Wall clock time and date at job start Tue Mar 31 2020 21:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46649 * 2 1 4 4 N 1.46504 * 109.46679 * 119.99319 * 2 1 3 5 5 C 1.36933 * 120.00168 * 274.99743 * 4 2 1 6 6 H 1.07998 * 120.00275 * 0.02562 * 5 4 2 7 7 C 1.38814 * 120.00088 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99765 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00117 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47519 * 90.00026 * 9 7 5 11 11 H 1.48506 * 109.46980 * 209.99909 * 9 7 5 12 12 H 1.48504 * 109.46929 * 329.99848 * 9 7 5 13 13 C 1.52992 * 109.47267 * 239.99694 * 2 1 3 14 14 H 1.08995 * 109.70288 * 54.70163 * 13 2 1 15 15 C 1.52767 * 109.50835 * 294.58142 * 13 2 1 16 16 C 1.53039 * 109.38299 * 185.70644 * 15 13 2 17 17 C 1.53042 * 109.53915 * 61.24275 * 16 15 13 18 18 C 1.53195 * 109.31155 * 298.63466 * 17 16 15 19 19 N 1.46926 * 108.77515 * 54.63270 * 18 17 16 20 20 C 1.34775 * 120.63049 * 126.36753 * 19 18 17 21 21 O 1.21518 * 120.00206 * 184.32777 * 20 19 18 22 22 C 1.48070 * 120.00011 * 4.32857 * 20 19 18 23 23 C 1.39867 * 120.93259 * 38.26341 * 22 20 19 24 24 C 1.38084 * 119.02110 * 180.25494 * 23 22 20 25 25 N 1.31857 * 120.93825 * 359.40680 * 24 23 22 26 26 C 1.31754 * 122.06961 * 0.63494 * 25 24 23 27 27 C 1.38363 * 120.87156 * 359.65771 * 26 25 24 28 28 Cl 1.73598 * 120.51690 * 180.02562 * 27 26 25 29 29 H 1.09003 * 109.47053 * 65.85087 * 1 2 3 30 30 H 1.09006 * 109.47191 * 185.84682 * 1 2 3 31 31 H 1.09002 * 109.47426 * 305.84699 * 1 2 3 32 32 H 0.97004 * 119.99461 * 95.00703 * 4 2 1 33 33 H 0.97000 * 120.00144 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.56308 * 65.67713 * 15 13 2 35 35 H 1.08996 * 109.36576 * 305.62106 * 15 13 2 36 36 H 1.09001 * 109.46152 * 301.22198 * 16 15 13 37 37 H 1.08994 * 109.46076 * 181.26517 * 16 15 13 38 38 H 1.09000 * 109.49818 * 178.68494 * 17 16 15 39 39 H 1.08998 * 109.49420 * 58.58622 * 17 16 15 40 40 H 1.08997 * 109.58544 * 294.84470 * 18 17 16 41 41 H 1.08996 * 109.70383 * 174.49090 * 18 17 16 42 42 H 1.07999 * 120.49320 * 359.97438 * 23 22 20 43 43 H 1.08004 * 119.53433 * 179.70218 * 24 23 22 44 44 H 1.07998 * 119.56679 * 179.67938 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8919 1.0405 2.4243 7 6 2.6121 -0.6614 3.5092 8 7 2.9260 -1.9383 3.4499 9 14 2.7899 0.2704 5.1183 10 1 1.5223 0.1783 5.8863 11 1 3.8949 -0.3222 5.9140 12 1 3.0939 1.6959 4.8338 13 6 2.0400 -0.7213 -1.2491 14 1 1.6035 -0.2681 -2.1391 15 6 1.6453 -2.1956 -1.1838 16 6 2.2767 -2.9431 -2.3606 17 6 3.8013 -2.8450 -2.2705 18 6 4.2200 -1.3736 -2.3517 19 7 3.5044 -0.6204 -1.3128 20 6 4.1789 0.1443 -0.4314 21 8 3.5842 0.6997 0.4711 22 6 5.6447 0.3076 -0.5628 23 6 6.2454 0.4233 -1.8206 24 6 7.6164 0.5688 -1.8975 25 7 8.3558 0.6110 -0.8065 26 6 7.8323 0.5054 0.3979 27 6 6.4678 0.3510 0.5679 28 17 5.7878 0.2134 2.1592 29 1 -0.3633 0.4204 -0.9378 30 1 -0.3634 -1.0224 0.1047 31 1 -0.3634 0.6018 0.8330 32 1 2.2490 -1.6317 1.1528 33 1 3.2493 -2.3956 4.2420 34 1 0.5603 -2.2857 -1.2357 35 1 2.0020 -2.6241 -0.2472 36 1 1.9389 -2.4983 -3.2966 37 1 1.9776 -3.9907 -2.3279 38 1 4.2508 -3.3972 -3.0959 39 1 4.1377 -3.2673 -1.3236 40 1 3.9649 -0.9748 -3.3334 41 1 5.2946 -1.2879 -2.1904 42 1 5.6462 0.3946 -2.7188 43 1 8.0893 0.6540 -2.8647 44 1 8.4766 0.5402 1.2639 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316877166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:08 Heat of formation + Delta-G solvation = 62.192104 kcal Electronic energy + Delta-G solvation = -29243.647085 eV Core-core repulsion = 25417.454795 eV Total energy + Delta-G solvation = -3826.192290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.77343 -39.49969 -36.91425 -35.96455 -35.35539 -33.00765 -32.21318 -31.69883 -30.96512 -29.61974 -28.02198 -25.75543 -24.05016 -23.85487 -23.53115 -22.84184 -20.85634 -20.13659 -18.94372 -17.18449 -16.93116 -16.52855 -16.19673 -15.46055 -15.11029 -14.93784 -14.53787 -14.26242 -13.99765 -13.96662 -13.82404 -13.52653 -13.16881 -12.92709 -12.75457 -12.22447 -12.17598 -11.98619 -11.83998 -11.49308 -11.37094 -11.12122 -10.91592 -10.71581 -10.65965 -10.54089 -10.48517 -10.37800 -10.11973 -9.84046 -9.61653 -9.47554 -9.32956 -8.77088 -8.63210 -8.29613 -7.94770 -6.53855 -5.45963 -2.66398 0.85569 0.94030 2.54394 3.18758 3.35724 3.55078 3.61936 3.63748 3.84724 4.36312 4.54499 4.70278 4.83283 4.83742 4.91811 5.03818 5.07586 5.20529 5.31925 5.45309 5.49145 5.52176 5.65465 5.72214 5.76871 5.82460 5.90021 5.91013 6.01464 6.09593 6.16367 6.26336 6.30478 6.41089 6.43281 6.50835 6.59666 6.87048 7.00593 7.05837 7.37204 7.77621 7.88408 8.03301 8.70486 8.86821 9.84310 10.39555 10.76468 11.78062 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.009362 B = 0.007531 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.002343 B = 3717.075720 C = 5882.450839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.170 3.830 3 H 0.079 0.921 4 N -0.700 5.700 5 C -0.167 4.167 6 H 0.061 0.939 7 C -0.017 4.017 8 N -0.940 5.940 9 Si 0.872 3.128 10 H -0.296 1.296 11 H -0.297 1.297 12 H -0.284 1.284 13 C 0.149 3.851 14 H 0.063 0.937 15 C -0.134 4.134 16 C -0.116 4.116 17 C -0.136 4.136 18 C 0.100 3.900 19 N -0.604 5.604 20 C 0.528 3.472 21 O -0.413 6.413 22 C -0.066 4.066 23 C -0.144 4.144 24 C 0.083 3.917 25 N -0.466 5.466 26 C 0.101 3.899 27 C -0.055 4.055 28 Cl 0.017 6.983 29 H 0.031 0.969 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.378 0.622 33 H 0.245 0.755 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.147 0.853 43 H 0.161 0.839 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.539 0.823 -16.518 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.060 3.940 3 H 0.097 0.903 4 N -0.342 5.342 5 C -0.299 4.299 6 H 0.079 0.921 7 C -0.210 4.210 8 N -0.592 5.592 9 Si 0.706 3.294 10 H -0.224 1.224 11 H -0.223 1.223 12 H -0.210 1.210 13 C 0.046 3.954 14 H 0.081 0.919 15 C -0.172 4.172 16 C -0.154 4.154 17 C -0.174 4.174 18 C -0.024 4.024 19 N -0.341 5.341 20 C 0.312 3.688 21 O -0.280 6.280 22 C -0.078 4.078 23 C -0.164 4.164 24 C -0.073 4.073 25 N -0.175 5.175 26 C -0.058 4.058 27 C -0.086 4.086 28 Cl 0.046 6.954 29 H 0.050 0.950 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.214 0.786 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.164 0.836 43 H 0.179 0.821 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.047 1.401 -15.769 16.947 hybrid contribution -0.641 -0.159 1.096 1.279 sum 5.406 1.242 -14.673 15.687 Atomic orbital electron populations 1.22580 1.00111 1.00928 0.99300 1.20671 0.90288 0.97606 0.85457 0.90342 1.42401 1.77134 1.09625 1.05021 1.18962 1.31766 0.92942 0.86195 0.92072 1.24354 1.04215 0.95716 0.96744 1.69607 1.53617 1.08314 1.27705 0.86635 0.77263 0.79380 0.86130 1.22402 1.22343 1.21026 1.21520 0.78299 0.96082 0.99508 0.91949 1.21923 1.00519 0.95417 0.99340 1.21498 0.94961 1.00353 0.98556 1.21916 0.96810 0.96113 1.02545 1.22003 0.97492 0.91849 0.91014 1.47677 1.06742 1.47490 1.32143 1.17975 0.85258 0.82846 0.82701 1.91156 1.65742 1.43760 1.27373 1.20660 0.95961 0.98692 0.92494 1.22473 0.96470 1.00174 0.97310 1.22708 0.90505 0.96690 0.97391 1.67606 1.40148 1.11336 0.98423 1.22796 0.90888 0.96374 0.95712 1.22541 0.94355 1.00828 0.90826 1.98568 1.83719 1.94864 1.18224 0.95013 0.93544 0.92899 0.78597 0.94458 0.91032 0.90071 0.92448 0.92136 0.91464 0.91166 0.91986 0.89620 0.83565 0.82140 0.81742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 9.11 37.16 0.34 -2.67 16 2 C 0.17 3.32 1.88 -67.93 -0.13 3.19 16 3 H 0.08 1.70 5.96 -52.08 -0.31 1.39 16 4 N -0.70 -16.67 3.56 -53.43 -0.19 -16.86 16 5 C -0.17 -4.54 7.95 -15.06 -0.12 -4.66 16 6 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 7 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 8 N -0.94 -27.91 13.06 55.49 0.72 -27.19 16 9 Si 0.87 23.29 29.55 -169.99 -5.02 18.26 16 10 H -0.30 -7.94 7.11 56.52 0.40 -7.53 16 11 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 12 H -0.28 -7.54 7.11 56.52 0.40 -7.14 16 13 C 0.15 2.34 2.71 -67.82 -0.18 2.15 16 14 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 15 C -0.13 -1.98 4.84 -26.83 -0.13 -2.11 16 16 C -0.12 -1.35 5.89 -26.69 -0.16 -1.51 16 17 C -0.14 -1.56 6.08 -26.61 -0.16 -1.72 16 18 C 0.10 1.15 4.92 -3.71 -0.02 1.13 16 19 N -0.60 -9.26 2.97 -166.50 -0.50 -9.75 16 20 C 0.53 9.63 6.80 -12.23 -0.08 9.55 16 21 O -0.41 -9.12 8.06 5.35 0.04 -9.08 16 22 C -0.07 -1.06 5.25 -104.62 -0.55 -1.60 16 23 C -0.14 -1.70 7.47 -39.03 -0.29 -1.99 16 24 C 0.08 0.93 11.17 -17.60 -0.20 0.73 16 25 N -0.47 -6.27 10.33 -13.27 -0.14 -6.41 16 26 C 0.10 1.45 10.99 -17.54 -0.19 1.26 16 27 C -0.06 -0.94 6.36 -38.90 -0.25 -1.19 16 28 Cl 0.02 0.35 26.98 -51.86 -1.40 -1.05 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.83 7.01 -51.93 -0.36 0.46 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.38 9.70 5.67 -40.82 -0.23 9.47 16 33 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.07 1.02 7.00 -51.93 -0.36 0.65 16 35 H 0.08 1.51 6.06 -51.93 -0.31 1.20 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 41 H 0.09 0.95 4.49 -51.93 -0.23 0.72 16 42 H 0.15 1.33 6.39 -52.49 -0.34 1.00 16 43 H 0.16 1.19 8.06 -52.48 -0.42 0.76 16 44 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 352.69 15.07 5.31 5.31 Total: -1.00 -31.81 352.69 -9.30 -41.11 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.92 Total: 5.68 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.22 Total: -0.02 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.10 Total: -60.21 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.04 Total: -9.08 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.02 Total: 18.26 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.40 Total: -1.05 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.81 -9.30 -41.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316877166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.300 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds