Wall clock time and date at job start Tue Mar 31 2020 21:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47317 * 2 1 4 4 C 1.50696 * 109.47419 * 240.00307 * 2 1 3 5 5 O 1.21284 * 119.99968 * 240.00187 * 4 2 1 6 6 N 1.34777 * 120.00043 * 59.99375 * 4 2 1 7 7 C 1.46506 * 119.99914 * 180.02562 * 6 4 2 8 8 H 1.08999 * 110.28725 * 324.32906 * 7 6 4 9 9 C 1.54259 * 110.32188 * 86.45915 * 7 6 4 10 10 C 1.54380 * 105.06050 * 118.89481 * 9 7 6 11 11 N 1.48559 * 104.59665 * 23.85174 * 10 9 7 12 12 C 1.46897 * 110.99812 * 200.96279 * 11 10 9 13 13 C 1.50699 * 109.46871 * 290.12192 * 12 11 10 14 14 O 1.21289 * 120.00348 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00079 * 180.02562 * 13 12 11 16 16 C 1.37091 * 120.00397 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00085 * 0.02562 * 16 15 13 18 18 C 1.38955 * 120.00379 * 180.02562 * 16 15 13 19 19 N 1.31408 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99909 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47336 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47066 * 120.00002 * 20 18 16 23 23 H 1.48503 * 109.46689 * 239.99639 * 20 18 16 24 24 C 1.48563 * 104.21883 * 320.51822 * 11 10 9 25 25 C 1.53001 * 109.47440 * 119.99803 * 2 1 3 26 26 F 1.39906 * 109.47389 * 179.97438 * 25 2 1 27 27 F 1.39895 * 109.47238 * 300.00488 * 25 2 1 28 28 F 1.39906 * 109.46909 * 60.00725 * 25 2 1 29 29 H 1.09005 * 109.46702 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46991 * 299.99303 * 1 2 3 31 31 H 1.08995 * 109.47661 * 60.00017 * 1 2 3 32 32 H 0.96992 * 120.00025 * 0.02562 * 6 4 2 33 33 H 1.09002 * 110.32056 * 237.79119 * 9 7 6 34 34 H 1.09004 * 110.32475 * 359.89194 * 9 7 6 35 35 H 1.09007 * 110.40962 * 142.63268 * 10 9 7 36 36 H 1.09003 * 110.40883 * 265.07207 * 10 9 7 37 37 H 1.08990 * 109.47703 * 50.12582 * 12 11 10 38 38 H 1.09006 * 109.46660 * 170.13027 * 12 11 10 39 39 H 0.97006 * 119.99841 * 359.97438 * 15 13 12 40 40 H 0.97000 * 120.00271 * 180.02562 * 19 18 16 41 41 H 1.09005 * 110.41094 * 280.70033 * 24 11 10 42 42 H 1.09004 * 110.40946 * 158.26169 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.7296 -1.6964 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 2.1947 -0.9408 -3.6508 8 1 3.1989 -1.3287 -3.4799 9 6 1.2361 -2.0862 -4.0363 10 6 0.7287 -1.7262 -5.4492 11 7 1.7797 -0.8382 -6.0095 12 6 1.2484 -0.0232 -7.1101 13 6 0.9695 -0.9058 -8.2994 14 8 1.1910 -2.0966 -8.2361 15 7 0.4739 -0.3719 -9.4333 16 6 0.2196 -1.1748 -10.5150 17 1 0.4161 -2.2352 -10.4585 18 6 -0.2909 -0.6242 -11.6843 19 7 -0.5304 0.6660 -11.7530 20 14 -0.6379 -1.7185 -13.1579 21 1 -0.2856 -3.1223 -12.8260 22 1 -2.0795 -1.6383 -13.5054 23 1 0.1760 -1.2644 -14.3141 24 6 2.1857 0.0150 -4.8631 25 6 2.0400 -0.7212 1.2492 26 9 3.4391 -0.7217 1.2489 27 9 1.5737 -0.0618 2.3915 28 9 1.5738 -2.0403 1.2492 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.1493 0.5389 -2.5435 33 1 1.7702 -3.0362 -4.0565 34 1 0.4035 -2.1356 -3.3345 35 1 0.6268 -2.6253 -6.0571 36 1 -0.2227 -1.1977 -5.3882 37 1 0.3248 0.4598 -6.7916 38 1 1.9798 0.7367 -7.3853 39 1 0.2963 0.5804 -9.4838 40 1 -0.8871 1.0503 -12.5691 41 1 1.4624 0.8160 -4.7104 42 1 3.1810 0.4270 -5.0297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316984366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:04 Heat of formation + Delta-G solvation = -217.965450 kcal Electronic energy + Delta-G solvation = -29333.370956 eV Core-core repulsion = 24512.464217 eV Total energy + Delta-G solvation = -4820.906739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.40904 -47.93518 -47.80412 -40.54457 -39.00854 -37.59307 -34.90316 -34.38655 -33.80744 -31.40301 -30.84189 -28.59413 -26.94666 -26.63209 -24.42265 -23.83295 -21.60065 -21.19112 -20.45779 -19.20547 -19.11570 -18.77463 -18.04851 -17.85088 -17.18770 -16.49183 -16.06465 -15.73183 -15.43672 -14.93363 -14.70405 -14.59041 -14.56227 -14.31156 -14.21996 -14.06446 -13.97031 -13.91744 -13.71321 -13.56003 -13.31797 -13.08147 -12.76907 -12.58062 -12.32607 -12.04711 -11.90615 -11.82733 -11.53011 -11.29602 -11.28632 -11.04024 -10.72897 -10.36303 -10.31602 -10.24830 -9.54219 -9.43297 -8.58821 -8.10806 -7.98090 -6.44500 -3.85135 2.05826 2.12969 2.61516 3.14455 3.25364 3.28557 3.32618 3.59606 3.66551 3.86776 4.01595 4.17218 4.27698 4.30753 4.42279 4.44698 4.65707 4.85225 4.95937 4.99877 5.11662 5.21730 5.23549 5.35323 5.38728 5.53813 5.66217 5.70751 5.81971 5.85212 6.04779 6.19598 6.22880 6.38712 6.93664 7.00910 7.10606 7.53120 7.68129 8.03583 8.58795 9.15794 9.51358 10.03106 10.73360 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.038932 B = 0.001865 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.033389 B =15007.616233 C =15128.330488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.164 4.164 3 H 0.140 0.860 4 C 0.522 3.478 5 O -0.514 6.514 6 N -0.714 5.714 7 C 0.142 3.858 8 H 0.103 0.897 9 C -0.132 4.132 10 C 0.037 3.963 11 N -0.481 5.481 12 C 0.035 3.965 13 C 0.444 3.556 14 O -0.576 6.576 15 N -0.565 5.565 16 C -0.297 4.297 17 H 0.104 0.896 18 C 0.021 3.979 19 N -0.902 5.902 20 Si 0.929 3.071 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.026 3.974 25 C 0.473 3.527 26 F -0.173 7.173 27 F -0.182 7.182 28 F -0.171 7.171 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.401 0.599 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.038 0.962 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.047 0.953 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 5.804 24.801 25.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 H 0.158 0.842 4 C 0.305 3.695 5 O -0.389 6.389 6 N -0.366 5.366 7 C 0.037 3.963 8 H 0.121 0.879 9 C -0.171 4.171 10 C -0.091 4.091 11 N -0.205 5.205 12 C -0.097 4.097 13 C 0.229 3.771 14 O -0.460 6.460 15 N -0.202 5.202 16 C -0.427 4.427 17 H 0.122 0.878 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.756 3.244 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.103 4.103 25 C 0.418 3.582 26 F -0.154 7.154 27 F -0.163 7.163 28 F -0.152 7.152 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.236 0.764 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.899 4.054 24.536 24.941 hybrid contribution -1.229 1.140 -0.418 1.727 sum 0.670 5.193 24.118 24.680 Atomic orbital electron populations 1.21863 0.89108 1.04978 1.04966 1.22655 1.01475 1.03087 0.91440 0.84230 1.19719 0.80742 0.84801 0.84223 1.90848 1.36620 1.25128 1.86289 1.46017 1.53455 1.32011 1.05125 1.21801 0.99481 0.92448 0.82556 0.87860 1.22755 0.98904 0.99015 0.96438 1.23200 0.92260 0.99351 0.94255 1.65151 1.34881 1.15862 1.04595 1.22067 0.99121 0.95852 0.92611 1.19656 0.84189 0.88883 0.84333 1.90516 1.56597 1.15727 1.83147 1.41861 1.56384 1.10816 1.11136 1.19745 1.39436 0.93591 0.89910 0.87846 1.25263 0.97304 0.96224 0.99221 1.69614 1.45106 1.10737 1.28938 0.85802 0.77886 0.80082 0.80600 1.19199 1.20784 1.20741 1.23378 1.01934 0.94739 0.90244 1.19742 0.76011 0.77950 0.84475 1.93229 1.29190 1.96349 1.96649 1.93186 1.88565 1.80850 1.53725 1.93220 1.88267 1.37073 1.96643 0.90359 0.89775 0.89653 0.76405 0.90054 0.91152 0.87914 0.94355 0.93178 0.89136 0.77536 0.91935 0.93467 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 8.85 37.15 0.33 -0.30 16 2 C -0.16 -1.01 2.71 -91.78 -0.25 -1.26 16 3 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 4 C 0.52 4.88 6.92 -10.99 -0.08 4.80 16 5 O -0.51 -7.12 14.53 5.55 0.08 -7.04 16 6 N -0.71 -5.50 4.93 -52.46 -0.26 -5.76 16 7 C 0.14 1.50 3.36 -66.55 -0.22 1.27 16 8 H 0.10 1.26 7.64 -51.93 -0.40 0.86 16 9 C -0.13 -1.60 6.78 -25.35 -0.17 -1.77 16 10 C 0.04 0.55 5.80 -2.18 -0.01 0.54 16 11 N -0.48 -7.44 5.06 -231.41 -1.17 -8.61 16 12 C 0.04 0.59 5.30 -4.98 -0.03 0.56 16 13 C 0.44 10.17 7.59 -10.99 -0.08 10.09 16 14 O -0.58 -15.24 14.42 5.55 0.08 -15.16 16 15 N -0.57 -13.97 5.29 -10.96 -0.06 -14.02 16 16 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 17 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 19 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 20 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 C 0.03 0.28 6.19 -2.18 -0.01 0.27 16 25 C 0.47 4.26 2.42 37.16 0.09 4.35 16 26 F -0.17 -1.91 16.40 2.25 0.04 -1.87 16 27 F -0.18 -1.47 16.80 2.25 0.04 -1.43 16 28 F -0.17 -1.89 15.88 2.25 0.04 -1.86 16 29 H 0.08 0.42 7.80 -51.93 -0.41 0.02 16 30 H 0.08 0.26 7.80 -51.93 -0.41 -0.15 16 31 H 0.08 0.20 7.56 -51.93 -0.39 -0.19 16 32 H 0.40 1.86 7.76 -40.82 -0.32 1.54 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.77 7.95 -51.93 -0.41 0.36 16 35 H 0.10 1.88 6.91 -51.93 -0.36 1.52 16 36 H 0.04 0.53 7.82 -51.93 -0.41 0.13 16 37 H 0.05 0.74 7.88 -51.93 -0.41 0.33 16 38 H 0.09 1.36 8.13 -51.93 -0.42 0.93 16 39 H 0.39 9.21 7.90 -40.82 -0.32 8.88 16 40 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.05 0.41 7.59 -51.93 -0.39 0.02 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -33.75 360.97 -6.18 -39.92 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.42 Total: 7.32 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -0.68 Total: 10.72 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -0.76 Total: -51.83 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.16 Total: -22.20 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.11 Total: -5.16 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.75 -6.18 -39.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316984366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.044 kcal (2) G-P(sol) polarization free energy of solvation -33.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds