Wall clock time and date at job start Tue Mar 31 2020 21:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09002 * 109.46364 * 2 1 4 4 N 1.46490 * 109.47209 * 120.00152 * 2 1 3 5 5 C 1.36940 * 120.00415 * 286.91559 * 4 2 1 6 6 H 1.08001 * 119.99451 * 0.02562 * 5 4 2 7 7 C 1.38806 * 120.00672 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99728 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00404 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47104 * 60.00178 * 9 7 5 11 11 H 1.48495 * 109.47135 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46982 * 300.00050 * 9 7 5 13 13 C 1.52992 * 109.46933 * 240.00460 * 2 1 3 14 14 H 1.09002 * 109.70254 * 286.88317 * 13 2 1 15 15 C 1.53626 * 109.67115 * 47.47424 * 13 2 1 16 16 C 1.53037 * 109.24657 * 174.54807 * 15 13 2 17 17 C 1.53045 * 109.53768 * 298.51394 * 16 15 13 18 18 C 1.53195 * 109.31107 * 61.36255 * 17 16 15 19 19 N 1.46922 * 109.58687 * 166.52836 * 13 2 1 20 20 C 1.34776 * 120.63009 * 6.62672 * 19 13 2 21 21 O 1.21522 * 119.99989 * 3.34702 * 20 19 13 22 22 C 1.48080 * 120.00240 * 183.35042 * 20 19 13 23 23 C 1.39861 * 120.93106 * 305.96428 * 22 20 19 24 24 C 1.38088 * 119.01944 * 180.02562 * 23 22 20 25 25 N 1.31843 * 120.93822 * 0.25648 * 24 23 22 26 26 C 1.31764 * 122.07316 * 359.46701 * 25 24 23 27 27 C 1.38359 * 120.86677 * 0.53096 * 26 25 24 28 28 Cl 1.73597 * 120.51572 * 179.71769 * 27 26 25 29 29 H 1.09001 * 109.46929 * 299.99861 * 1 2 3 30 30 H 1.08997 * 109.47099 * 59.99815 * 1 2 3 31 31 H 1.08993 * 109.46574 * 179.97438 * 1 2 3 32 32 H 0.96996 * 120.00504 * 106.91435 * 4 2 1 33 33 H 0.96998 * 120.00149 * 179.97438 * 8 7 5 34 34 H 1.09011 * 109.62797 * 54.55619 * 15 13 2 35 35 H 1.09004 * 109.45555 * 294.43822 * 15 13 2 36 36 H 1.08998 * 109.45814 * 178.49434 * 16 15 13 37 37 H 1.08995 * 109.46024 * 58.53559 * 16 15 13 38 38 H 1.09005 * 109.49282 * 301.41315 * 17 16 15 39 39 H 1.08994 * 109.52057 * 181.33612 * 17 16 15 40 40 H 1.09003 * 109.58165 * 185.57738 * 18 17 16 41 41 H 1.08996 * 109.58270 * 65.15565 * 18 17 16 42 42 H 1.08001 * 120.49438 * 0.03761 * 23 22 20 43 43 H 1.08001 * 119.53062 * 179.97438 * 24 23 22 44 44 H 1.07994 * 119.56449 * 180.27352 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.9214 -0.0884 2.4221 6 1 1.4844 0.8956 2.5072 7 6 2.3836 -0.7429 3.5555 8 7 2.9157 -1.9423 3.4518 9 14 2.2518 0.0789 5.2278 10 1 0.8252 0.3577 5.5313 11 1 2.8128 -0.8210 6.2672 12 1 3.0133 1.3538 5.2142 13 6 2.0400 -0.7211 -1.2492 14 1 1.8815 -1.7945 -1.1444 15 6 1.2905 -0.2045 -2.4867 16 6 1.8997 -0.8305 -3.7433 17 6 3.3680 -0.4152 -3.8617 18 6 4.1398 -0.9294 -2.6424 19 7 3.4733 -0.4497 -1.4241 20 6 4.1650 0.2217 -0.4821 21 8 3.6183 0.5556 0.5506 22 6 5.5910 0.5525 -0.7054 23 6 6.5168 -0.4428 -1.0345 24 6 7.8370 -0.0901 -1.2337 25 7 8.2296 1.1626 -1.1128 26 6 7.3909 2.1325 -0.8095 27 6 6.0499 1.8695 -0.5927 28 17 4.9543 3.1533 -0.1865 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0276 -0.0005 32 1 2.4105 -1.5745 1.1197 33 1 3.2390 -2.3996 4.2438 34 1 1.3785 0.8807 -2.5416 35 1 0.2386 -0.4811 -2.4158 36 1 1.3532 -0.4869 -4.6216 37 1 1.8337 -1.9164 -3.6766 38 1 3.4363 0.6719 -3.9036 39 1 3.7951 -0.8418 -4.7692 40 1 5.1624 -0.5531 -2.6719 41 1 4.1491 -2.0193 -2.6489 42 1 6.2039 -1.4719 -1.1317 43 1 8.5590 -0.8521 -1.4878 44 1 7.7557 3.1455 -0.7250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316877138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:43 Heat of formation + Delta-G solvation = 31.521814 kcal Electronic energy + Delta-G solvation = -28743.966932 eV Core-core repulsion = 24916.444678 eV Total energy + Delta-G solvation = -3827.522254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.97677 -40.71455 -38.22112 -37.62481 -36.97502 -34.51650 -33.82642 -33.03549 -32.15173 -31.47127 -29.37172 -27.09093 -26.00677 -24.95374 -24.74442 -24.04260 -22.03780 -21.41415 -20.61114 -19.09123 -18.24826 -17.80311 -17.44927 -16.85812 -16.74088 -16.32777 -15.94610 -15.53762 -15.48320 -15.14400 -15.06003 -14.79326 -14.56558 -14.51085 -14.19099 -13.85922 -13.58506 -13.44943 -13.13358 -13.07976 -12.98213 -12.78465 -12.59942 -12.41223 -12.25509 -12.15590 -11.99075 -11.70366 -11.60196 -11.42042 -11.26183 -10.89094 -10.83225 -10.73794 -10.03895 -9.85653 -9.40625 -8.58092 -7.77289 -4.93812 -0.31215 -0.15385 0.96496 1.41326 1.44981 1.49529 1.89559 2.04753 2.57160 2.64892 3.34062 3.38789 3.56419 3.65022 3.75833 3.84799 3.86509 3.99764 4.12203 4.14461 4.31595 4.35659 4.38288 4.50222 4.59122 4.63446 4.72337 4.75898 4.85475 4.88493 4.94826 5.05364 5.09154 5.12981 5.18990 5.27627 5.37521 5.43211 5.48191 5.55508 5.62974 5.90145 6.44572 6.56259 6.69280 7.44828 7.53033 8.29996 8.52798 9.47655 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.009190 B = 0.006023 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.986516 B = 4647.511638 C = 6313.286621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.178 3.822 3 H 0.036 0.964 4 N -0.695 5.695 5 C -0.165 4.165 6 H 0.052 0.948 7 C -0.089 4.089 8 N -0.976 5.976 9 Si 0.949 3.051 10 H -0.282 1.282 11 H -0.298 1.298 12 H -0.295 1.295 13 C 0.153 3.847 14 H 0.063 0.937 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.128 4.128 18 C 0.096 3.904 19 N -0.603 5.603 20 C 0.511 3.489 21 O -0.466 6.466 22 C -0.075 4.075 23 C -0.134 4.134 24 C 0.109 3.891 25 N -0.474 5.474 26 C 0.114 3.886 27 C -0.073 4.073 28 Cl -0.051 7.051 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.364 0.636 33 H 0.240 0.760 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.163 0.837 43 H 0.206 0.794 44 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.223 2.978 -21.751 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.070 3.930 3 H 0.053 0.947 4 N -0.333 5.333 5 C -0.298 4.298 6 H 0.070 0.930 7 C -0.279 4.279 8 N -0.631 5.631 9 Si 0.782 3.218 10 H -0.209 1.209 11 H -0.224 1.224 12 H -0.223 1.223 13 C 0.050 3.950 14 H 0.081 0.919 15 C -0.160 4.160 16 C -0.151 4.151 17 C -0.166 4.166 18 C -0.026 4.026 19 N -0.339 5.339 20 C 0.295 3.705 21 O -0.335 6.335 22 C -0.087 4.087 23 C -0.154 4.154 24 C -0.047 4.047 25 N -0.183 5.183 26 C -0.043 4.043 27 C -0.103 4.103 28 Cl -0.022 7.022 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.195 0.805 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.181 0.819 43 H 0.223 0.777 44 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 6.636 3.638 -21.133 22.447 hybrid contribution -0.901 0.062 1.874 2.081 sum 5.734 3.701 -19.259 20.432 Atomic orbital electron populations 1.22424 0.98024 1.00899 1.00499 1.20525 0.91471 0.95700 0.85336 0.94658 1.42276 1.71275 1.17684 1.02044 1.19114 1.27288 0.97753 0.85648 0.93019 1.25116 1.04640 0.98048 1.00053 1.69762 1.50744 1.14959 1.27679 0.85517 0.77377 0.76990 0.81902 1.20890 1.22445 1.22302 1.21512 0.79406 0.98741 0.95352 0.91886 1.22054 1.00019 1.00529 0.93354 1.21516 0.95530 1.01037 0.97038 1.21896 0.95924 1.01089 0.97678 1.22146 0.97219 0.99944 0.83269 1.47879 1.09347 1.56360 1.20272 1.18571 0.85981 0.81490 0.84443 1.91341 1.67404 1.49506 1.25298 1.20671 0.96155 0.93451 0.98392 1.22620 0.93921 1.00441 0.98460 1.23430 0.94171 0.93607 0.93484 1.67785 1.37076 1.01535 1.11909 1.23056 0.86138 1.00713 0.94443 1.22322 0.93706 0.89768 1.04512 1.98405 1.63371 1.48581 1.91864 0.95315 0.90709 0.93479 0.80462 0.95121 0.92308 0.89435 0.89859 0.91043 0.92606 0.88171 0.89219 0.90049 0.81905 0.77715 0.79527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.78 8.62 71.99 0.62 -5.16 16 2 C 0.18 7.32 1.84 44.99 0.08 7.40 16 3 H 0.04 1.66 6.28 -2.39 -0.01 1.65 16 4 N -0.69 -36.29 3.26 -322.95 -1.05 -37.35 16 5 C -0.16 -9.80 8.32 84.03 0.70 -9.10 16 6 H 0.05 3.12 7.83 -2.91 -0.02 3.10 16 7 C -0.09 -5.49 5.50 84.86 0.47 -5.02 16 8 N -0.98 -63.21 13.06 21.65 0.28 -62.92 16 9 Si 0.95 50.91 29.55 68.60 2.03 52.94 16 10 H -0.28 -14.50 7.11 99.48 0.71 -13.80 16 11 H -0.30 -15.96 7.11 99.48 0.71 -15.25 16 12 H -0.30 -15.85 7.11 99.48 0.71 -15.14 16 13 C 0.15 4.79 2.63 45.12 0.12 4.91 16 14 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 15 C -0.12 -2.72 4.42 30.82 0.14 -2.59 16 16 C -0.11 -1.81 5.88 30.62 0.18 -1.63 16 17 C -0.13 -1.97 6.08 30.67 0.19 -1.78 16 18 C 0.10 1.89 5.58 86.36 0.48 2.37 16 19 N -0.60 -17.98 2.97 -797.36 -2.36 -20.34 16 20 C 0.51 18.98 6.47 86.86 0.56 19.54 16 21 O -0.47 -22.41 9.34 -3.79 -0.04 -22.45 16 22 C -0.07 -2.30 4.89 -19.86 -0.10 -2.40 16 23 C -0.13 -3.12 7.56 22.63 0.17 -2.94 16 24 C 0.11 2.11 11.17 84.66 0.95 3.06 16 25 N -0.47 -10.90 10.33 -195.90 -2.02 -12.93 16 26 C 0.11 2.77 10.99 84.73 0.93 3.70 16 27 C -0.07 -2.18 6.37 22.71 0.14 -2.03 16 28 Cl -0.05 -1.65 27.57 -2.72 -0.08 -1.73 16 29 H 0.03 1.17 7.98 -2.39 -0.02 1.15 16 30 H 0.07 2.15 6.45 -2.39 -0.02 2.13 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.36 20.58 7.68 -92.71 -0.71 19.87 16 33 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.09 1.80 6.72 -2.39 -0.02 1.79 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.62 4.77 -2.39 -0.01 1.61 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.16 3.20 7.44 -2.91 -0.02 3.17 16 43 H 0.21 2.22 8.06 -2.91 -0.02 2.19 16 44 H 0.19 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -78.11 358.40 2.70 -75.41 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.31 Total: 21.05 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 5.63 Total: 8.31 kcal Atomic # 7 Polarization: -128.38 SS G_CDS: -5.16 Total: -133.54 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.04 Total: -22.45 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.03 Total: 52.94 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.73 kcal Total: -78.11 2.70 -75.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316877138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.933 kcal (2) G-P(sol) polarization free energy of solvation -78.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds