Wall clock time and date at job start Tue Mar 31 2020 21:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47290 * 2 1 4 4 N 1.46499 * 109.47068 * 120.00148 * 2 1 3 5 5 C 1.36941 * 120.00033 * 274.99598 * 4 2 1 6 6 H 1.08003 * 119.99493 * 0.02562 * 5 4 2 7 7 C 1.38814 * 120.00125 * 180.02562 * 5 4 2 8 8 N 1.31619 * 119.99746 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00001 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46841 * 89.99969 * 9 7 5 11 11 H 1.48502 * 109.47143 * 210.00183 * 9 7 5 12 12 H 1.48501 * 109.47141 * 330.00057 * 9 7 5 13 13 C 1.52997 * 109.46931 * 240.00282 * 2 1 3 14 14 H 1.08997 * 109.70375 * 52.36025 * 13 2 1 15 15 C 1.52769 * 109.50944 * 292.23864 * 13 2 1 16 16 C 1.53036 * 109.38122 * 185.70859 * 15 13 2 17 17 C 1.53042 * 109.54183 * 61.24311 * 16 15 13 18 18 C 1.53194 * 109.30850 * 298.63161 * 17 16 15 19 19 N 1.46925 * 108.77709 * 54.63813 * 18 17 16 20 20 C 1.34770 * 120.63638 * 126.36825 * 19 18 17 21 21 O 1.21525 * 120.00461 * 188.62494 * 20 19 18 22 22 C 1.48108 * 119.99797 * 8.61887 * 20 19 18 23 23 C 1.39348 * 119.70916 * 191.13432 * 22 20 19 24 24 C 1.38526 * 119.08114 * 180.27844 * 23 22 20 25 25 C 1.38767 * 118.47356 * 0.02562 * 24 23 22 26 26 Cl 1.73597 * 120.33668 * 180.02562 * 25 24 23 27 27 C 1.38720 * 119.32960 * 359.97438 * 25 24 23 28 28 N 1.31493 * 120.87635 * 0.02562 * 27 25 24 29 29 H 1.09002 * 109.46994 * 173.39603 * 1 2 3 30 30 H 1.09006 * 109.47074 * 293.39096 * 1 2 3 31 31 H 1.08994 * 109.47383 * 53.39331 * 1 2 3 32 32 H 0.97001 * 120.00156 * 94.99998 * 4 2 1 33 33 H 0.96997 * 119.99654 * 179.97438 * 8 7 5 34 34 H 1.08995 * 109.56090 * 65.67373 * 15 13 2 35 35 H 1.09003 * 109.35629 * 305.62061 * 15 13 2 36 36 H 1.08995 * 109.46089 * 301.22046 * 16 15 13 37 37 H 1.09008 * 109.44903 * 181.25335 * 16 15 13 38 38 H 1.08995 * 109.49801 * 178.68529 * 17 16 15 39 39 H 1.09001 * 109.52190 * 58.59641 * 17 16 15 40 40 H 1.08995 * 109.59119 * 294.84842 * 18 17 16 41 41 H 1.09003 * 109.58611 * 174.42010 * 18 17 16 42 42 H 1.08001 * 120.46167 * 0.25510 * 23 22 20 43 43 H 1.07997 * 120.76237 * 179.97438 * 24 23 22 44 44 H 1.07995 * 119.56635 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3758 6 1 1.8920 1.0403 2.4243 7 6 2.6124 -0.6618 3.5090 8 7 2.9263 -1.9386 3.4496 9 14 2.7902 0.2699 5.1183 10 1 1.5226 0.1777 5.8862 11 1 3.8953 -0.3226 5.9138 12 1 3.0941 1.6954 4.8340 13 6 2.0399 -0.7212 -1.2493 14 1 1.5716 -0.2951 -2.1365 15 6 1.6962 -2.2068 -1.1568 16 6 2.3297 -2.9490 -2.3357 17 6 3.8516 -2.7991 -2.2767 18 6 4.2191 -1.3159 -2.3855 19 7 3.4988 -0.5725 -1.3428 20 6 4.1639 0.2263 -0.4851 21 8 3.5849 0.7116 0.4668 22 6 5.6007 0.5125 -0.7024 23 6 6.3390 1.1401 0.2990 24 6 7.6806 1.4069 0.0797 25 6 8.2386 1.0369 -1.1358 26 17 9.9152 1.3474 -1.4616 27 6 7.4433 0.4153 -2.0874 28 7 6.1723 0.1745 -1.8517 29 1 -0.3633 -1.0209 -0.1182 30 1 -0.3633 0.4080 0.9433 31 1 -0.3634 0.6128 -0.8249 32 1 2.2490 -1.6318 1.1526 33 1 3.2503 -2.3957 4.2414 34 1 0.6140 -2.3335 -1.1863 35 1 2.0849 -2.6101 -0.2217 36 1 1.9594 -2.5287 -3.2707 37 1 2.0666 -4.0056 -2.2831 38 1 4.3034 -3.3474 -3.1033 39 1 4.2204 -3.1970 -1.3313 40 1 3.9321 -0.9393 -3.3672 41 1 5.2932 -1.1943 -2.2449 42 1 5.8718 1.4150 1.2331 43 1 8.2782 1.8924 0.8369 44 1 7.8737 0.1254 -3.0345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316878278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:53 Heat of formation + Delta-G solvation = 44.721282 kcal Electronic energy + Delta-G solvation = -28525.840859 eV Core-core repulsion = 24698.890976 eV Total energy + Delta-G solvation = -3826.949882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.04496 -40.70106 -38.23422 -37.72251 -36.77671 -34.31208 -33.92484 -33.25219 -32.11092 -31.17658 -29.66605 -26.86772 -25.75426 -24.95307 -24.90625 -24.30004 -22.05951 -21.54410 -20.24120 -19.06547 -18.19029 -18.08726 -17.44047 -16.78635 -16.49669 -16.23964 -15.97009 -15.67246 -15.60086 -15.15954 -14.96304 -14.89290 -14.58625 -14.24192 -13.96352 -13.80214 -13.52747 -13.46271 -13.25085 -13.02538 -12.97782 -12.78251 -12.60219 -12.44886 -12.26771 -12.10119 -11.93460 -11.69684 -11.58649 -11.40074 -11.26589 -11.01545 -10.79732 -10.35772 -10.02059 -9.77791 -9.28170 -8.59523 -7.73814 -4.92281 -0.56257 0.01391 0.87203 1.44743 1.45869 1.54129 1.83508 2.11304 2.68287 2.74606 3.06599 3.57668 3.59559 3.63041 3.76986 3.90080 3.97574 4.04236 4.10348 4.16796 4.36160 4.41261 4.49309 4.61567 4.67721 4.71058 4.80458 4.84196 4.90335 4.97628 5.05792 5.10878 5.13517 5.17558 5.25566 5.33080 5.43384 5.49031 5.60337 5.63826 5.69809 6.02304 6.45639 6.48952 6.70159 7.46797 7.57217 8.34229 8.58741 9.51538 Molecular weight = 337.13amu Principal moments of inertia in cm(-1) A = 0.009756 B = 0.004895 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.317313 B = 5718.951885 C = 7771.056906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.165 3.835 3 H 0.057 0.943 4 N -0.704 5.704 5 C -0.153 4.153 6 H 0.055 0.945 7 C -0.095 4.095 8 N -0.983 5.983 9 Si 0.952 3.048 10 H -0.295 1.295 11 H -0.302 1.302 12 H -0.280 1.280 13 C 0.147 3.853 14 H 0.093 0.907 15 C -0.128 4.128 16 C -0.110 4.110 17 C -0.134 4.134 18 C 0.085 3.915 19 N -0.591 5.591 20 C 0.529 3.471 21 O -0.489 6.489 22 C 0.077 3.923 23 C -0.115 4.115 24 C -0.064 4.064 25 C -0.072 4.072 26 Cl -0.034 7.034 27 C 0.109 3.891 28 N -0.437 5.437 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.067 0.933 32 H 0.368 0.632 33 H 0.239 0.761 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.032 0.968 40 H 0.080 0.920 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.172 0.828 44 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.103 3.208 -19.199 21.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.057 3.943 3 H 0.074 0.926 4 N -0.344 5.344 5 C -0.286 4.286 6 H 0.073 0.927 7 C -0.284 4.284 8 N -0.638 5.638 9 Si 0.785 3.215 10 H -0.224 1.224 11 H -0.230 1.230 12 H -0.205 1.205 13 C 0.044 3.956 14 H 0.111 0.889 15 C -0.166 4.166 16 C -0.148 4.148 17 C -0.172 4.172 18 C -0.037 4.037 19 N -0.324 5.324 20 C 0.315 3.685 21 O -0.362 6.362 22 C -0.059 4.059 23 C -0.136 4.136 24 C -0.090 4.090 25 C -0.101 4.101 26 Cl -0.006 7.006 27 C -0.051 4.051 28 N -0.150 5.150 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.202 0.798 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.051 0.949 40 H 0.098 0.902 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.189 0.811 44 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 9.386 3.291 -19.211 21.634 hybrid contribution 0.728 0.352 2.323 2.459 sum 10.115 3.643 -16.889 20.020 Atomic orbital electron populations 1.22435 0.98246 1.01091 1.00393 1.20778 0.91361 0.96524 0.85631 0.92573 1.42527 1.77048 1.09142 1.05693 1.19230 1.29309 0.92618 0.87486 0.92714 1.25145 1.05981 0.96889 1.00389 1.69797 1.55972 1.09913 1.28160 0.85380 0.76507 0.77886 0.81695 1.22352 1.22964 1.20545 1.21500 0.79550 0.96273 0.98292 0.88897 1.21840 1.01195 0.94779 0.98798 1.21494 0.95075 1.00335 0.97864 1.21961 0.96702 0.96874 1.01664 1.22818 1.00910 0.89893 0.90082 1.47792 1.07093 1.44810 1.32732 1.18370 0.85699 0.81804 0.82668 1.91123 1.66223 1.51474 1.27344 1.21506 0.95136 0.97747 0.91499 1.22118 0.94353 0.96929 1.00199 1.21756 0.93818 0.96764 0.96663 1.22346 0.88287 1.02677 0.96768 1.98399 1.12891 1.94085 1.95183 1.23546 0.88239 0.93526 0.99757 1.67881 1.11654 1.15969 1.19479 0.93084 0.95020 0.91410 0.79795 0.95232 0.90229 0.94567 0.89798 0.91403 0.88379 0.94883 0.90210 0.85028 0.84616 0.81103 0.77764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.93 9.41 71.98 0.68 -5.25 16 2 C 0.17 6.92 1.88 44.99 0.08 7.01 16 3 H 0.06 2.63 5.91 -5.16 -0.03 2.60 16 4 N -0.70 -36.76 3.65 -322.94 -1.18 -37.94 16 5 C -0.15 -9.01 7.96 84.03 0.67 -8.35 16 6 H 0.05 3.27 7.83 -2.91 -0.02 3.25 16 7 C -0.09 -5.80 5.50 84.86 0.47 -5.34 16 8 N -0.98 -63.56 13.06 21.65 0.28 -63.28 16 9 Si 0.95 50.09 29.55 68.60 2.03 52.12 16 10 H -0.30 -15.30 7.11 99.48 0.71 -14.60 16 11 H -0.30 -16.00 7.11 99.48 0.71 -15.30 16 12 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 13 C 0.15 4.90 2.70 44.83 0.12 5.02 16 14 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 15 C -0.13 -4.03 4.88 30.53 0.15 -3.89 16 16 C -0.11 -2.61 5.88 30.62 0.18 -2.43 16 17 C -0.13 -3.25 6.08 30.67 0.19 -3.06 16 18 C 0.08 2.16 5.83 86.36 0.50 2.67 16 19 N -0.59 -19.86 2.98 -798.89 -2.38 -22.23 16 20 C 0.53 20.90 7.38 86.87 0.64 21.54 16 21 O -0.49 -23.53 9.09 -3.80 -0.03 -23.56 16 22 C 0.08 2.52 6.53 41.90 0.27 2.80 16 23 C -0.11 -3.53 9.63 22.61 0.22 -3.31 16 24 C -0.06 -1.44 9.97 22.47 0.22 -1.21 16 25 C -0.07 -1.37 6.35 22.51 0.14 -1.23 16 26 Cl -0.03 -0.53 28.99 -2.72 -0.08 -0.61 16 27 C 0.11 2.06 10.98 84.86 0.93 2.99 16 28 N -0.44 -11.05 6.22 -184.83 -1.15 -12.20 16 29 H 0.05 1.78 6.52 -2.39 -0.02 1.77 16 30 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.37 20.77 5.53 -92.71 -0.51 20.25 16 33 H 0.24 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.08 2.33 6.79 -2.39 -0.02 2.31 16 35 H 0.04 1.48 5.96 -2.39 -0.01 1.47 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.13 3.40 4.16 -51.68 -0.22 3.18 16 42 H 0.14 4.80 7.68 -2.91 -0.02 4.78 16 43 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 44 H 0.21 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -73.91 355.78 3.26 -70.66 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.30 Total: 29.10 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 5.47 Total: 7.95 kcal Atomic # 7 Polarization: -131.23 SS G_CDS: -4.43 Total: -135.65 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.03 Total: -23.56 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 2.03 Total: 52.12 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Total: -73.91 3.26 -70.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316878278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.376 kcal (2) G-P(sol) polarization free energy of solvation -73.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds