Wall clock time and date at job start Tue Mar 31 2020 21:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47295 * 2 1 4 4 N 1.46491 * 109.47222 * 120.00452 * 2 1 3 5 5 C 1.36944 * 120.00080 * 286.93306 * 4 2 1 6 6 H 1.08001 * 119.99443 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00329 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99510 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46968 * 60.00326 * 9 7 5 11 11 H 1.48497 * 109.46966 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47197 * 300.00336 * 9 7 5 13 13 C 1.53005 * 109.46851 * 240.00266 * 2 1 3 14 14 H 1.09004 * 109.58455 * 286.39757 * 13 2 1 15 15 C 1.53199 * 109.58442 * 46.82365 * 13 2 1 16 16 C 1.53042 * 109.30846 * 174.42178 * 15 13 2 17 17 C 1.53035 * 109.54013 * 298.63710 * 16 15 13 18 18 C 1.53193 * 109.31615 * 61.36255 * 17 16 15 19 19 N 1.46922 * 109.58461 * 166.11299 * 13 2 1 20 20 C 1.34772 * 120.63309 * 6.58266 * 19 13 2 21 21 O 1.21523 * 119.99966 * 359.82767 * 20 19 13 22 22 C 1.48107 * 120.00181 * 179.82863 * 20 19 13 23 23 C 1.39354 * 119.70987 * 160.30130 * 22 20 19 24 24 C 1.38523 * 119.07448 * 179.79472 * 23 22 20 25 25 C 1.38764 * 118.48082 * 0.47751 * 24 23 22 26 26 Cl 1.73598 * 120.33890 * 179.76685 * 25 24 23 27 27 C 1.38720 * 119.32622 * 359.74739 * 25 24 23 28 28 N 1.31490 * 120.87649 * 0.02562 * 27 25 24 29 29 H 1.09007 * 109.46767 * 299.99919 * 1 2 3 30 30 H 1.09000 * 109.47053 * 59.99140 * 1 2 3 31 31 H 1.08994 * 109.47512 * 179.97438 * 1 2 3 32 32 H 0.97000 * 120.00503 * 106.93504 * 4 2 1 33 33 H 0.97005 * 119.99249 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.49772 * 294.37238 * 15 13 2 35 35 H 1.08991 * 109.49867 * 54.47268 * 15 13 2 36 36 H 1.09004 * 109.45926 * 178.61165 * 16 15 13 37 37 H 1.09003 * 109.45829 * 58.65805 * 16 15 13 38 38 H 1.09009 * 109.49772 * 301.41262 * 17 16 15 39 39 H 1.08997 * 109.52562 * 181.33405 * 17 16 15 40 40 H 1.09002 * 109.58849 * 185.57714 * 18 17 16 41 41 H 1.09007 * 109.70223 * 65.22633 * 18 17 16 42 42 H 1.07998 * 120.45530 * 0.02562 * 23 22 20 43 43 H 1.08002 * 120.75558 * 180.20577 * 24 23 22 44 44 H 1.07999 * 119.56490 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.9210 -0.0886 2.4221 6 1 1.4837 0.8953 2.5073 7 6 2.3832 -0.7432 3.5556 8 7 2.9156 -1.9424 3.4517 9 14 2.2496 0.0779 5.2281 10 1 0.8225 0.3551 5.5309 11 1 2.8109 -0.8220 6.2675 12 1 3.0098 1.3535 5.2155 13 6 2.0400 -0.7212 -1.2493 14 1 1.8884 -1.7950 -1.1388 15 6 1.2800 -0.2163 -2.4799 16 6 1.8877 -0.8370 -3.7399 17 6 3.3514 -0.4086 -3.8667 18 6 4.1348 -0.9156 -2.6518 19 7 3.4710 -0.4417 -1.4297 20 6 4.1617 0.2368 -0.4922 21 8 3.6004 0.6265 0.5127 22 6 5.6048 0.5075 -0.6866 23 6 6.2199 1.5269 0.0375 24 6 7.5712 1.7660 -0.1515 25 6 8.2600 0.9829 -1.0669 26 17 9.9533 1.2449 -1.3461 27 6 7.5820 -0.0117 -1.7562 28 7 6.2995 -0.2193 -1.5532 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 2.4107 -1.5744 1.1196 33 1 3.2382 -2.4000 4.2438 34 1 0.2312 -0.5028 -2.4027 35 1 1.3578 0.8694 -2.5354 36 1 1.3331 -0.4986 -4.6152 37 1 1.8318 -1.9235 -3.6727 38 1 3.4098 0.6791 -3.9092 39 1 3.7772 -0.8315 -4.7766 40 1 5.1538 -0.5301 -2.6872 41 1 4.1561 -2.0055 -2.6570 42 1 5.6518 2.1198 0.7390 43 1 8.0761 2.5469 0.3977 44 1 8.1142 -0.6232 -2.4698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316878267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:36 Heat of formation + Delta-G solvation = 62.267164 kcal Electronic energy + Delta-G solvation = -28268.138527 eV Core-core repulsion = 24441.949491 eV Total energy + Delta-G solvation = -3826.189036 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.86448 -39.47200 -37.00264 -36.76073 -35.16518 -33.16157 -32.19616 -32.14324 -31.03219 -29.79832 -27.73160 -25.68836 -24.25451 -23.88047 -23.64397 -22.57224 -20.88631 -19.94334 -19.40859 -17.34817 -17.08223 -16.62772 -16.38742 -15.34509 -15.17789 -14.95237 -14.68172 -14.43330 -14.00601 -13.82440 -13.58783 -13.47804 -13.32297 -12.99091 -12.79728 -12.46919 -12.37726 -12.11683 -11.99134 -11.93100 -11.55145 -11.26027 -11.12447 -10.91149 -10.74909 -10.65234 -10.57832 -10.46028 -10.17470 -10.01192 -9.74418 -9.43446 -9.15638 -9.07110 -8.67789 -8.35577 -7.95156 -6.55374 -5.51850 -2.70900 0.51219 0.99469 1.77685 3.02045 3.36795 3.56489 3.60339 3.61418 3.86971 4.19378 4.50862 4.63941 4.77107 4.78485 4.96822 5.05323 5.07004 5.14254 5.33141 5.52827 5.57846 5.66230 5.71744 5.75335 5.81175 5.82183 5.94929 5.99425 6.10575 6.14052 6.18944 6.20170 6.24051 6.39548 6.47995 6.53624 6.59299 6.82040 7.02364 7.07321 7.42743 7.53049 7.92328 7.98522 8.65513 8.85823 9.76813 10.34891 10.70081 11.72126 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.009104 B = 0.004848 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.995302 B = 5774.496042 C = 8325.633118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.176 3.824 3 H 0.065 0.935 4 N -0.692 5.692 5 C -0.186 4.186 6 H 0.064 0.936 7 C -0.026 4.026 8 N -0.942 5.942 9 Si 0.899 3.101 10 H -0.290 1.290 11 H -0.295 1.295 12 H -0.290 1.290 13 C 0.146 3.854 14 H 0.067 0.933 15 C -0.126 4.126 16 C -0.120 4.120 17 C -0.134 4.134 18 C 0.076 3.924 19 N -0.593 5.593 20 C 0.528 3.472 21 O -0.429 6.429 22 C 0.105 3.895 23 C -0.103 4.103 24 C -0.069 4.069 25 C -0.084 4.084 26 Cl -0.059 7.059 27 C 0.104 3.896 28 N -0.438 5.438 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.378 0.622 33 H 0.249 0.751 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.139 0.861 41 H 0.057 0.943 42 H 0.158 0.842 43 H 0.149 0.851 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.345 5.491 -17.514 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.067 3.933 3 H 0.082 0.918 4 N -0.332 5.332 5 C -0.318 4.318 6 H 0.082 0.918 7 C -0.220 4.220 8 N -0.593 5.593 9 Si 0.732 3.268 10 H -0.218 1.218 11 H -0.221 1.221 12 H -0.218 1.218 13 C 0.043 3.957 14 H 0.085 0.915 15 C -0.165 4.165 16 C -0.158 4.158 17 C -0.173 4.173 18 C -0.047 4.047 19 N -0.329 5.329 20 C 0.311 3.689 21 O -0.297 6.297 22 C -0.032 4.032 23 C -0.124 4.124 24 C -0.095 4.095 25 C -0.113 4.113 26 Cl -0.030 7.030 27 C -0.055 4.055 28 N -0.151 5.151 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.211 0.789 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.155 0.845 41 H 0.076 0.924 42 H 0.175 0.825 43 H 0.167 0.833 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 7.682 5.207 -17.205 19.549 hybrid contribution 0.815 0.582 1.339 1.672 sum 8.497 5.789 -15.867 18.907 Atomic orbital electron populations 1.22586 0.99726 1.00678 0.99969 1.20540 0.90537 0.97135 0.85102 0.91783 1.42312 1.70962 1.18339 1.01594 1.19021 1.29819 0.98819 0.84153 0.91795 1.24584 1.02985 0.97087 0.97312 1.69645 1.48091 1.13695 1.27838 0.86355 0.77289 0.78182 0.84976 1.21765 1.22141 1.21781 1.21545 0.78998 0.99625 0.95562 0.91482 1.22008 0.99635 1.00816 0.94052 1.21547 0.95896 1.00658 0.97684 1.21953 0.95927 1.01041 0.98339 1.22778 1.00117 0.99325 0.82530 1.47617 1.09369 1.55992 1.19885 1.17870 0.84337 0.82366 0.84295 1.91260 1.66161 1.46872 1.25365 1.21887 0.96095 0.92742 0.92523 1.22154 0.94053 0.97517 0.98666 1.21541 0.93864 0.98480 0.95619 1.22221 0.86846 1.00629 1.01582 1.98378 1.13239 1.95979 1.95448 1.22933 0.90199 0.94501 0.97914 1.67783 1.06391 1.25450 1.15431 0.92711 0.94339 0.93701 0.78887 0.94085 0.90580 0.91743 0.92373 0.92012 0.92232 0.91544 0.84451 0.92420 0.82478 0.83347 0.81532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 8.59 37.16 0.32 -2.82 16 2 C 0.18 3.63 1.84 -67.93 -0.13 3.50 16 3 H 0.06 1.44 6.12 -51.93 -0.32 1.12 16 4 N -0.69 -17.77 3.38 -53.43 -0.18 -17.95 16 5 C -0.19 -5.32 8.38 -15.06 -0.13 -5.44 16 6 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 7 C -0.03 -0.77 5.50 -17.43 -0.10 -0.87 16 8 N -0.94 -29.62 13.06 55.49 0.72 -28.89 16 9 Si 0.90 23.55 29.55 -169.99 -5.02 18.52 16 10 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 11 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 12 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 13 C 0.15 2.49 2.63 -67.60 -0.18 2.31 16 14 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 15 C -0.13 -1.68 4.37 -26.61 -0.12 -1.80 16 16 C -0.12 -1.34 5.88 -26.69 -0.16 -1.50 16 17 C -0.13 -1.48 6.08 -26.61 -0.16 -1.65 16 18 C 0.08 1.01 6.00 -3.71 -0.02 0.99 16 19 N -0.59 -9.92 2.97 -166.22 -0.49 -10.42 16 20 C 0.53 10.05 7.39 -12.21 -0.09 9.96 16 21 O -0.43 -9.89 9.64 5.35 0.05 -9.84 16 22 C 0.11 1.69 6.50 -83.01 -0.54 1.15 16 23 C -0.10 -1.47 9.62 -39.06 -0.38 -1.85 16 24 C -0.07 -0.79 9.97 -39.28 -0.39 -1.18 16 25 C -0.08 -0.91 6.35 -39.21 -0.25 -1.16 16 26 Cl -0.06 -0.55 28.99 -51.86 -1.50 -2.06 16 27 C 0.10 1.16 10.98 -17.52 -0.19 0.97 16 28 N -0.44 -6.06 6.27 -9.77 -0.06 -6.12 16 29 H 0.05 1.11 7.98 -51.92 -0.41 0.69 16 30 H 0.04 0.59 6.45 -51.93 -0.33 0.25 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.38 10.58 7.67 -40.82 -0.31 10.27 16 33 H 0.25 7.69 8.31 -40.82 -0.34 7.36 16 34 H 0.08 0.95 6.71 -51.93 -0.35 0.61 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.14 1.81 3.90 -84.33 -0.33 1.48 16 41 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 42 H 0.16 2.29 7.77 -52.49 -0.41 1.89 16 43 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.17 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 359.22 15.07 5.41 5.41 Total: -1.00 -32.72 359.22 -9.81 -42.53 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -6.24 Total: 8.18 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.50 Total: 0.63 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: -0.01 Total: -63.38 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.05 Total: -9.84 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.02 Total: 18.52 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.72 -9.81 -42.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316878267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.798 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds