Electronic energy + Delta-G solvation = -28743.966932 eV
Core-core repulsion = 24916.444678 eV
Total energy + Delta-G solvation = -3827.522254 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 337.130 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.97677 -40.71455 -38.22112 -37.62481 -36.97502 -34.51650 -33.82642 -33.03549
-32.15173 -31.47127 -29.37172 -27.09093 -26.00677 -24.95374 -24.74442 -24.04260
-22.03780 -21.41415 -20.61114 -19.09123 -18.24826 -17.80311 -17.44927 -16.85812
-16.74088 -16.32777 -15.94610 -15.53762 -15.48320 -15.14400 -15.06003 -14.79326
-14.56558 -14.51085 -14.19099 -13.85922 -13.58506 -13.44943 -13.13358 -13.07976
-12.98213 -12.78465 -12.59942 -12.41223 -12.25509 -12.15590 -11.99075 -11.70366
-11.60196 -11.42042 -11.26183 -10.89094 -10.83225 -10.73794 -10.03895 -9.85653
-9.40625 -8.58092 -7.77289 -4.93812 -0.31215 -0.15385 0.96496 1.41326
1.44981 1.49529 1.89559 2.04753 2.57160 2.64892 3.34062 3.38789
3.56419 3.65022 3.75833 3.84799 3.86509 3.99764 4.12203 4.14461
4.31595 4.35659 4.38288 4.50222 4.59122 4.63446 4.72337 4.75898
4.85475 4.88493 4.94826 5.05364 5.09154 5.12981 5.18990 5.27627
5.37521 5.43211 5.48191 5.55508 5.62974 5.90145 6.44572 6.56259
6.69280 7.44828 7.53033 8.29996 8.52798 9.47655
Molecular weight = 337.13amu
Principal moments of inertia in cm(-1)
A = 0.009190 B = 0.006023 C = 0.004434
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3045.986516 B = 4647.511638 C = 6313.286621
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.178 3.822
3 H 0.036 0.964
4 N -0.695 5.695
5 C -0.165 4.165
6 H 0.052 0.948
7 C -0.089 4.089
8 N -0.976 5.976
9 Si 0.949 3.051
10 H -0.282 1.282
11 H -0.298 1.298
12 H -0.295 1.295
13 C 0.153 3.847
14 H 0.063 0.937
15 C -0.121 4.121
16 C -0.114 4.114
17 C -0.128 4.128
18 C 0.096 3.904
19 N -0.603 5.603
20 C 0.511 3.489
21 O -0.466 6.466
22 C -0.075 4.075
23 C -0.134 4.134
24 C 0.109 3.891
25 N -0.474 5.474
26 C 0.114 3.886
27 C -0.073 4.073
28 Cl -0.051 7.051
29 H 0.028 0.972
30 H 0.074 0.926
31 H 0.046 0.954
32 H 0.364 0.636
33 H 0.240 0.760
34 H 0.058 0.942
35 H 0.087 0.913
36 H 0.083 0.917
37 H 0.071 0.929
38 H 0.055 0.945
39 H 0.100 0.900
40 H 0.090 0.910
41 H 0.081 0.919
42 H 0.163 0.837
43 H 0.206 0.794
44 H 0.188 0.812
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.223 2.978 -21.751 22.819
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.070 3.930
3 H 0.053 0.947
4 N -0.333 5.333
5 C -0.298 4.298
6 H 0.070 0.930
7 C -0.279 4.279
8 N -0.631 5.631
9 Si 0.782 3.218
10 H -0.209 1.209
11 H -0.224 1.224
12 H -0.223 1.223
13 C 0.050 3.950
14 H 0.081 0.919
15 C -0.160 4.160
16 C -0.151 4.151
17 C -0.166 4.166
18 C -0.026 4.026
19 N -0.339 5.339
20 C 0.295 3.705
21 O -0.335 6.335
22 C -0.087 4.087
23 C -0.154 4.154
24 C -0.047 4.047
25 N -0.183 5.183
26 C -0.043 4.043
27 C -0.103 4.103
28 Cl -0.022 7.022
29 H 0.047 0.953
30 H 0.093 0.907
31 H 0.065 0.935
32 H 0.195 0.805
33 H 0.049 0.951
34 H 0.077 0.923
35 H 0.106 0.894
36 H 0.101 0.899
37 H 0.090 0.910
38 H 0.074 0.926
39 H 0.118 0.882
40 H 0.108 0.892
41 H 0.100 0.900
42 H 0.181 0.819
43 H 0.223 0.777
44 H 0.205 0.795
Dipole moment (debyes) X Y Z Total
from point charges 6.636 3.638 -21.133 22.447
hybrid contribution -0.901 0.062 1.874 2.081
sum 5.734 3.701 -19.259 20.432
Atomic orbital electron populations
1.22424 0.98024 1.00899 1.00499 1.20525 0.91471 0.95700 0.85336
0.94658 1.42276 1.71275 1.17684 1.02044 1.19114 1.27288 0.97753
0.85648 0.93019 1.25116 1.04640 0.98048 1.00053 1.69762 1.50744
1.14959 1.27679 0.85517 0.77377 0.76990 0.81902 1.20890 1.22445
1.22302 1.21512 0.79406 0.98741 0.95352 0.91886 1.22054 1.00019
1.00529 0.93354 1.21516 0.95530 1.01037 0.97038 1.21896 0.95924
1.01089 0.97678 1.22146 0.97219 0.99944 0.83269 1.47879 1.09347
1.56360 1.20272 1.18571 0.85981 0.81490 0.84443 1.91341 1.67404
1.49506 1.25298 1.20671 0.96155 0.93451 0.98392 1.22620 0.93921
1.00441 0.98460 1.23430 0.94171 0.93607 0.93484 1.67785 1.37076
1.01535 1.11909 1.23056 0.86138 1.00713 0.94443 1.22322 0.93706
0.89768 1.04512 1.98405 1.63371 1.48581 1.91864 0.95315 0.90709
0.93479 0.80462 0.95121 0.92308 0.89435 0.89859 0.91043 0.92606
0.88171 0.89219 0.90049 0.81905 0.77715 0.79527
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.78 8.62 71.99 0.62 -5.16 16
2 C 0.18 7.32 1.84 44.99 0.08 7.40 16
3 H 0.04 1.66 6.28 -2.39 -0.01 1.65 16
4 N -0.69 -36.29 3.26 -322.95 -1.05 -37.35 16
5 C -0.16 -9.80 8.32 84.03 0.70 -9.10 16
6 H 0.05 3.12 7.83 -2.91 -0.02 3.10 16
7 C -0.09 -5.49 5.50 84.86 0.47 -5.02 16
8 N -0.98 -63.21 13.06 21.65 0.28 -62.92 16
9 Si 0.95 50.91 29.55 68.60 2.03 52.94 16
10 H -0.28 -14.50 7.11 99.48 0.71 -13.80 16
11 H -0.30 -15.96 7.11 99.48 0.71 -15.25 16
12 H -0.30 -15.85 7.11 99.48 0.71 -15.14 16
13 C 0.15 4.79 2.63 45.12 0.12 4.91 16
14 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16
15 C -0.12 -2.72 4.42 30.82 0.14 -2.59 16
16 C -0.11 -1.81 5.88 30.62 0.18 -1.63 16
17 C -0.13 -1.97 6.08 30.67 0.19 -1.78 16
18 C 0.10 1.89 5.58 86.36 0.48 2.37 16
19 N -0.60 -17.98 2.97 -797.36 -2.36 -20.34 16
20 C 0.51 18.98 6.47 86.86 0.56 19.54 16
21 O -0.47 -22.41 9.34 -3.79 -0.04 -22.45 16
22 C -0.07 -2.30 4.89 -19.86 -0.10 -2.40 16
23 C -0.13 -3.12 7.56 22.63 0.17 -2.94 16
24 C 0.11 2.11 11.17 84.66 0.95 3.06 16
25 N -0.47 -10.90 10.33 -195.90 -2.02 -12.93 16
26 C 0.11 2.77 10.99 84.73 0.93 3.70 16
27 C -0.07 -2.18 6.37 22.71 0.14 -2.03 16
28 Cl -0.05 -1.65 27.57 -2.72 -0.08 -1.73 16
29 H 0.03 1.17 7.98 -2.39 -0.02 1.15 16
30 H 0.07 2.15 6.45 -2.39 -0.02 2.13 16
31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16
32 H 0.36 20.58 7.68 -92.71 -0.71 19.87 16
33 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16
34 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16
35 H 0.09 1.80 6.72 -2.39 -0.02 1.79 16
36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16
37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16
38 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16
39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16
40 H 0.09 1.62 4.77 -2.39 -0.01 1.61 16
41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16
42 H 0.16 3.20 7.44 -2.91 -0.02 3.17 16
43 H 0.21 2.22 8.06 -2.91 -0.02 2.19 16
44 H 0.19 3.55 8.06 -2.91 -0.02 3.52 16
Total: -1.00 -78.11 358.40 2.70 -75.41
By element:
Atomic # 1 Polarization: 20.74 SS G_CDS: 0.31 Total: 21.05 kcal
Atomic # 6 Polarization: 2.68 SS G_CDS: 5.63 Total: 8.31 kcal
Atomic # 7 Polarization: -128.38 SS G_CDS: -5.16 Total: -133.54 kcal
Atomic # 8 Polarization: -22.41 SS G_CDS: -0.04 Total: -22.45 kcal
Atomic # 14 Polarization: 50.91 SS G_CDS: 2.03 Total: 52.94 kcal
Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.73 kcal
Total: -78.11 2.70 -75.41 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001316877138.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 106.933 kcal
(2) G-P(sol) polarization free energy of solvation -78.112 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.821 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.411 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.522 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds