Wall clock time and date at job start Tue Mar 31 2020 21:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47317 * 2 1 4 4 C 1.50696 * 109.47419 * 240.00307 * 2 1 3 5 5 O 1.21284 * 119.99968 * 240.00187 * 4 2 1 6 6 N 1.34777 * 120.00043 * 59.99375 * 4 2 1 7 7 C 1.46506 * 119.99914 * 180.02562 * 6 4 2 8 8 H 1.08999 * 110.28725 * 324.32906 * 7 6 4 9 9 C 1.54259 * 110.32188 * 86.45915 * 7 6 4 10 10 C 1.54380 * 105.06050 * 118.89481 * 9 7 6 11 11 N 1.48559 * 104.59665 * 23.85174 * 10 9 7 12 12 C 1.46897 * 110.99812 * 200.96279 * 11 10 9 13 13 C 1.50699 * 109.46871 * 290.12192 * 12 11 10 14 14 O 1.21289 * 120.00348 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00079 * 180.02562 * 13 12 11 16 16 C 1.37091 * 120.00397 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00085 * 0.02562 * 16 15 13 18 18 C 1.38955 * 120.00379 * 180.02562 * 16 15 13 19 19 N 1.31408 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99909 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47336 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47066 * 120.00002 * 20 18 16 23 23 H 1.48503 * 109.46689 * 239.99639 * 20 18 16 24 24 C 1.48563 * 104.21883 * 320.51822 * 11 10 9 25 25 C 1.53001 * 109.47440 * 119.99803 * 2 1 3 26 26 F 1.39906 * 109.47389 * 179.97438 * 25 2 1 27 27 F 1.39895 * 109.47238 * 300.00488 * 25 2 1 28 28 F 1.39906 * 109.46909 * 60.00725 * 25 2 1 29 29 H 1.09005 * 109.46702 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46991 * 299.99303 * 1 2 3 31 31 H 1.08995 * 109.47661 * 60.00017 * 1 2 3 32 32 H 0.96992 * 120.00025 * 0.02562 * 6 4 2 33 33 H 1.09002 * 110.32056 * 237.79119 * 9 7 6 34 34 H 1.09004 * 110.32475 * 359.89194 * 9 7 6 35 35 H 1.09007 * 110.40962 * 142.63268 * 10 9 7 36 36 H 1.09003 * 110.40883 * 265.07207 * 10 9 7 37 37 H 1.08990 * 109.47703 * 50.12582 * 12 11 10 38 38 H 1.09006 * 109.46660 * 170.13027 * 12 11 10 39 39 H 0.97006 * 119.99841 * 359.97438 * 15 13 12 40 40 H 0.97000 * 120.00271 * 180.02562 * 19 18 16 41 41 H 1.09005 * 110.41094 * 280.70033 * 24 11 10 42 42 H 1.09004 * 110.40946 * 158.26169 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.7296 -1.6964 -1.1192 6 7 1.7067 -0.2499 -2.4545 7 6 2.1947 -0.9408 -3.6508 8 1 3.1989 -1.3287 -3.4799 9 6 1.2361 -2.0862 -4.0363 10 6 0.7287 -1.7262 -5.4492 11 7 1.7797 -0.8382 -6.0095 12 6 1.2484 -0.0232 -7.1101 13 6 0.9695 -0.9058 -8.2994 14 8 1.1910 -2.0966 -8.2361 15 7 0.4739 -0.3719 -9.4333 16 6 0.2196 -1.1748 -10.5150 17 1 0.4161 -2.2352 -10.4585 18 6 -0.2909 -0.6242 -11.6843 19 7 -0.5304 0.6660 -11.7530 20 14 -0.6379 -1.7185 -13.1579 21 1 -0.2856 -3.1223 -12.8260 22 1 -2.0795 -1.6383 -13.5054 23 1 0.1760 -1.2644 -14.3141 24 6 2.1857 0.0150 -4.8631 25 6 2.0400 -0.7212 1.2492 26 9 3.4391 -0.7217 1.2489 27 9 1.5737 -0.0618 2.3915 28 9 1.5738 -2.0403 1.2492 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.1493 0.5389 -2.5435 33 1 1.7702 -3.0362 -4.0565 34 1 0.4035 -2.1356 -3.3345 35 1 0.6268 -2.6253 -6.0571 36 1 -0.2227 -1.1977 -5.3882 37 1 0.3248 0.4598 -6.7916 38 1 1.9798 0.7367 -7.3853 39 1 0.2963 0.5804 -9.4838 40 1 -0.8871 1.0503 -12.5691 41 1 1.4624 0.8160 -4.7104 42 1 3.1810 0.4270 -5.0297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316984366.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:03 Heat of formation + Delta-G solvation = -244.506320 kcal Electronic energy + Delta-G solvation = -29334.521854 eV Core-core repulsion = 24512.464217 eV Total energy + Delta-G solvation = -4822.057637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.11848 -48.62297 -48.57708 -41.37790 -40.37404 -39.04900 -36.03838 -35.59972 -34.94168 -33.28394 -32.04936 -29.58746 -28.11529 -27.41905 -26.05711 -24.62754 -22.68653 -22.01264 -21.41732 -20.84931 -19.85727 -19.80959 -19.48198 -18.70774 -17.92334 -17.78188 -17.23179 -16.77994 -16.43708 -16.34627 -16.08198 -15.70969 -15.57192 -15.33860 -15.21993 -14.98731 -14.79682 -14.77709 -14.70786 -14.57191 -14.32138 -14.04753 -13.67231 -13.50797 -13.43913 -13.20458 -13.02328 -12.95494 -12.77181 -12.45735 -12.41277 -12.36818 -12.32554 -12.11484 -11.78040 -11.47872 -11.09308 -10.34162 -10.20915 -9.98856 -9.37097 -8.45810 -5.93619 1.36669 1.36920 1.42195 1.48456 1.55907 1.94341 2.08164 2.29721 2.66062 2.83706 3.00203 3.12912 3.21390 3.37926 3.47969 3.66935 3.79055 3.83851 4.00935 4.06535 4.27310 4.30835 4.36876 4.47210 4.55858 4.63986 4.67700 4.69810 4.80616 4.94104 5.05660 5.13258 5.15828 5.33034 5.42641 5.83268 5.92373 6.09060 6.34319 6.62855 7.04731 7.15381 7.59082 8.15751 8.71788 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.038932 B = 0.001865 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.033389 B =15007.616233 C =15128.330488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.150 4.150 3 H 0.179 0.821 4 C 0.519 3.481 5 O -0.566 6.566 6 N -0.695 5.695 7 C 0.151 3.849 8 H 0.085 0.915 9 C -0.124 4.124 10 C 0.041 3.959 11 N -0.511 5.511 12 C 0.049 3.951 13 C 0.440 3.560 14 O -0.618 6.618 15 N -0.575 5.575 16 C -0.330 4.330 17 H 0.076 0.924 18 C -0.013 4.013 19 N -0.920 5.920 20 Si 0.990 3.010 21 H -0.276 1.276 22 H -0.270 1.270 23 H -0.272 1.272 24 C 0.034 3.966 25 C 0.463 3.537 26 F -0.189 7.189 27 F -0.176 7.176 28 F -0.188 7.188 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.421 0.579 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.082 0.918 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.036 8.441 25.591 26.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 H 0.196 0.804 4 C 0.305 3.695 5 O -0.444 6.444 6 N -0.348 5.348 7 C 0.045 3.955 8 H 0.103 0.897 9 C -0.163 4.163 10 C -0.087 4.087 11 N -0.236 5.236 12 C -0.082 4.082 13 C 0.227 3.773 14 O -0.504 6.504 15 N -0.213 5.213 16 C -0.459 4.459 17 H 0.094 0.906 18 C -0.213 4.213 19 N -0.561 5.561 20 Si 0.814 3.186 21 H -0.200 1.200 22 H -0.196 1.196 23 H -0.197 1.197 24 C -0.094 4.094 25 C 0.409 3.591 26 F -0.170 7.170 27 F -0.158 7.158 28 F -0.170 7.170 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.260 0.740 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.133 0.867 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.995 6.758 25.340 26.245 hybrid contribution -0.928 0.288 -0.587 1.135 sum 0.067 7.045 24.754 25.737 Atomic orbital electron populations 1.21960 0.87178 1.04624 1.07061 1.22709 1.02752 1.03815 0.87931 0.80409 1.20260 0.79782 0.84165 0.85303 1.90839 1.38974 1.27519 1.87034 1.45759 1.53114 1.32178 1.03780 1.21480 0.98137 0.92136 0.83698 0.89713 1.22645 0.99505 0.98865 0.95264 1.23032 0.93120 0.97839 0.94716 1.65037 1.35091 1.17277 1.06178 1.21924 1.01257 0.94722 0.90297 1.20846 0.81976 0.89149 0.85301 1.90498 1.57719 1.18132 1.84082 1.41922 1.57223 1.10798 1.11351 1.19646 1.41496 0.92979 0.91824 0.90601 1.25982 0.96567 0.97581 1.01125 1.69662 1.45014 1.11572 1.29830 0.84914 0.78260 0.77913 0.77518 1.20043 1.19557 1.19682 1.23399 1.03360 0.94661 0.87954 1.20261 0.75358 0.77626 0.85901 1.93195 1.30665 1.96388 1.96798 1.93193 1.88363 1.80519 1.53688 1.93184 1.88369 1.38631 1.96796 0.91968 0.88234 0.87028 0.73989 0.92116 0.89664 0.92487 0.93014 0.90310 0.86740 0.76919 0.91344 0.89972 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 8.85 71.98 0.64 -0.08 16 2 C -0.15 -1.42 2.71 -11.54 -0.03 -1.45 16 3 H 0.18 0.32 8.14 -2.39 -0.02 0.30 16 4 C 0.52 8.65 6.92 87.66 0.61 9.26 16 5 O -0.57 -15.52 14.53 -3.04 -0.04 -15.57 16 6 N -0.70 -8.49 4.93 -438.29 -2.16 -10.65 16 7 C 0.15 2.91 3.36 45.88 0.15 3.07 16 8 H 0.08 2.02 7.64 -2.39 -0.02 2.00 16 9 C -0.12 -2.93 6.78 31.49 0.21 -2.72 16 10 C 0.04 1.20 5.80 86.45 0.50 1.70 16 11 N -0.51 -15.06 5.06 -886.03 -4.49 -19.54 16 12 C 0.05 1.54 5.30 85.56 0.45 2.00 16 13 C 0.44 20.29 7.59 87.66 0.66 20.95 16 14 O -0.62 -33.92 14.42 -3.06 -0.04 -33.96 16 15 N -0.58 -28.72 5.29 -306.99 -1.62 -30.34 16 16 C -0.33 -18.51 9.68 84.04 0.81 -17.70 16 17 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 18 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 19 N -0.92 -48.67 13.05 21.66 0.28 -48.39 16 20 Si 0.99 42.66 29.55 68.60 2.03 44.68 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 C 0.03 0.62 6.19 86.45 0.54 1.16 16 25 C 0.46 7.77 2.42 71.98 0.17 7.94 16 26 F -0.19 -4.09 16.40 44.97 0.74 -3.35 16 27 F -0.18 -2.55 16.80 44.97 0.76 -1.79 16 28 F -0.19 -4.16 15.88 44.97 0.71 -3.45 16 29 H 0.06 0.54 7.80 -2.38 -0.02 0.52 16 30 H 0.10 0.23 7.80 -2.39 -0.02 0.21 16 31 H 0.11 -0.03 7.56 -2.39 -0.02 -0.05 16 32 H 0.42 1.81 7.76 -92.71 -0.72 1.09 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.08 1.75 7.95 -2.38 -0.02 1.73 16 35 H 0.06 2.20 6.91 -2.38 -0.02 2.18 16 36 H 0.05 1.36 7.82 -2.39 -0.02 1.34 16 37 H 0.08 2.04 7.88 -2.39 -0.02 2.02 16 38 H 0.11 3.06 8.13 -2.38 -0.02 3.04 16 39 H 0.40 18.57 7.90 -92.70 -0.73 17.84 16 40 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 41 H 0.08 0.98 7.59 -2.38 -0.02 0.96 16 42 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -77.72 360.97 0.98 -76.74 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -0.36 Total: 21.71 kcal Atomic # 6 Polarization: 18.72 SS G_CDS: 5.19 Total: 23.91 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -7.99 Total: -108.93 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.09 Total: -49.53 kcal Atomic # 9 Polarization: -10.79 SS G_CDS: 2.21 Total: -8.59 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Total: -77.72 0.98 -76.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316984366.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.770 kcal (2) G-P(sol) polarization free energy of solvation -77.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds