Wall clock time and date at job start Tue Mar 31 2020 21:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47290 * 2 1 4 4 N 1.46499 * 109.47068 * 120.00148 * 2 1 3 5 5 C 1.36941 * 120.00033 * 274.99598 * 4 2 1 6 6 H 1.08003 * 119.99493 * 0.02562 * 5 4 2 7 7 C 1.38814 * 120.00125 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99746 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00001 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46841 * 89.99969 * 9 7 5 11 11 H 1.48502 * 109.47143 * 210.00183 * 9 7 5 12 12 H 1.48501 * 109.47141 * 330.00057 * 9 7 5 13 13 C 1.52997 * 109.46931 * 240.00282 * 2 1 3 14 14 H 1.08997 * 109.70375 * 52.36025 * 13 2 1 15 15 C 1.52769 * 109.50944 * 292.23864 * 13 2 1 16 16 C 1.53036 * 109.38122 * 185.70859 * 15 13 2 17 17 C 1.53042 * 109.54183 * 61.24311 * 16 15 13 18 18 C 1.53194 * 109.30850 * 298.63161 * 17 16 15 19 19 N 1.46925 * 108.77709 * 54.63813 * 18 17 16 20 20 C 1.34770 * 120.63638 * 126.36825 * 19 18 17 21 21 O 1.21525 * 120.00461 * 188.62494 * 20 19 18 22 22 C 1.48108 * 119.99797 * 8.61887 * 20 19 18 23 23 C 1.39348 * 119.70916 * 191.13432 * 22 20 19 24 24 C 1.38526 * 119.08114 * 180.27844 * 23 22 20 25 25 C 1.38767 * 118.47356 * 0.02562 * 24 23 22 26 26 Cl 1.73597 * 120.33668 * 180.02562 * 25 24 23 27 27 C 1.38720 * 119.32960 * 359.97438 * 25 24 23 28 28 N 1.31493 * 120.87635 * 0.02562 * 27 25 24 29 29 H 1.09002 * 109.46994 * 173.39603 * 1 2 3 30 30 H 1.09006 * 109.47074 * 293.39096 * 1 2 3 31 31 H 1.08994 * 109.47383 * 53.39331 * 1 2 3 32 32 H 0.97001 * 120.00156 * 94.99998 * 4 2 1 33 33 H 0.96997 * 119.99654 * 179.97438 * 8 7 5 34 34 H 1.08995 * 109.56090 * 65.67373 * 15 13 2 35 35 H 1.09003 * 109.35629 * 305.62061 * 15 13 2 36 36 H 1.08995 * 109.46089 * 301.22046 * 16 15 13 37 37 H 1.09008 * 109.44903 * 181.25335 * 16 15 13 38 38 H 1.08995 * 109.49801 * 178.68529 * 17 16 15 39 39 H 1.09001 * 109.52190 * 58.59641 * 17 16 15 40 40 H 1.08995 * 109.59119 * 294.84842 * 18 17 16 41 41 H 1.09003 * 109.58611 * 174.42010 * 18 17 16 42 42 H 1.08001 * 120.46167 * 0.25510 * 23 22 20 43 43 H 1.07997 * 120.76237 * 179.97438 * 24 23 22 44 44 H 1.07995 * 119.56635 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3758 6 1 1.8920 1.0403 2.4243 7 6 2.6124 -0.6618 3.5090 8 7 2.9263 -1.9386 3.4496 9 14 2.7902 0.2699 5.1183 10 1 1.5226 0.1777 5.8862 11 1 3.8953 -0.3226 5.9138 12 1 3.0941 1.6954 4.8340 13 6 2.0399 -0.7212 -1.2493 14 1 1.5716 -0.2951 -2.1365 15 6 1.6962 -2.2068 -1.1568 16 6 2.3297 -2.9490 -2.3357 17 6 3.8516 -2.7991 -2.2767 18 6 4.2191 -1.3159 -2.3855 19 7 3.4988 -0.5725 -1.3428 20 6 4.1639 0.2263 -0.4851 21 8 3.5849 0.7116 0.4668 22 6 5.6007 0.5125 -0.7024 23 6 6.3390 1.1401 0.2990 24 6 7.6806 1.4069 0.0797 25 6 8.2386 1.0369 -1.1358 26 17 9.9152 1.3474 -1.4616 27 6 7.4433 0.4153 -2.0874 28 7 6.1723 0.1745 -1.8517 29 1 -0.3633 -1.0209 -0.1182 30 1 -0.3633 0.4080 0.9433 31 1 -0.3634 0.6128 -0.8249 32 1 2.2490 -1.6318 1.1526 33 1 3.2503 -2.3957 4.2414 34 1 0.6140 -2.3335 -1.1863 35 1 2.0849 -2.6101 -0.2217 36 1 1.9594 -2.5287 -3.2707 37 1 2.0666 -4.0056 -2.2831 38 1 4.3034 -3.3474 -3.1033 39 1 4.2204 -3.1970 -1.3313 40 1 3.9321 -0.9393 -3.3672 41 1 5.2932 -1.1943 -2.2449 42 1 5.8718 1.4150 1.2331 43 1 8.2782 1.8924 0.8369 44 1 7.8737 0.1254 -3.0345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316878278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:55 Heat of formation + Delta-G solvation = 63.644799 kcal Electronic energy + Delta-G solvation = -28525.020273 eV Core-core repulsion = 24698.890976 eV Total energy + Delta-G solvation = -3826.129297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -40.85330 -39.47755 -36.99324 -36.73075 -35.13257 -33.06627 -32.15317 -32.04564 -31.01503 -29.52822 -27.99505 -25.61160 -23.96231 -23.77845 -23.75463 -22.87817 -20.81981 -20.12062 -18.91379 -17.19831 -16.95688 -16.88594 -16.35711 -15.33119 -15.19693 -14.86965 -14.54983 -14.22191 -14.00619 -13.91941 -13.65166 -13.53386 -13.37819 -12.81432 -12.66768 -12.42015 -12.21846 -12.08881 -11.99426 -11.84394 -11.54046 -11.29118 -11.00970 -10.82186 -10.68597 -10.57071 -10.48865 -10.35858 -10.06070 -10.00482 -9.79599 -9.34323 -9.20084 -9.02505 -8.64728 -8.37429 -7.85293 -6.56041 -5.48854 -2.70455 0.50735 0.99537 1.75986 3.02432 3.37095 3.56119 3.61786 3.63214 3.94912 4.14970 4.49781 4.66167 4.78368 4.82406 5.01901 5.16954 5.21605 5.26449 5.49478 5.55951 5.67341 5.71812 5.75222 5.78730 5.85796 5.87276 5.95007 6.10494 6.17844 6.22637 6.27067 6.34503 6.39402 6.50553 6.51596 6.60460 6.66699 6.98186 7.06631 7.09276 7.43626 7.51692 7.99702 8.01796 8.69232 8.88033 9.81185 10.38959 10.75422 11.75687 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.009756 B = 0.004895 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.317313 B = 5718.951885 C = 7771.056906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.170 3.830 3 H 0.078 0.922 4 N -0.702 5.702 5 C -0.174 4.174 6 H 0.065 0.935 7 C -0.031 4.031 8 N -0.948 5.948 9 Si 0.896 3.104 10 H -0.296 1.296 11 H -0.297 1.297 12 H -0.286 1.286 13 C 0.145 3.855 14 H 0.063 0.937 15 C -0.133 4.133 16 C -0.117 4.117 17 C -0.137 4.137 18 C 0.087 3.913 19 N -0.591 5.591 20 C 0.539 3.461 21 O -0.433 6.433 22 C 0.101 3.899 23 C -0.097 4.097 24 C -0.071 4.071 25 C -0.080 4.080 26 Cl -0.059 7.059 27 C 0.101 3.899 28 N -0.438 5.438 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.032 0.968 32 H 0.379 0.621 33 H 0.247 0.753 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.132 0.868 42 H 0.162 0.838 43 H 0.149 0.851 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.849 3.008 -15.928 18.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.060 3.940 3 H 0.095 0.905 4 N -0.344 5.344 5 C -0.306 4.306 6 H 0.083 0.917 7 C -0.224 4.224 8 N -0.600 5.600 9 Si 0.729 3.271 10 H -0.225 1.225 11 H -0.224 1.224 12 H -0.212 1.212 13 C 0.042 3.958 14 H 0.081 0.919 15 C -0.172 4.172 16 C -0.155 4.155 17 C -0.176 4.176 18 C -0.036 4.036 19 N -0.325 5.325 20 C 0.323 3.677 21 O -0.301 6.301 22 C -0.036 4.036 23 C -0.118 4.118 24 C -0.097 4.097 25 C -0.109 4.109 26 Cl -0.030 7.030 27 C -0.058 4.058 28 N -0.151 5.151 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.214 0.786 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.148 0.852 42 H 0.179 0.821 43 H 0.167 0.833 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 8.154 3.072 -15.876 18.110 hybrid contribution 0.988 0.337 1.486 1.816 sum 9.142 3.410 -14.390 17.386 Atomic orbital electron populations 1.22595 1.00041 1.00151 1.00361 1.20679 0.90337 0.97478 0.85535 0.90472 1.42443 1.77149 1.09708 1.05059 1.19083 1.32012 0.93186 0.86353 0.91738 1.24550 1.04301 0.96009 0.97513 1.69641 1.53672 1.08614 1.28071 0.86309 0.76977 0.78775 0.85019 1.22467 1.22428 1.21212 1.21527 0.79022 0.95981 0.99273 0.91904 1.21920 1.00579 0.95304 0.99382 1.21513 0.95498 1.00026 0.98421 1.21972 0.96404 0.97155 1.02046 1.22594 1.00947 0.89873 0.90154 1.47604 1.06991 1.45314 1.32626 1.17851 0.84376 0.82350 0.83130 1.91177 1.64659 1.49181 1.25114 1.21934 0.96316 0.95516 0.89882 1.22265 0.92851 0.95621 1.01031 1.21582 0.95109 0.97423 0.95590 1.22270 0.87178 1.04031 0.97451 1.98380 1.14877 1.94353 1.95390 1.22930 0.89296 0.94994 0.98602 1.67945 1.10405 1.15900 1.20849 0.93769 0.92443 0.94878 0.78567 0.94305 0.91128 0.90108 0.92540 0.92392 0.91713 0.91643 0.92683 0.85174 0.82052 0.83281 0.81544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 9.41 37.16 0.35 -2.81 16 2 C 0.17 3.47 1.88 -67.93 -0.13 3.34 16 3 H 0.08 1.73 5.91 -52.10 -0.31 1.42 16 4 N -0.70 -17.47 3.65 -53.42 -0.20 -17.67 16 5 C -0.17 -4.89 7.96 -15.06 -0.12 -5.01 16 6 H 0.06 1.83 7.83 -52.48 -0.41 1.42 16 7 C -0.03 -0.90 5.50 -17.43 -0.10 -1.00 16 8 N -0.95 -29.27 13.06 55.49 0.72 -28.54 16 9 Si 0.90 23.34 29.55 -169.99 -5.02 18.32 16 10 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 11 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 C 0.15 2.47 2.70 -67.81 -0.18 2.29 16 14 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.13 -2.15 4.88 -26.83 -0.13 -2.29 16 16 C -0.12 -1.54 5.88 -26.69 -0.16 -1.69 16 17 C -0.14 -1.81 6.08 -26.61 -0.16 -1.98 16 18 C 0.09 1.21 5.83 -3.71 -0.02 1.19 16 19 N -0.59 -9.98 2.98 -166.47 -0.50 -10.48 16 20 C 0.54 10.24 7.38 -12.21 -0.09 10.15 16 21 O -0.43 -9.79 9.09 5.34 0.05 -9.74 16 22 C 0.10 1.62 6.53 -83.01 -0.54 1.08 16 23 C -0.10 -1.43 9.63 -39.06 -0.38 -1.81 16 24 C -0.07 -0.83 9.97 -39.28 -0.39 -1.22 16 25 C -0.08 -0.87 6.35 -39.21 -0.25 -1.12 16 26 Cl -0.06 -0.55 28.99 -51.86 -1.50 -2.05 16 27 C 0.10 1.10 10.98 -17.52 -0.19 0.91 16 28 N -0.44 -5.88 6.22 -9.77 -0.06 -5.94 16 29 H 0.04 0.78 6.52 -51.93 -0.34 0.45 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.38 10.11 5.53 -40.82 -0.23 9.89 16 33 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.07 1.08 6.79 -51.93 -0.35 0.73 16 35 H 0.08 1.60 5.96 -51.93 -0.31 1.29 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.13 1.80 4.16 -76.89 -0.32 1.48 16 42 H 0.16 2.58 7.68 -52.49 -0.40 2.18 16 43 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -31.79 355.78 -9.66 -41.45 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -6.03 Total: 9.26 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -2.49 Total: 0.02 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.03 Total: -62.62 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.05 Total: -9.74 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.79 -9.66 -41.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316878278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.096 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds