Wall clock time and date at job start Tue Mar 31 2020 21:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47292 * 2 1 4 4 C 1.50700 * 109.47222 * 119.99567 * 2 1 3 5 5 O 1.21277 * 120.00532 * 119.99937 * 4 2 1 6 6 N 1.34780 * 119.99957 * 300.00163 * 4 2 1 7 7 C 1.46498 * 120.00031 * 179.97438 * 6 4 2 8 8 H 1.08996 * 110.27689 * 327.09139 * 7 6 4 9 9 C 1.54597 * 110.39056 * 89.23651 * 7 6 4 10 10 C 1.54940 * 102.92214 * 140.91371 * 9 7 6 11 11 N 1.48527 * 103.22612 * 322.58629 * 10 9 7 12 12 C 1.46902 * 110.99964 * 159.71987 * 11 10 9 13 13 C 1.50702 * 109.47027 * 52.60122 * 12 11 10 14 14 O 1.21293 * 120.00255 * 0.02562 * 13 12 11 15 15 N 1.34783 * 120.00004 * 180.02562 * 13 12 11 16 16 C 1.37092 * 119.99804 * 180.02562 * 15 13 12 17 17 H 1.08002 * 120.00499 * 0.02562 * 16 15 13 18 18 C 1.38956 * 119.99671 * 179.72159 * 16 15 13 19 19 N 1.31414 * 120.00152 * 0.27554 * 18 16 15 20 20 Si 1.86803 * 119.99914 * 180.27723 * 18 16 15 21 21 H 1.48496 * 109.47187 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 119.99961 * 20 18 16 23 23 H 1.48498 * 109.47018 * 240.00007 * 20 18 16 24 24 C 1.47896 * 105.82134 * 39.20939 * 11 10 9 25 25 C 1.53001 * 109.47470 * 239.99254 * 2 1 3 26 26 F 1.39891 * 109.47242 * 300.00549 * 25 2 1 27 27 F 1.39907 * 109.46568 * 60.00400 * 25 2 1 28 28 F 1.39903 * 109.47287 * 179.97438 * 25 2 1 29 29 H 1.09004 * 109.46926 * 60.00592 * 1 2 3 30 30 H 1.09000 * 109.47160 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47121 * 300.00191 * 1 2 3 32 32 H 0.96998 * 120.00136 * 359.97438 * 6 4 2 33 33 H 1.09001 * 110.72499 * 259.27235 * 9 7 6 34 34 H 1.09008 * 110.72586 * 22.38014 * 9 7 6 35 35 H 1.09002 * 110.66618 * 204.14629 * 10 9 7 36 36 H 1.09002 * 110.66469 * 81.02379 * 10 9 7 37 37 H 1.09004 * 109.47131 * 292.60366 * 12 11 10 38 38 H 1.08994 * 109.47471 * 172.60116 * 12 11 10 39 39 H 0.97000 * 119.99715 * 359.97438 * 15 13 12 40 40 H 0.96991 * 119.99827 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.92297 * 94.01998 * 24 11 10 42 42 H 1.09002 * 109.91586 * 215.31906 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1194 6 7 1.7067 -0.2498 2.4546 7 6 2.1946 -0.9406 3.6508 8 1 2.2712 -2.0116 3.4636 9 6 3.5664 -0.3713 4.0797 10 6 3.4654 -0.3517 5.6257 11 7 2.0526 0.0364 5.8690 12 6 1.6269 -0.3466 7.2219 13 6 2.6073 0.1964 8.2295 14 8 3.5660 0.8395 7.8573 15 7 2.4189 -0.0327 9.5442 16 6 3.3104 0.4616 10.4608 17 1 4.1636 1.0350 10.1295 18 6 3.1130 0.2304 11.8167 19 7 2.0746 -0.4668 12.2200 20 14 4.3236 0.9105 13.0662 21 1 5.3983 1.6536 12.3605 22 1 3.6144 1.8275 13.9943 23 1 4.9209 -0.2094 13.8371 24 6 1.2573 -0.6720 4.8428 25 6 2.0400 -0.7214 -1.2491 26 9 1.5737 -2.0403 -1.2491 27 9 1.5737 -0.0619 -2.3915 28 9 3.4391 -0.7209 -1.2494 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.1493 0.5391 2.5436 33 1 4.3746 -1.0263 3.7543 34 1 3.7061 0.6358 3.6868 35 1 4.1458 0.3888 6.0463 36 1 3.6692 -1.3403 6.0371 37 1 1.5923 -1.4334 7.2979 38 1 0.6369 0.0634 7.4210 39 1 1.6520 -0.5467 9.8419 40 1 1.9370 -0.6285 13.1664 41 1 0.8883 -1.6156 5.2449 42 1 0.4217 -0.0486 4.5249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316984368.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:18 Heat of formation + Delta-G solvation = -216.083274 kcal Electronic energy + Delta-G solvation = -29361.545240 eV Core-core repulsion = 24540.720119 eV Total energy + Delta-G solvation = -4820.825121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.140 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.38241 -47.90421 -47.78251 -40.49088 -39.08396 -37.54602 -34.85924 -34.37564 -33.79897 -31.45022 -30.80979 -28.50364 -26.91200 -26.61120 -24.40285 -23.79880 -21.33934 -21.07354 -20.71031 -19.31668 -19.07791 -18.74063 -17.97446 -17.89574 -17.14105 -16.42963 -15.95149 -15.74785 -15.38036 -14.85732 -14.76294 -14.58493 -14.49832 -14.28816 -14.21051 -14.02342 -13.94365 -13.90159 -13.82257 -13.58625 -13.16390 -13.03779 -12.67591 -12.45446 -12.33947 -12.06334 -11.89120 -11.69644 -11.59248 -11.49012 -11.14178 -11.02371 -10.68882 -10.36773 -10.28280 -10.26570 -9.56179 -9.39234 -8.44569 -8.09069 -7.97433 -6.46969 -3.87889 2.10784 2.17130 2.67950 3.12832 3.24100 3.30952 3.31759 3.63255 3.74105 3.83095 4.00649 4.20366 4.26339 4.34011 4.43556 4.51651 4.76493 4.88625 4.97897 5.02476 5.11035 5.20779 5.37612 5.38369 5.41601 5.59619 5.66016 5.73852 5.86501 5.98859 6.13491 6.20344 6.29116 6.60821 7.01546 7.11154 7.19137 7.50801 7.73135 8.00605 8.55545 9.12664 9.47848 9.99030 10.70657 Molecular weight = 337.14amu Principal moments of inertia in cm(-1) A = 0.040692 B = 0.001876 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.938120 B =14920.785481 C =15175.543376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.164 4.164 3 H 0.141 0.859 4 C 0.521 3.479 5 O -0.520 6.520 6 N -0.708 5.708 7 C 0.135 3.865 8 H 0.097 0.903 9 C -0.135 4.135 10 C 0.038 3.962 11 N -0.494 5.494 12 C 0.035 3.965 13 C 0.441 3.559 14 O -0.581 6.581 15 N -0.561 5.561 16 C -0.299 4.299 17 H 0.104 0.896 18 C 0.022 3.978 19 N -0.900 5.900 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.027 3.973 25 C 0.473 3.527 26 F -0.172 7.172 27 F -0.182 7.182 28 F -0.173 7.173 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.404 0.596 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.039 0.961 37 H 0.051 0.949 38 H 0.091 0.909 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.056 0.944 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.018 -0.093 -23.806 24.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 H 0.159 0.841 4 C 0.305 3.695 5 O -0.395 6.395 6 N -0.360 5.360 7 C 0.030 3.970 8 H 0.115 0.885 9 C -0.175 4.175 10 C -0.089 4.089 11 N -0.218 5.218 12 C -0.096 4.096 13 C 0.227 3.773 14 O -0.466 6.466 15 N -0.197 5.197 16 C -0.429 4.429 17 H 0.122 0.878 18 C -0.180 4.180 19 N -0.542 5.542 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.102 4.102 25 C 0.418 3.582 26 F -0.153 7.153 27 F -0.164 7.164 28 F -0.154 7.154 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.240 0.760 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.140 0.860 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.226 0.774 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.987 0.102 -23.969 24.706 hybrid contribution -0.159 -0.601 0.880 1.077 sum -6.145 -0.500 -23.089 23.898 Atomic orbital electron populations 1.21858 0.89135 1.04843 1.05021 1.22657 1.01455 1.03180 0.91388 0.84146 1.19729 0.80736 0.84713 0.84311 1.90829 1.36785 1.25501 1.86358 1.45963 1.53351 1.31850 1.04852 1.21956 0.94257 0.97580 0.83189 0.88511 1.23007 0.95927 1.01789 0.96742 1.23496 0.91231 1.01073 0.93083 1.64649 1.03308 1.52955 1.00918 1.22117 0.99759 0.98533 0.89213 1.19678 0.88233 0.86111 0.83324 1.90441 1.32793 1.44410 1.78933 1.41860 1.25434 1.48072 1.04321 1.19752 1.05950 1.31067 0.86091 0.87790 1.25284 0.97525 0.97107 0.98045 1.69616 1.28204 1.39561 1.16780 0.85792 0.80020 0.78541 0.79954 1.19190 1.20714 1.20747 1.23190 0.96724 0.98073 0.92193 1.19750 0.76036 0.77883 0.84501 1.93208 1.88272 1.37172 1.96654 1.93188 1.88580 1.80848 1.53735 1.93231 1.29166 1.96337 1.96647 0.89813 0.90459 0.89557 0.75994 0.90742 0.90415 0.86014 0.94235 0.93151 0.89116 0.77436 0.91860 0.92621 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 8.85 37.15 0.33 -0.31 16 2 C -0.16 -1.09 2.71 -91.77 -0.25 -1.34 16 3 H 0.14 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.52 5.12 6.92 -10.98 -0.08 5.04 16 5 O -0.52 -7.34 14.49 5.56 0.08 -7.26 16 6 N -0.71 -5.95 4.95 -52.49 -0.26 -6.21 16 7 C 0.13 1.47 3.34 -66.57 -0.22 1.24 16 8 H 0.10 1.15 7.56 -51.93 -0.39 0.76 16 9 C -0.14 -1.73 6.78 -24.87 -0.17 -1.90 16 10 C 0.04 0.61 5.30 -1.90 -0.01 0.60 16 11 N -0.49 -7.54 5.26 -231.89 -1.22 -8.76 16 12 C 0.04 0.60 5.52 -4.97 -0.03 0.57 16 13 C 0.44 9.95 7.49 -10.98 -0.08 9.87 16 14 O -0.58 -14.82 13.10 5.55 0.07 -14.74 16 15 N -0.56 -13.77 5.29 -10.96 -0.06 -13.83 16 16 C -0.30 -8.13 9.68 -14.93 -0.14 -8.27 16 17 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 18 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 19 N -0.90 -24.05 13.05 55.50 0.72 -23.33 16 20 Si 0.93 20.68 29.55 -169.99 -5.02 15.65 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.03 0.30 6.47 -2.76 -0.02 0.28 16 25 C 0.47 4.42 2.42 37.16 0.09 4.51 16 26 F -0.17 -1.91 15.88 2.25 0.04 -1.87 16 27 F -0.18 -1.53 16.80 2.25 0.04 -1.49 16 28 F -0.17 -1.99 16.40 2.25 0.04 -1.96 16 29 H 0.08 0.27 7.80 -51.93 -0.41 -0.14 16 30 H 0.08 0.40 7.80 -51.93 -0.41 -0.01 16 31 H 0.09 0.20 7.56 -51.93 -0.39 -0.19 16 32 H 0.40 2.31 7.77 -40.82 -0.32 1.99 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.98 8.06 -51.92 -0.42 0.56 16 35 H 0.12 2.36 5.97 -51.93 -0.31 2.05 16 36 H 0.04 0.65 8.02 -51.93 -0.42 0.23 16 37 H 0.05 0.78 7.81 -51.93 -0.41 0.37 16 38 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 39 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 40 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.06 0.59 7.57 -51.93 -0.39 0.20 16 42 H 0.08 0.76 7.65 -51.93 -0.40 0.36 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -32.68 358.42 -6.20 -38.88 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.35 Total: 8.74 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -0.67 Total: 10.78 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.81 Total: -52.13 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: 0.15 Total: -22.00 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.11 Total: -5.32 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.68 -6.20 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316984368.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.205 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds