Wall clock time and date at job start Tue Mar 31 2020 21:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.46649 * 2 1 4 4 N 1.46504 * 109.46679 * 119.99319 * 2 1 3 5 5 C 1.36933 * 120.00168 * 274.99743 * 4 2 1 6 6 H 1.07998 * 120.00275 * 0.02562 * 5 4 2 7 7 C 1.38814 * 120.00088 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99765 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00117 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47519 * 90.00026 * 9 7 5 11 11 H 1.48506 * 109.46980 * 209.99909 * 9 7 5 12 12 H 1.48504 * 109.46929 * 329.99848 * 9 7 5 13 13 C 1.52992 * 109.47267 * 239.99694 * 2 1 3 14 14 H 1.08995 * 109.70288 * 54.70163 * 13 2 1 15 15 C 1.52767 * 109.50835 * 294.58142 * 13 2 1 16 16 C 1.53039 * 109.38299 * 185.70644 * 15 13 2 17 17 C 1.53042 * 109.53915 * 61.24275 * 16 15 13 18 18 C 1.53195 * 109.31155 * 298.63466 * 17 16 15 19 19 N 1.46926 * 108.77515 * 54.63270 * 18 17 16 20 20 C 1.34775 * 120.63049 * 126.36753 * 19 18 17 21 21 O 1.21518 * 120.00206 * 184.32777 * 20 19 18 22 22 C 1.48070 * 120.00011 * 4.32857 * 20 19 18 23 23 C 1.39867 * 120.93259 * 38.26341 * 22 20 19 24 24 C 1.38084 * 119.02110 * 180.25494 * 23 22 20 25 25 N 1.31857 * 120.93825 * 359.40680 * 24 23 22 26 26 C 1.31754 * 122.06961 * 0.63494 * 25 24 23 27 27 C 1.38363 * 120.87156 * 359.65771 * 26 25 24 28 28 Cl 1.73598 * 120.51690 * 180.02562 * 27 26 25 29 29 H 1.09003 * 109.47053 * 65.85087 * 1 2 3 30 30 H 1.09006 * 109.47191 * 185.84682 * 1 2 3 31 31 H 1.09002 * 109.47426 * 305.84699 * 1 2 3 32 32 H 0.97004 * 119.99461 * 95.00703 * 4 2 1 33 33 H 0.97000 * 120.00144 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.56308 * 65.67713 * 15 13 2 35 35 H 1.08996 * 109.36576 * 305.62106 * 15 13 2 36 36 H 1.09001 * 109.46152 * 301.22198 * 16 15 13 37 37 H 1.08994 * 109.46076 * 181.26517 * 16 15 13 38 38 H 1.09000 * 109.49818 * 178.68494 * 17 16 15 39 39 H 1.08998 * 109.49420 * 58.58622 * 17 16 15 40 40 H 1.08997 * 109.58544 * 294.84470 * 18 17 16 41 41 H 1.08996 * 109.70383 * 174.49090 * 18 17 16 42 42 H 1.07999 * 120.49320 * 359.97438 * 23 22 20 43 43 H 1.08004 * 119.53433 * 179.70218 * 24 23 22 44 44 H 1.07998 * 119.56679 * 179.67938 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8919 1.0405 2.4243 7 6 2.6121 -0.6614 3.5092 8 7 2.9260 -1.9383 3.4499 9 14 2.7899 0.2704 5.1183 10 1 1.5223 0.1783 5.8863 11 1 3.8949 -0.3222 5.9140 12 1 3.0939 1.6959 4.8338 13 6 2.0400 -0.7213 -1.2491 14 1 1.6035 -0.2681 -2.1391 15 6 1.6453 -2.1956 -1.1838 16 6 2.2767 -2.9431 -2.3606 17 6 3.8013 -2.8450 -2.2705 18 6 4.2200 -1.3736 -2.3517 19 7 3.5044 -0.6204 -1.3128 20 6 4.1789 0.1443 -0.4314 21 8 3.5842 0.6997 0.4711 22 6 5.6447 0.3076 -0.5628 23 6 6.2454 0.4233 -1.8206 24 6 7.6164 0.5688 -1.8975 25 7 8.3558 0.6110 -0.8065 26 6 7.8323 0.5054 0.3979 27 6 6.4678 0.3510 0.5679 28 17 5.7878 0.2134 2.1592 29 1 -0.3633 0.4204 -0.9378 30 1 -0.3634 -1.0224 0.1047 31 1 -0.3634 0.6018 0.8330 32 1 2.2490 -1.6317 1.1528 33 1 3.2493 -2.3956 4.2420 34 1 0.5603 -2.2857 -1.2357 35 1 2.0020 -2.6241 -0.2472 36 1 1.9389 -2.4983 -3.2966 37 1 1.9776 -3.9907 -2.3279 38 1 4.2508 -3.3972 -3.0959 39 1 4.1377 -3.2673 -1.3236 40 1 3.9649 -0.9748 -3.3334 41 1 5.2946 -1.2879 -2.1904 42 1 5.6462 0.3946 -2.7188 43 1 8.0893 0.6540 -2.8647 44 1 8.4766 0.5402 1.2639 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316877166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:07 Heat of formation + Delta-G solvation = 41.852765 kcal Electronic energy + Delta-G solvation = -29244.529065 eV Core-core repulsion = 25417.454795 eV Total energy + Delta-G solvation = -3827.074270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95905 -40.66550 -38.17102 -37.34528 -36.89752 -34.40873 -33.79836 -32.92055 -32.05223 -31.14473 -29.63043 -26.96098 -25.69896 -25.03463 -24.76089 -24.16957 -21.98087 -21.49336 -20.18012 -19.01042 -18.25975 -17.70475 -17.32531 -16.81193 -16.36632 -16.20762 -16.05267 -15.64403 -15.51428 -15.13059 -15.01789 -14.80158 -14.45124 -14.36046 -13.96657 -13.81700 -13.53014 -13.19828 -13.08727 -12.99274 -12.85704 -12.81845 -12.60224 -12.28483 -12.15202 -11.99482 -11.93662 -11.66837 -11.52363 -11.35677 -11.25256 -10.80634 -10.74755 -10.53168 -9.92085 -9.68803 -9.29008 -8.50517 -7.67466 -4.81984 -0.28181 -0.10212 1.19799 1.38799 1.42915 1.44895 1.93631 2.21753 2.68619 2.72043 3.39530 3.43965 3.67608 3.70840 3.80689 3.94039 3.99269 4.08099 4.15223 4.21636 4.32846 4.39678 4.45582 4.54222 4.65195 4.70060 4.73405 4.84880 4.90198 4.95155 4.99070 5.06671 5.13400 5.18177 5.30406 5.34454 5.44375 5.51329 5.58921 5.64649 5.76200 5.97695 6.54043 6.65311 6.74782 7.54132 7.65555 8.40504 8.65383 9.57231 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.009362 B = 0.007531 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.002343 B = 3717.075720 C = 5882.450839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.164 3.836 3 H 0.057 0.943 4 N -0.699 5.699 5 C -0.136 4.136 6 H 0.044 0.956 7 C -0.060 4.060 8 N -0.965 5.965 9 Si 0.905 3.095 10 H -0.298 1.298 11 H -0.305 1.305 12 H -0.286 1.286 13 C 0.154 3.846 14 H 0.099 0.901 15 C -0.128 4.128 16 C -0.109 4.109 17 C -0.133 4.133 18 C 0.094 3.906 19 N -0.601 5.601 20 C 0.521 3.479 21 O -0.469 6.469 22 C -0.086 4.086 23 C -0.125 4.125 24 C 0.101 3.899 25 N -0.473 5.473 26 C 0.101 3.899 27 C -0.081 4.081 28 Cl -0.035 7.035 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.026 0.974 32 H 0.369 0.631 33 H 0.234 0.766 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.032 0.968 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.184 0.816 43 H 0.212 0.788 44 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.125 0.857 -21.725 22.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 H 0.075 0.925 4 N -0.339 5.339 5 C -0.269 4.269 6 H 0.062 0.938 7 C -0.250 4.250 8 N -0.620 5.620 9 Si 0.740 3.260 10 H -0.226 1.226 11 H -0.233 1.233 12 H -0.212 1.212 13 C 0.050 3.950 14 H 0.117 0.883 15 C -0.167 4.167 16 C -0.146 4.146 17 C -0.172 4.172 18 C -0.028 4.028 19 N -0.337 5.337 20 C 0.306 3.694 21 O -0.340 6.340 22 C -0.098 4.098 23 C -0.145 4.145 24 C -0.056 4.056 25 N -0.182 5.182 26 C -0.056 4.056 27 C -0.111 4.111 28 Cl -0.006 7.006 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.203 0.797 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.050 0.950 40 H 0.124 0.876 41 H 0.109 0.891 42 H 0.202 0.798 43 H 0.228 0.772 44 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.623 1.446 -21.034 22.099 hybrid contribution -0.773 -0.107 2.447 2.568 sum 5.850 1.339 -18.587 19.532 Atomic orbital electron populations 1.22415 0.98581 1.00589 1.00305 1.20778 0.91125 0.96716 0.85786 0.92495 1.42443 1.76882 1.09031 1.05537 1.18923 1.28747 0.91910 0.87333 0.93817 1.24585 1.06030 0.96158 0.98244 1.69705 1.55977 1.09125 1.27238 0.86061 0.76677 0.78557 0.84661 1.22638 1.23277 1.21241 1.21461 0.78867 0.96224 0.98411 0.88337 1.21842 1.01075 0.94978 0.98788 1.21476 0.94729 1.00406 0.98034 1.21915 0.96899 0.96383 1.01961 1.22359 0.97497 0.91415 0.91484 1.47811 1.06740 1.46844 1.32289 1.18416 0.86242 0.82373 0.82364 1.91117 1.67023 1.46264 1.29621 1.20695 0.94872 1.00184 0.94004 1.22840 0.97110 0.97996 0.96535 1.23557 0.90226 0.93388 0.98445 1.67738 1.40410 1.11596 0.98498 1.22894 0.89882 0.96004 0.96851 1.22655 0.95490 1.03987 0.88946 1.98541 1.84607 1.95534 1.21942 0.91164 0.93743 0.95432 0.79726 0.95627 0.90383 0.94765 0.89293 0.91635 0.87972 0.94953 0.87628 0.89103 0.79849 0.77197 0.80874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.53 9.11 71.98 0.66 -4.87 16 2 C 0.16 6.42 1.88 44.99 0.08 6.51 16 3 H 0.06 2.53 5.96 -4.68 -0.03 2.50 16 4 N -0.70 -34.55 3.56 -322.95 -1.15 -35.70 16 5 C -0.14 -7.73 7.95 84.03 0.67 -7.07 16 6 H 0.04 2.62 7.83 -2.91 -0.02 2.60 16 7 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 8 N -0.96 -60.16 13.06 21.65 0.28 -59.87 16 9 Si 0.91 50.01 29.55 68.60 2.03 52.04 16 10 H -0.30 -16.28 7.11 99.48 0.71 -15.57 16 11 H -0.31 -17.14 7.11 99.48 0.71 -16.43 16 12 H -0.29 -15.65 7.11 99.48 0.71 -14.95 16 13 C 0.15 4.47 2.71 44.83 0.12 4.59 16 14 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 15 C -0.13 -3.59 4.84 30.53 0.15 -3.44 16 16 C -0.11 -2.12 5.89 30.62 0.18 -1.94 16 17 C -0.13 -2.58 6.08 30.67 0.19 -2.40 16 18 C 0.09 1.73 4.92 86.36 0.42 2.16 16 19 N -0.60 -17.11 2.97 -798.98 -2.38 -19.49 16 20 C 0.52 18.81 6.80 86.85 0.59 19.40 16 21 O -0.47 -21.41 8.06 -3.77 -0.03 -21.44 16 22 C -0.09 -2.64 5.25 -19.86 -0.10 -2.75 16 23 C -0.12 -2.43 7.47 22.63 0.17 -2.26 16 24 C 0.10 1.75 11.17 84.65 0.95 2.69 16 25 N -0.47 -11.39 10.33 -195.90 -2.02 -13.42 16 26 C 0.10 2.85 10.99 84.73 0.93 3.79 16 27 C -0.08 -2.79 6.36 22.71 0.14 -2.64 16 28 Cl -0.04 -1.57 26.98 -2.72 -0.07 -1.64 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.04 1.55 7.01 -2.38 -0.02 1.53 16 31 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.37 19.78 5.67 -92.71 -0.53 19.26 16 33 H 0.23 14.73 8.31 -92.71 -0.77 13.96 16 34 H 0.08 2.05 7.00 -2.39 -0.02 2.03 16 35 H 0.03 1.29 6.06 -2.39 -0.01 1.28 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.11 1.15 8.12 -2.39 -0.02 1.13 16 41 H 0.09 1.60 4.49 -2.39 -0.01 1.59 16 42 H 0.18 2.16 6.39 -2.91 -0.02 2.15 16 43 H 0.21 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.17 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -76.87 352.69 2.76 -74.11 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.49 Total: 16.74 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 5.61 Total: 8.67 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -5.27 Total: -128.48 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.03 Total: -21.44 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.03 Total: 52.04 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.07 Total: -1.64 kcal Total: -76.87 2.76 -74.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316877166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.965 kcal (2) G-P(sol) polarization free energy of solvation -76.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds