Wall clock time and date at job start Tue Mar 31 2020 21:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47295 * 2 1 4 4 N 1.46491 * 109.47222 * 120.00452 * 2 1 3 5 5 C 1.36944 * 120.00080 * 286.93306 * 4 2 1 6 6 H 1.08001 * 119.99443 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00329 * 179.97438 * 5 4 2 8 8 N 1.31622 * 119.99510 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46968 * 60.00326 * 9 7 5 11 11 H 1.48497 * 109.46966 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47197 * 300.00336 * 9 7 5 13 13 C 1.53005 * 109.46851 * 240.00266 * 2 1 3 14 14 H 1.09004 * 109.58455 * 286.39757 * 13 2 1 15 15 C 1.53199 * 109.58442 * 46.82365 * 13 2 1 16 16 C 1.53042 * 109.30846 * 174.42178 * 15 13 2 17 17 C 1.53035 * 109.54013 * 298.63710 * 16 15 13 18 18 C 1.53193 * 109.31615 * 61.36255 * 17 16 15 19 19 N 1.46922 * 109.58461 * 166.11299 * 13 2 1 20 20 C 1.34772 * 120.63309 * 6.58266 * 19 13 2 21 21 O 1.21523 * 119.99966 * 359.82767 * 20 19 13 22 22 C 1.48107 * 120.00181 * 179.82863 * 20 19 13 23 23 C 1.39354 * 119.70987 * 160.30130 * 22 20 19 24 24 C 1.38523 * 119.07448 * 179.79472 * 23 22 20 25 25 C 1.38764 * 118.48082 * 0.47751 * 24 23 22 26 26 Cl 1.73598 * 120.33890 * 179.76685 * 25 24 23 27 27 C 1.38720 * 119.32622 * 359.74739 * 25 24 23 28 28 N 1.31490 * 120.87649 * 0.02562 * 27 25 24 29 29 H 1.09007 * 109.46767 * 299.99919 * 1 2 3 30 30 H 1.09000 * 109.47053 * 59.99140 * 1 2 3 31 31 H 1.08994 * 109.47512 * 179.97438 * 1 2 3 32 32 H 0.97000 * 120.00503 * 106.93504 * 4 2 1 33 33 H 0.97005 * 119.99249 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.49772 * 294.37238 * 15 13 2 35 35 H 1.08991 * 109.49867 * 54.47268 * 15 13 2 36 36 H 1.09004 * 109.45926 * 178.61165 * 16 15 13 37 37 H 1.09003 * 109.45829 * 58.65805 * 16 15 13 38 38 H 1.09009 * 109.49772 * 301.41262 * 17 16 15 39 39 H 1.08997 * 109.52562 * 181.33405 * 17 16 15 40 40 H 1.09002 * 109.58849 * 185.57714 * 18 17 16 41 41 H 1.09007 * 109.70223 * 65.22633 * 18 17 16 42 42 H 1.07998 * 120.45530 * 0.02562 * 23 22 20 43 43 H 1.08002 * 120.75558 * 180.20577 * 24 23 22 44 44 H 1.07999 * 119.56490 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.9210 -0.0886 2.4221 6 1 1.4837 0.8953 2.5073 7 6 2.3832 -0.7432 3.5556 8 7 2.9156 -1.9424 3.4517 9 14 2.2496 0.0779 5.2281 10 1 0.8225 0.3551 5.5309 11 1 2.8109 -0.8220 6.2675 12 1 3.0098 1.3535 5.2155 13 6 2.0400 -0.7212 -1.2493 14 1 1.8884 -1.7950 -1.1388 15 6 1.2800 -0.2163 -2.4799 16 6 1.8877 -0.8370 -3.7399 17 6 3.3514 -0.4086 -3.8667 18 6 4.1348 -0.9156 -2.6518 19 7 3.4710 -0.4417 -1.4297 20 6 4.1617 0.2368 -0.4922 21 8 3.6004 0.6265 0.5127 22 6 5.6048 0.5075 -0.6866 23 6 6.2199 1.5269 0.0375 24 6 7.5712 1.7660 -0.1515 25 6 8.2600 0.9829 -1.0669 26 17 9.9533 1.2449 -1.3461 27 6 7.5820 -0.0117 -1.7562 28 7 6.2995 -0.2193 -1.5532 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 2.4107 -1.5744 1.1196 33 1 3.2382 -2.4000 4.2438 34 1 0.2312 -0.5028 -2.4027 35 1 1.3578 0.8694 -2.5354 36 1 1.3331 -0.4986 -4.6152 37 1 1.8318 -1.9235 -3.6727 38 1 3.4098 0.6791 -3.9092 39 1 3.7772 -0.8315 -4.7766 40 1 5.1538 -0.5301 -2.6872 41 1 4.1561 -2.0055 -2.6570 42 1 5.6518 2.1198 0.7390 43 1 8.0761 2.5469 0.3977 44 1 8.1142 -0.6232 -2.4698 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316878267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:35 Heat of formation + Delta-G solvation = 42.248430 kcal Electronic energy + Delta-G solvation = -28269.006605 eV Core-core repulsion = 24441.949491 eV Total energy + Delta-G solvation = -3827.057113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.06796 -40.69103 -38.23891 -37.73439 -36.83002 -34.43924 -33.90133 -33.29165 -32.12917 -31.45184 -29.33615 -26.99069 -25.98542 -24.93566 -24.78581 -24.05319 -22.09383 -21.39051 -20.68895 -19.05130 -18.16176 -18.09950 -17.49857 -16.79357 -16.64087 -16.24496 -16.03374 -15.60750 -15.49523 -15.14747 -14.95050 -14.83284 -14.54160 -14.28546 -14.16544 -13.87779 -13.55476 -13.48811 -13.35050 -13.04579 -12.96407 -12.75727 -12.60149 -12.43684 -12.31282 -12.12705 -11.93874 -11.68648 -11.61228 -11.49249 -11.24328 -11.01931 -10.81137 -10.36443 -10.08785 -9.73471 -9.37603 -8.61839 -7.76766 -4.95704 -0.55803 0.00590 0.87005 1.43960 1.47708 1.52915 1.81186 2.09762 2.64541 2.67250 3.09602 3.55006 3.57003 3.62351 3.76084 3.86161 3.89576 3.98715 4.10037 4.20868 4.33928 4.41502 4.46376 4.59021 4.67909 4.70788 4.77551 4.81942 4.90857 4.95835 5.04195 5.10570 5.12425 5.16327 5.20947 5.26673 5.43696 5.44424 5.54378 5.62213 5.64933 5.99254 6.44282 6.44930 6.66588 7.43652 7.51507 8.28743 8.51958 9.48490 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.009104 B = 0.004848 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.995302 B = 5774.496042 C = 8325.633118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.176 3.824 3 H 0.045 0.955 4 N -0.701 5.701 5 C -0.171 4.171 6 H 0.058 0.942 7 C -0.092 4.092 8 N -0.981 5.981 9 Si 0.958 3.042 10 H -0.282 1.282 11 H -0.300 1.300 12 H -0.288 1.288 13 C 0.148 3.852 14 H 0.053 0.947 15 C -0.118 4.118 16 C -0.116 4.116 17 C -0.127 4.127 18 C 0.070 3.930 19 N -0.592 5.592 20 C 0.523 3.477 21 O -0.488 6.488 22 C 0.078 3.922 23 C -0.114 4.114 24 C -0.061 4.061 25 C -0.073 4.073 26 Cl -0.034 7.034 27 C 0.108 3.892 28 N -0.443 5.443 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.361 0.639 33 H 0.240 0.760 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.145 0.855 41 H 0.056 0.944 42 H 0.143 0.857 43 H 0.176 0.824 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.685 6.221 -20.439 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.068 3.932 3 H 0.062 0.938 4 N -0.339 5.339 5 C -0.304 4.304 6 H 0.076 0.924 7 C -0.281 4.281 8 N -0.636 5.636 9 Si 0.790 3.210 10 H -0.208 1.208 11 H -0.227 1.227 12 H -0.215 1.215 13 C 0.044 3.956 14 H 0.071 0.929 15 C -0.157 4.157 16 C -0.154 4.154 17 C -0.165 4.165 18 C -0.052 4.052 19 N -0.326 5.326 20 C 0.308 3.692 21 O -0.359 6.359 22 C -0.058 4.058 23 C -0.135 4.135 24 C -0.087 4.087 25 C -0.102 4.102 26 Cl -0.005 7.005 27 C -0.052 4.052 28 N -0.156 5.156 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.192 0.808 33 H 0.049 0.951 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.161 0.839 41 H 0.074 0.926 42 H 0.161 0.839 43 H 0.193 0.807 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 9.009 5.970 -20.217 22.924 hybrid contribution 0.631 0.435 2.029 2.169 sum 9.639 6.405 -18.187 21.557 Atomic orbital electron populations 1.22443 0.97991 1.00769 1.00696 1.20620 0.91502 0.96075 0.85031 0.93756 1.42366 1.71455 1.17730 1.02367 1.19220 1.27610 0.98092 0.85503 0.92377 1.25237 1.04392 0.97987 1.00516 1.69813 1.50693 1.15254 1.27862 0.85395 0.77470 0.77044 0.81123 1.20825 1.22676 1.21523 1.21478 0.79962 0.98378 0.95778 0.92860 1.21959 0.99807 1.00772 0.93162 1.21545 0.95994 1.00665 0.97162 1.21918 0.95653 1.00967 0.97969 1.23013 1.00832 0.99244 0.82100 1.47826 1.09320 1.54947 1.20464 1.18431 0.85747 0.81275 0.83745 1.91219 1.67636 1.49721 1.27360 1.21513 0.94955 0.94547 0.94776 1.22122 0.95391 0.97409 0.98592 1.21784 0.92581 0.98873 0.95485 1.22329 0.87960 0.99594 1.00322 1.98399 1.11143 1.95793 1.95199 1.23509 0.89255 0.94512 0.97895 1.67706 1.07660 1.25154 1.15037 0.94989 0.90512 0.93846 0.80777 0.95084 0.89397 0.91812 0.89745 0.91785 0.92425 0.88698 0.83906 0.92566 0.83893 0.80695 0.78053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.95 8.59 71.98 0.62 -5.33 16 2 C 0.18 7.50 1.84 45.00 0.08 7.58 16 3 H 0.04 2.10 6.12 -2.39 -0.01 2.09 16 4 N -0.70 -37.90 3.38 -322.94 -1.09 -38.99 16 5 C -0.17 -10.24 8.38 84.03 0.70 -9.54 16 6 H 0.06 3.46 7.83 -2.91 -0.02 3.44 16 7 C -0.09 -5.69 5.50 84.86 0.47 -5.22 16 8 N -0.98 -64.63 13.06 21.65 0.28 -64.35 16 9 Si 0.96 50.34 29.55 68.60 2.03 52.36 16 10 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 11 H -0.30 -15.86 7.11 99.48 0.71 -15.15 16 12 H -0.29 -14.80 7.11 99.48 0.71 -14.09 16 13 C 0.15 5.08 2.63 44.98 0.12 5.20 16 14 H 0.05 1.98 8.09 -2.39 -0.02 1.96 16 15 C -0.12 -2.94 4.37 30.68 0.13 -2.81 16 16 C -0.12 -2.23 5.88 30.62 0.18 -2.05 16 17 C -0.13 -2.44 6.08 30.67 0.19 -2.25 16 18 C 0.07 1.78 6.00 86.36 0.52 2.30 16 19 N -0.59 -20.09 2.97 -798.08 -2.37 -22.46 16 20 C 0.52 20.82 7.39 86.86 0.64 21.46 16 21 O -0.49 -23.92 9.64 -3.79 -0.04 -23.96 16 22 C 0.08 2.56 6.50 41.90 0.27 2.83 16 23 C -0.11 -3.32 9.62 22.61 0.22 -3.10 16 24 C -0.06 -1.30 9.97 22.46 0.22 -1.08 16 25 C -0.07 -1.39 6.35 22.51 0.14 -1.25 16 26 Cl -0.03 -0.53 28.99 -2.72 -0.08 -0.60 16 27 C 0.11 2.13 10.98 84.86 0.93 3.06 16 28 N -0.44 -11.77 6.27 -184.82 -1.16 -12.93 16 29 H 0.03 1.31 7.98 -2.38 -0.02 1.29 16 30 H 0.08 2.25 6.45 -2.39 -0.02 2.23 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.36 21.45 7.67 -92.71 -0.71 20.74 16 33 H 0.24 15.54 8.31 -92.70 -0.77 14.77 16 34 H 0.09 1.98 6.71 -2.39 -0.02 1.97 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.14 3.55 3.90 -66.37 -0.26 3.29 16 41 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.14 4.49 7.77 -2.91 -0.02 4.47 16 43 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 44 H 0.20 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -75.97 359.22 3.08 -72.89 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.07 Total: 28.23 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.44 Total: 9.82 kcal Atomic # 7 Polarization: -134.40 SS G_CDS: -4.34 Total: -138.74 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.04 Total: -23.96 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 2.03 Total: 52.36 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.60 kcal Total: -75.97 3.08 -72.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316878267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.137 kcal (2) G-P(sol) polarization free energy of solvation -75.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds